Lcy04g003000 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g003000
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotrans_gag domain-containing protein
Location	Chr04: 23616080 .. 23616707 (-)
RNA-Seq Expression	Lcy04g003000
Synteny	Lcy04g003000

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTATTAATACTCTCAAATCTCCTTTCTATGACAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTAGAGAGAGAATCGAGTACGAAATTAAGCATGGAAAGATAACTGATACGCTCGAATCATCAACAGTGAAGAATGGGGTTCCATCAAAGAAAAAAGAGGGAGAAGTTCAGATGATTGGTTTCAATTCAAGACAACAACCATACCCCAATGCTGGAGTGCCACAATACCACTATCCACCTCCATATGCTTACCCTCAACCCTATATCAATAATACGTCAGCCCAATATTCCTCTCCTTACGTTCAAAATCCCCGTCCTACTCAAAGCTACCAGCCTCGGAATCAACAAAACTCTCCTTATGTCCAGGGACACCAAAACAATAAAGAGGTCAGTAGACAAACTCATTTTGATCCAATTCCAATGACGTATACTGAACTCTTACCCCAACTTTTCTAAAACAATCAGTTGGCACCTATGCCAATGGACCCAGTACAACCACCTTACCCAAAGTGGTATGACCCAAATGTCCGTTGCGATTACCATGCAGGAGCAATTGGACATTCCACCGAAAACTGCACTACACTCAAGCATAGGGTGCAAGCATTAG

mRNA sequence

ATGTTTATTAATACTCTCAAATCTCCTTTCTATGACAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTAGAGAGAGAATCGAGTACGAAATTAAGCATGGAAAGATAACTGATACGCTCGAATCATCAACAGTGAAGAATGGGGTTCCATCAAAGAAAAAAGAGGGAGAAGTTCAGATGATTGGTTTCAATTCAAGACAACAACCATACCCCAATGCTGGAGTGCCACAATACCACTATCCACCTCCATATGCTTACCCTCAACCCTATATCAATAATACGTCAGCCCAATATTCCTCTCCTTACGTTCAAAATCCCCGTCCTACTCAAAGCTACCAGCCTCGGAATCAACAAAACTCTCCTTATGTCCAGGGACACCAAAACAATAAAGAGGAGCAATTGGACATTCCACCGAAAACTGCACTACACTCAAGCATAGGGTGCAAGCATTAG

Coding sequence (CDS)

ATGTTTATTAATACTCTCAAATCTCCTTTCTATGACAAGATGATTGGGAGTGCCTCTACCAATTTCTCTGACATAATGACAATTAGAGAGAGAATCGAGTACGAAATTAAGCATGGAAAGATAACTGATACGCTCGAATCATCAACAGTGAAGAATGGGGTTCCATCAAAGAAAAAAGAGGGAGAAGTTCAGATGATTGGTTTCAATTCAAGACAACAACCATACCCCAATGCTGGAGTGCCACAATACCACTATCCACCTCCATATGCTTACCCTCAACCCTATATCAATAATACGTCAGCCCAATATTCCTCTCCTTACGTTCAAAATCCCCGTCCTACTCAAAGCTACCAGCCTCGGAATCAACAAAACTCTCCTTATGTCCAGGGACACCAAAACAATAAAGAGGAGCAATTGGACATTCCACCGAAAACTGCACTACACTCAAGCATAGGGTGCAAGCATTAG

Protein sequence

MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTLESSTVKNGVPSKKKEGEVQMIGFNSRQQPYPNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYVQNPRPTQSYQPRNQQNSPYVQGHQNNKEEQLDIPPKTALHSSIGCKH

Homology

[Close]

BLAST of Lcy04g003000 vs. ExPASy TrEMBL
Match: A0A6J1DM29 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia OX=3673 GN=LOC111022231 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 1.2e-29
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIGSAST+FSDI+TI ERIEY + HG+IT T+ ESST K    SKKK
Sbjct: 302 MFINTLKHPFYDRMIGSASTSFSDILTIGERIEYGVXHGRITSTVGESSTXKXXTSSKKK 361

Query: 61  EGEVQMIGFNS---RQQPY-PNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYVQNPRPTQ 120
           EGEVQM+G +    RQ PY        Y+YP PY Y QPY+N  + QY++     P  +Q
Sbjct: 362 EGEVQMVGADRHVWRQPPYGKTXXYAPYYYPSPYGYNQPYVNXATFQYTASQNFRPPASQ 421

Query: 121 SYQPRN-QQNSPYVQGHQNN----KEEQLDIPPKT 146
            +QPR  QQN+ Y QG QNN    K+ Q D  P T
Sbjct: 422 GFQPRGYQQNTVYTQGQQNNRSTRKQSQFDPIPMT 456

[Close]

BLAST of Lcy04g003000 vs. ExPASy TrEMBL
Match: A0A6J1D099 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 8.9e-28
Identity = 88/168 (52.38%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIGSASTNFSDIMTI ERIEY ++HG+IT T  E    K    SKKK
Sbjct: 229 MFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHGRITSTTDEPLAAKKASHSKKK 288

Query: 61  EGEVQMIGFNS---RQQPYPNAGVPQ---YHYPPPYAYPQPYINNTSAQYSSPYVQNPRP 120
           EGEVQM+G +    +QQPY     PQ   Y+YP PY Y QP++NN ++ Y     QN RP
Sbjct: 289 EGEVQMVGADRHSWKQQPYRR--TPQYSPYYYPTPYGYNQPFVNNATSHYYPYASQNFRP 348

Query: 121 -----------TQSYQPRNQQ-NSPYVQGHQNN----KEEQLDIPPKT 146
                      +Q++QPR QQ N+ Y QG QNN    K+ Q D  P T
Sbjct: 349 PASQNFQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMT 394

[Close]

BLAST of Lcy04g003000 vs. ExPASy TrEMBL
Match: A0A6J1E2J7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.8e-27
Identity = 84/166 (50.60%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIG+ASTNFSDIMTI ERIEY ++HG+IT T+ E    K    SKKK
Sbjct: 189 MFINTLKHPFYDRMIGNASTNFSDIMTIGERIEYGVRHGRITSTVDEPLAAKKASHSKKK 248

Query: 61  EGEVQMIGFNS---RQQPYPNA-GVPQYHYPPPYAYPQPYINNTSAQYSSPYVQNPRP-- 120
           EGEVQM+G +    +QQPY        Y+YP PY Y QP++NN ++ YS    QN RP  
Sbjct: 249 EGEVQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYTFQNFRPPA 308

Query: 121 ---------TQSYQPRNQQ-NSPYVQGHQNN----KEEQLDIPPKT 146
                    +Q++QPR QQ N+ Y Q  Q N    K+ Q D  P T
Sbjct: 309 SQNFQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMT 354

[Close]

BLAST of Lcy04g003000 vs. ExPASy TrEMBL
Match: A0A5A7T1W2 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00060 PE=4 SV=1)

HSP 1 Score: 95.1 bits (235), Expect = 2.7e-16
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITD-TLESSTVKNGVPSKKK 60
           MF+NTL++PFY++MIG+ASTNFSDI+ I ERIEY IKHG++ + T E   +K G  SKKK
Sbjct: 811 MFMNTLRAPFYERMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKK 870

Query: 61  EGEVQMIGFNSRQQPYPNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYV------QNPRP 120
           EGEV  IGF +  +     G+ +Y    P      YINN S    + YV      + P+P
Sbjct: 871 EGEVHAIGFPNSGKHKSIFGLRKYEQNFP-----SYINNVSHIPYNSYVPAHTVSETPKP 930

Query: 121 TQSYQPRNQQNSPYVQG 131
             S  PR     P+VQG
Sbjct: 931 VNSNSPR-----PFVQG 937

[Close]

BLAST of Lcy04g003000 vs. ExPASy TrEMBL
Match: A0A5A7T5W6 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold86G00370 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 1.7e-15
Identity = 62/137 (45.26%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITD-TLESSTVKNGVPSKKK 60
           MF+NTL++PFY++MIG+ASTNFSDI+ I ERIEY IKHG++ + T E   +K G  SKKK
Sbjct: 274 MFMNTLRAPFYERMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGRIKKGTISKKK 333

