Lcy04g003380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g003380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein Ycf2-like
Location	Chr04: 24920075 .. 24920558 (+)
RNA-Seq Expression	Lcy04g003380
Synteny	Lcy04g003380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCATATAATCATGATTGACGATGAGAAACTATTTAATGGGTATCCATGGAGAAGGTTAGCATTCGACTTATTGGTTGAATTCATGCAAAAAGCCTTGAAGAGCAAGGGGGCCACGGGAATATATATGGGTGGCTTCATATTCCCCATATTAGCATGGGCTTATGAAGTGATGTCAATACTAAGTTGCCCACAAAATTTCTTTGCAAGAAAAATCGCGGATACAATTTCAAGGATTGTCAATTGGCTGGTAGACACACAACCAAAATGGAAGGACCTAGAAAAAAAAGTATTTGAGTCAAGAGAGGTAAAGAATTCAATAATTATGTTCATTAATTAGTAATTTACAGAAAATATTTTACTGACATTGTTTCTTTATTGCAAACTAACAGCTTGAAGTAATTCCAATGATAGCTATAGATGTGGAAATGGAAATGGATTATTTCCAACCATTTATGGAGGAAGAAAAGAAGTTTACATGA

mRNA sequence

ATGAACCATATAATCATGATTGACGATGAGAAACTATTTAATGGGTATCCATGGAGAAGGTTAGCATTCGACTTATTGGTTGAATTCATGCAAAAAGCCTTGAAGAGCAAGGGGGCCACGGGAATATATATGGGTGGCTTCATATTCCCCATATTAGCATGGGCTTATGAAGTGATGTCAATACTAAGTTGCCCACAAAATTTCTTTGCAAGAAAAATCGCGGATACAATTTCAAGGATTGTCAATTGGCTGGTAGACACACAACCAAAATGGAAGGACCTAGAAAAAAAAGTATTTGAGTCAAGAGAGCTTGAAGTAATTCCAATGATAGCTATAGATGTGGAAATGGAAATGGATTATTTCCAACCATTTATGGAGGAAGAAAAGAAGTTTACATGA

Coding sequence (CDS)

ATGAACCATATAATCATGATTGACGATGAGAAACTATTTAATGGGTATCCATGGAGAAGGTTAGCATTCGACTTATTGGTTGAATTCATGCAAAAAGCCTTGAAGAGCAAGGGGGCCACGGGAATATATATGGGTGGCTTCATATTCCCCATATTAGCATGGGCTTATGAAGTGATGTCAATACTAAGTTGCCCACAAAATTTCTTTGCAAGAAAAATCGCGGATACAATTTCAAGGATTGTCAATTGGCTGGTAGACACACAACCAAAATGGAAGGACCTAGAAAAAAAAGTATTTGAGTCAAGAGAGCTTGAAGTAATTCCAATGATAGCTATAGATGTGGAAATGGAAATGGATTATTTCCAACCATTTATGGAGGAAGAAAAGAAGTTTACATGA

Protein sequence

MNHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSILSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYFQPFMEEEKKFT

Homology

[Close]

BLAST of Lcy04g003380 vs. ExPASy TrEMBL
Match: A0A5D3CEX9 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G00200 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 80/129 (62.02%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYM-GGFIFPILAWAYEVMS 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI M GGFIFPILAWAYEV+ 
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGGFIFPILAWAYEVIP 166

Query: 62  ILSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDY 121
            LS P NFFA +I++ + RI+NW  DTQPKWKDL++KVF+S  LEV PM+A   E+ M +
Sbjct: 167 TLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMPF 226

Query: 122 FQPFMEEEK 130
           F PF E EK
Sbjct: 227 FAPFNETEK 235

[Close]

BLAST of Lcy04g003380 vs. ExPASy TrEMBL
Match: A0A5A7U047 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00640 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.2e-38
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM + + SKG TGI MGGFIFPILAWAYEV+  
Sbjct: 338 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISMGGFIFPILAWAYEVIPT 397

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFF  +I++ + RI+N   DTQPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 398 LSTPPNFFVTRISNEVPRIINCATDTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMPFF 457

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 458 APFIETEK 465

[Close]

BLAST of Lcy04g003380 vs. ExPASy TrEMBL
Match: A0A5D3DCN3 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00080 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.6e-38
Identity = 76/128 (59.38%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           ++IIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI + GFIFPILAWAYEV+  
Sbjct: 120 DYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVIPT 179

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I++ + RI+NW  D QPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 180 LSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPMLATPDEVGMPFF 239

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 240 APFIETEK 247

[Close]

BLAST of Lcy04g003380 vs. ExPASy TrEMBL
Match: A0A5A7UD30 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G001010 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 3.6e-38
Identity = 76/128 (59.38%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           ++IIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI + GFIFPILAWAYEV+  
Sbjct: 201 DYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVIPT 260

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I++ + RI+NW  D QPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 261 LSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPMLATPDEVGMPFF 320

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 321 APFIETEK 328

[Close]

BLAST of Lcy04g003380 vs. ExPASy TrEMBL
Match: A0A5A7U6E1 (Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001210 PE=4 SV=1)

