Lcy04g002930 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002930
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotransposon protein
LocationChr04: 23243886 .. 23244149 (+)
RNA-Seq ExpressionLcy04g002930
SyntenyLcy04g002930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCGTTCGTTTAGAGCTCGGAGACACACGTGGACGAAGAACGAGGACGTGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCACATGGGCGGTTGGAGGTCCGATAATGGGACGTTTAGATCTGGGTATCAAGTGCAACTGGAACACTTGATGAGGGAGAAACTGCCTGGACGGGACGTTCCAGCACAAAGTTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAAGCAATCGTAGAGATGATGGGTCCTTGA

mRNA sequence

ATGACCCGTTCGTTTAGAGCTCGGAGACACACGTGGACGAAGAACGAGGACGTGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCACATGGGCGGTTGGAGGTCCGATAATGGGACGTTTAGATCTGGGTATCAAGTGCAACTGGAACACTTGATGAGGGAGAAACTGCCTGGACGGGACGTTCCAGCACAAAGTTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAAGCAATCGTAGAGATGATGGGTCCTTGA

Coding sequence (CDS)

ATGACCCGTTCGTTTAGAGCTCGGAGACACACGTGGACGAAGAACGAGGACGTGAAGCTTGTGGAGTCCCTCGTGTCCTTAGTTCACATGGGCGGTTGGAGGTCCGATAATGGGACGTTTAGATCTGGGTATCAAGTGCAACTGGAACACTTGATGAGGGAGAAACTGCCTGGACGGGACGTTCCAGCACAAAGTTGCATTGAATCCAGGGTTCGCACCCTGAAGAAACAATACCAAGCAATCGTAGAGATGATGGGTCCTTGA

Protein sequence

MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRDVPAQSCIESRVRTLKKQYQAIVEMMGP
Homology
[Close]
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match: A0A5D3CQS4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold5G00390 PE=4 SV=1)

HSP 1 Score: 109.0 bits (271), Expect = 1.0e-20
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M  S RA +HTWTK E+ KLVE LV LV  GGWRS+NGTFR GY  QL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          +     I+ RV++LKK YQAI EM GP
Sbjct: 61 IQGSPTIDYRVKSLKKTYQAIAEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match: A0A5A7TFA4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00550 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 2.3e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WT+ E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAIVEM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIVEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match: A0A5A7UWW9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00480 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAI EM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match: A0A5A7TEB4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold95G00560 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S R+ RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRSPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAIVEM GP
Sbjct: 61 VRATTVIDCRIKTLKQTFQAIVEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match: A0A5A7VKT2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold538G001150 PE=4 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 2.9e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAI EM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. NCBI nr
Match: KAA0066605.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 109.0 bits (271), Expect = 2.1e-20
Identity = 51/87 (58.62%), Postives = 61/87 (70.11%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M  S RA +HTWTK E+ KLVE LV LV  GGWRS+NGTFR GY  QL+ +M EKLP  +
Sbjct: 1  MASSSRAPKHTWTKEEEAKLVECLVELVSAGGWRSNNGTFRPGYLAQLQRMMAEKLPDTN 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          +     I+ RV++LKK YQAI EM GP
Sbjct: 61 IQGSPTIDYRVKSLKKTYQAIAEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.8 bits (268), Expect = 4.7e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WT+ E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAIVEM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIVEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. NCBI nr
Match: KAA0041774.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK27062.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 51/87 (58.62%), Postives = 63/87 (72.41%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S R+ RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRSPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAIVEM GP
Sbjct: 61 VRATTVIDCRIKTLKQTFQAIVEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. NCBI nr
Match: KAA0059630.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVEHLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAI EM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGP 87

[Close]
BLAST of Lcy04g002930 vs. NCBI nr
Match: TYK20986.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 107.5 bits (267), Expect = 6.1e-20
Identity = 51/87 (58.62%), Postives = 62/87 (71.26%), Query Frame = 0 

Query: 1  MTRSFRARRHTWTKNEDVKLVESLVSLVHMGGWRSDNGTFRSGYQVQLEHLMREKLPGRD 60
          M+ S RA RH WTK E+  LVE L+ LV MGGW+SDNGTFR GY  QL  +M EKLPG  
Sbjct: 1  MSTSNRAPRHVWTKEEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRIMAEKLPGCQ 60

Query: 61 VPAQSCIESRVRTLKKQYQAIVEMMGP 88
          V A + I+ R++TLK+ +QAI EM GP
Sbjct: 61 VRATTVIDCRIKTLKRTFQAIAEMRGP 87

The following BLAST results are available for this feature:
BLAST of Lcy04g002930 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CQS41.0e-2058.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TFA42.3e-2058.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7UWW92.9e-2058.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TEB42.9e-2058.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7VKT22.9e-2058.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of Lcy04g002930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0066605.12.1e-2058.62retrotransposon protein [Cucumis melo var. makuwa] >TYK14213.1 retrotransposon p... [more]
KAA0041588.14.7e-2058.62retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041774.16.1e-2058.62retrotransposon protein [Cucumis melo var. makuwa] >TYK27062.1 retrotransposon p... [more]
KAA0059630.16.1e-2058.62retrotransposon protein [Cucumis melo var. makuwa] >TYK08162.1 retrotransposon p... [more]
TYK20986.16.1e-2058.62retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lcy04g002930 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 4..86
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 4..86

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002930.1Lcy04g002930.1mRNA