Query: 61  EGEVQMIGFNSRQQPYPNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYV------QNPRP 120
           EGEV  IGF +  +     G  +Y    P      YI+N S    + YV      + P+P
Sbjct: 334 EGEVHAIGFPNSGKHKSIFGQRKYEQNFP-----SYISNVSHIPYNSYVPAHTVSETPKP 393

Query: 121 TQSYQPRNQQNSPYVQG 131
             S  PR     P+VQG
Sbjct: 394 VNSNSPR-----PFVQG 400

[Close]

BLAST of Lcy04g003000 vs. NCBI nr
Match: XP_022155098.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica charantia])

HSP 1 Score: 139.4 bits (350), Expect = 2.6e-29
Identity = 85/155 (54.84%), Postives = 102/155 (65.81%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIGSAST+FSDI+TI ERIEY + HG+IT T+ ESST K    SKKK
Sbjct: 302 MFINTLKHPFYDRMIGSASTSFSDILTIGERIEYGVXHGRITSTVGESSTXKXXTSSKKK 361

Query: 61  EGEVQMIGFNS---RQQPY-PNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYVQNPRPTQ 120
           EGEVQM+G +    RQ PY        Y+YP PY Y QPY+N  + QY++     P  +Q
Sbjct: 362 EGEVQMVGADRHVWRQPPYGKTXXYAPYYYPSPYGYNQPYVNXATFQYTASQNFRPPASQ 421

Query: 121 SYQPRN-QQNSPYVQGHQNN----KEEQLDIPPKT 146
            +QPR  QQN+ Y QG QNN    K+ Q D  P T
Sbjct: 422 GFQPRGYQQNTVYTQGQQNNRSTRKQSQFDPIPMT 456

[Close]

BLAST of Lcy04g003000 vs. NCBI nr
Match: XP_022147189.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia])

HSP 1 Score: 133.3 bits (334), Expect = 1.8e-27
Identity = 88/168 (52.38%), Postives = 105/168 (62.50%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIGSASTNFSDIMTI ERIEY ++HG+IT T  E    K    SKKK
Sbjct: 229 MFINTLKHPFYDRMIGSASTNFSDIMTIGERIEYGVRHGRITSTTDEPLAAKKASHSKKK 288

Query: 61  EGEVQMIGFNS---RQQPYPNAGVPQ---YHYPPPYAYPQPYINNTSAQYSSPYVQNPRP 120
           EGEVQM+G +    +QQPY     PQ   Y+YP PY Y QP++NN ++ Y     QN RP
Sbjct: 289 EGEVQMVGADRHSWKQQPYRR--TPQYSPYYYPTPYGYNQPFVNNATSHYYPYASQNFRP 348

Query: 121 -----------TQSYQPRNQQ-NSPYVQGHQNN----KEEQLDIPPKT 146
                      +Q++QPR QQ N+ Y QG QNN    K+ Q D  P T
Sbjct: 349 PASQNFQLTPTSQNFQPRGQQHNTFYTQGQQNNRGARKQTQFDPIPMT 394

[Close]

BLAST of Lcy04g003000 vs. NCBI nr
Match: XP_022158986.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia])

HSP 1 Score: 130.6 bits (327), Expect = 1.2e-26
Identity = 84/166 (50.60%), Postives = 103/166 (62.05%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITDTL-ESSTVKNGVPSKKK 60
           MFINTLK PFYD+MIG+ASTNFSDIMTI ERIEY ++HG+IT T+ E    K    SKKK
Sbjct: 189 MFINTLKHPFYDRMIGNASTNFSDIMTIGERIEYGVRHGRITSTVDEPLAAKKASHSKKK 248

Query: 61  EGEVQMIGFNS---RQQPYPNA-GVPQYHYPPPYAYPQPYINNTSAQYSSPYVQNPRP-- 120
           EGEVQM+G +    +QQPY        Y+YP PY Y QP++NN ++ YS    QN RP  
Sbjct: 249 EGEVQMVGADRHSWKQQPYSRTPRYTPYYYPTPYGYNQPFVNNATSHYSPYTFQNFRPPA 308

Query: 121 ---------TQSYQPRNQQ-NSPYVQGHQNN----KEEQLDIPPKT 146
                    +Q++QPR QQ N+ Y Q  Q N    K+ Q D  P T
Sbjct: 309 SQNFQPTPASQNFQPRGQQHNTLYTQEQQTNRGARKQTQFDPIPMT 354

[Close]

BLAST of Lcy04g003000 vs. NCBI nr
Match: KAA0036933.1 (uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa])

HSP 1 Score: 95.1 bits (235), Expect = 5.6e-16
Identity = 63/137 (45.99%), Postives = 82/137 (59.85%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITD-TLESSTVKNGVPSKKK 60
           MF+NTL++PFY++MIG+ASTNFSDI+ I ERIEY IKHG++ + T E   +K G  SKKK
Sbjct: 811 MFMNTLRAPFYERMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGGIKKGTISKKK 870

Query: 61  EGEVQMIGFNSRQQPYPNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYV------QNPRP 120
           EGEV  IGF +  +     G+ +Y    P      YINN S    + YV      + P+P
Sbjct: 871 EGEVHAIGFPNSGKHKSIFGLRKYEQNFP-----SYINNVSHIPYNSYVPAHTVSETPKP 930

Query: 121 TQSYQPRNQQNSPYVQG 131
             S  PR     P+VQG
Sbjct: 931 VNSNSPR-----PFVQG 937

[Close]

BLAST of Lcy04g003000 vs. NCBI nr
Match: KAA0036957.1 (RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-15
Identity = 62/137 (45.26%), Postives = 81/137 (59.12%), Query Frame = 0


Query: 1   MFINTLKSPFYDKMIGSASTNFSDIMTIRERIEYEIKHGKITD-TLESSTVKNGVPSKKK 60
           MF+NTL++PFY++MIG+ASTNFSDI+ I ERIEY IKHG++ + T E   +K G  SKKK
Sbjct: 274 MFMNTLRAPFYERMIGNASTNFSDIIVIGERIEYGIKHGRLAEATTEYGRIKKGTISKKK 333

Query: 61  EGEVQMIGFNSRQQPYPNAGVPQYHYPPPYAYPQPYINNTSAQYSSPYV------QNPRP 120
           EGEV  IGF +  +     G  +Y    P      YI+N S    + YV      + P+P
Sbjct: 334 EGEVHAIGFPNSGKHKSIFGQRKYEQNFP-----SYISNVSHIPYNSYVPAHTVSETPKP 393

Query: 121 TQSYQPRNQQNSPYVQG 131
             S  PR     P+VQG
Sbjct: 394 VNSNSPR-----PFVQG 400

The following BLAST results are available for this feature:

BLAST of Lcy04g003000 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g003000 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DM29	1.2e-29	54.84	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231 OS=Momordica charantia...	[more]
A0A6J1D099	8.9e-28	52.38	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111016200 PE=4 SV=1	[more]
A0A6J1E2J7	5.8e-27	50.60	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111025431 PE=4 SV=1	[more]
A0A5A7T1W2	2.7e-16	45.99	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7T5W6	1.7e-15	45.26	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]

BLAST of Lcy04g003000 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022155098.1	2.6e-29	54.84	LOW QUALITY PROTEIN: uncharacterized protein LOC111022231, partial [Momordica ch...	[more]
XP_022147189.1	1.8e-27	52.38	LOW QUALITY PROTEIN: uncharacterized protein LOC111016200 [Momordica charantia]	[more]
XP_022158986.1	1.2e-26	50.60	LOW QUALITY PROTEIN: uncharacterized protein LOC111025431 [Momordica charantia]	[more]
KAA0036933.1	5.6e-16	45.99	uncharacterized protein E6C27_scaffold86G00060 [Cucumis melo var. makuwa]	[more]
KAA0036957.1	3.6e-15	45.26	RNA-directed DNA polymerase (Reverse transcriptase), Ribonuclease H-like protein...	[more]

BLAST of Lcy04g003000 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 94..136
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 69..155

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g003000.1	Lcy04g003000.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071897	DNA biosynthetic process
molecular_function	GO:0034061	DNA polymerase activity
molecular_function	GO:0003676	nucleic acid binding