HSP 1 Score: 164.1 bits (414), Expect = 4.0e-37
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM + + SKG TGI + GFIF ILAWAYEV   
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISIWGFIFLILAWAYEVNPT 166

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I + + RI+NW  DTQPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 167 LSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPMLATPNEVGMPFF 226

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 227 APFIETEK 234

[Close]

BLAST of Lcy04g003380 vs. NCBI nr
Match: TYK09852.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-39
Identity = 80/129 (62.02%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYM-GGFIFPILAWAYEVMS 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI M GGFIFPILAWAYEV+ 
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISMGGGFIFPILAWAYEVIP 166

Query: 62  ILSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDY 121
            LS P NFFA +I++ + RI+NW  DTQPKWKDL++KVF+S  LEV PM+A   E+ M +
Sbjct: 167 TLSTPPNFFATRISNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMPF 226

Query: 122 FQPFMEEEK 130
           F PF E EK
Sbjct: 227 FAPFNETEK 235

[Close]

BLAST of Lcy04g003380 vs. NCBI nr
Match: KAA0047596.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.6e-38
Identity = 77/128 (60.16%), Postives = 101/128 (78.91%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM + + SKG TGI MGGFIFPILAWAYEV+  
Sbjct: 338 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISMGGFIFPILAWAYEVIPT 397

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFF  +I++ + RI+N   DTQPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 398 LSTPPNFFVTRISNEVPRIINCATDTQPKWKDLKQKVFDSPTLEVSPMLATPDEVGMPFF 457

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 458 APFIETEK 465

[Close]

BLAST of Lcy04g003380 vs. NCBI nr
Match: TYK21258.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.5e-38
Identity = 76/128 (59.38%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           ++IIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI + GFIFPILAWAYEV+  
Sbjct: 120 DYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVIPT 179

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I++ + RI+NW  D QPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 180 LSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPMLATPDEVGMPFF 239

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 240 APFIETEK 247

[Close]

BLAST of Lcy04g003380 vs. NCBI nr
Match: KAA0051565.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 167.5 bits (423), Expect = 7.5e-38
Identity = 76/128 (59.38%), Postives = 102/128 (79.69%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           ++IIM+DD+++F+GYPW R+AF+LLV+FM +A+ SKG TGI + GFIFPILAWAYEV+  
Sbjct: 201 DYIIMVDDDEVFDGYPWGRVAFELLVDFMNRAVCSKGQTGISIVGFIFPILAWAYEVIPT 260

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I++ + RI+NW  D QPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 261 LSTPPNFFATRISNEVPRIINWAADIQPKWKDLKQKVFDSLTLEVSPMLATPDEVGMPFF 320

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 321 APFIETEK 328

[Close]

BLAST of Lcy04g003380 vs. NCBI nr
Match: TYK23840.1 (protein Ycf2-like [Cucumis melo var. makuwa])

HSP 1 Score: 164.1 bits (414), Expect = 8.3e-37
Identity = 76/128 (59.38%), Postives = 99/128 (77.34%), Query Frame = 0


Query: 2   NHIIMIDDEKLFNGYPWRRLAFDLLVEFMQKALKSKGATGIYMGGFIFPILAWAYEVMSI 61
           +HIIM+DD+++F+GYPW R+AF+LLV+FM + + SKG TGI + GFIF ILAWAYEV   
Sbjct: 107 DHIIMVDDDEVFDGYPWGRVAFELLVDFMNRVVCSKGQTGISIWGFIFLILAWAYEVNPT 166

Query: 62  LSCPQNFFARKIADTISRIVNWLVDTQPKWKDLEKKVFESRELEVIPMIAIDVEMEMDYF 121
           LS P NFFA +I + + RI+NW  DTQPKWKDL++KVF+S  LEV PM+A   E+ M +F
Sbjct: 167 LSTPFNFFATRIFNEVPRIINWAADTQPKWKDLKQKVFDSPTLEVSPMLATPNEVGMPFF 226

Query: 122 QPFMEEEK 130
            PF+E EK
Sbjct: 227 APFIETEK 234

The following BLAST results are available for this feature:

BLAST of Lcy04g003380 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g003380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CEX9	2.5e-39	62.02	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold39G002...	[more]
A0A5A7U047	1.2e-38	60.16	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold115G00...	[more]
A0A5D3DCN3	3.6e-38	59.38	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold101G00...	[more]
A0A5A7UD30	3.6e-38	59.38	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold174G00...	[more]
A0A5A7U6E1	4.0e-37	59.38	Protein Ycf2-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold55G001...	[more]

BLAST of Lcy04g003380 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK09852.1	5.2e-39	62.02	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0047596.1	2.6e-38	60.16	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK21258.1	7.5e-38	59.38	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
KAA0051565.1	7.5e-38	59.38	protein Ycf2-like [Cucumis melo var. makuwa]	[more]
TYK23840.1	8.3e-37	59.38	protein Ycf2-like [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g003380 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g003380.1	Lcy04g003380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane