Lcy04g002900 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g002900
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CDP-diacylglycerol synthase
Location	Chr04: 23221857 .. 23222456 (+)
RNA-Seq Expression	Lcy04g002900
Synteny	Lcy04g002900

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTCGGCCAAATTTGTCTTATATATCTCTCAATTACCATCCTTTCCTTGTCATGGACTCATGGCCTTGTTTACAAACATGTATAGGCTGGAAGACAGTGACATCATGAAGAATGAGGAAAACACCGGGCTTATAGATTTTCTCAAAGTTCTTCCTCCTGTAGAGTTCTGTTGCATATATGGTTCGACTTTGCACCCAAACAATCATGACAAGGTTTTATTTGGGTTTCTTTTTCGTCCTTTTTCTTTATACATGTATTATTTCATACTTGTAACTGCAATTTTTTTGTTTTGGTTTAACTTTGGATCGGTAGTCAAAAATGGTTGACCTTATTCTTGGCGTATCTGATCCTCAAAAATGGCACGAAAAGGTAAATCTTGAAAAGTGATTACTATTTTAGTGTGCATTATAACATGATTTGGTACTGCCTTATTTCTACTAACTTATTTTATTCATCCTGCAACCTAGAACATTCAATTAAACAAAGATCACTATGCCTCATGGATGGTGCACCTTGGAGGGGGGAAACTAGTAATGCAACCCCTCTCTTTTTCTGAACTCTCTTTCTATCACTGCCCCTGGTGGCCACTTCTCTAA

mRNA sequence

ATGTTCTCGGCCAAATTTGTCTTATATATCTCTCAATTACCATCCTTTCCTTGTCATGGACTCATGGCCTTGTTTACAAACATGTATAGGCTGGAAGACAGTGACATCATGAAGAATGAGGAAAACACCGGGCTTATAGATTTTCTCAAAGTTCTTCCTCCTGTAGAGTTCTGTTGCATATATGGTTCGACTTTGCACCCAAACAATCATGACAAGTCAAAAATGGTTGACCTTATTCTTGGCGTATCTGATCCTCAAAAATGGCACGAAAAGAACATTCAATTAAACAAAGATCACTATGCCTCATGGATGGTGCACCTTGGAGGGGGGAAACTAGTAATGCAACCCCTCTCTTTTTCTGAACTCTCTTTCTATCACTGCCCCTGGTGGCCACTTCTCTAA

Coding sequence (CDS)

ATGTTCTCGGCCAAATTTGTCTTATATATCTCTCAATTACCATCCTTTCCTTGTCATGGACTCATGGCCTTGTTTACAAACATGTATAGGCTGGAAGACAGTGACATCATGAAGAATGAGGAAAACACCGGGCTTATAGATTTTCTCAAAGTTCTTCCTCCTGTAGAGTTCTGTTGCATATATGGTTCGACTTTGCACCCAAACAATCATGACAAGTCAAAAATGGTTGACCTTATTCTTGGCGTATCTGATCCTCAAAAATGGCACGAAAAGAACATTCAATTAAACAAAGATCACTATGCCTCATGGATGGTGCACCTTGGAGGGGGGAAACTAGTAATGCAACCCCTCTCTTTTTCTGAACTCTCTTTCTATCACTGCCCCTGGTGGCCACTTCTCTAA

Protein sequence

MFSAKFVLYISQLPSFPCHGLMALFTNMYRLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHEKNIQLNKDHYASWMVHLGGGKLVMQPLSFSELSFYHCPWWPLL

Homology

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BLAST of Lcy04g002900 vs. ExPASy TrEMBL
Match: A0A6J1KRR6 (CDP-diacylglycerol synthase OS=Cucurbita maxima OX=3661 GN=LOC111497050 PE=3 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 1.1e-39
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 31  LEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHE 90
           LEDS+IMKN E+TGL+DFLKVLPPVEFCC+YGSTLHPNNHDKSKMVDLILGVSDPQKWHE
Sbjct: 2   LEDSEIMKNVEDTGLMDFLKVLPPVEFCCMYGSTLHPNNHDKSKMVDLILGVSDPQKWHE 61

Query: 91  KNIQLNKDHYASWMVHLGGGKLVMQ 116
           KNIQLNKDHYASWMV+ GGGKLV +
Sbjct: 62  KNIQLNKDHYASWMVYFGGGKLVTE 86

[Close]

BLAST of Lcy04g002900 vs. ExPASy TrEMBL
Match: A0A6J1CXL3 (CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 30  RLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWH 89
           R EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWH
Sbjct: 14  RTEDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWH 73

Query: 90  EKNIQLNKDHYASWMVHLGGGKLVMQ 116
           EKNIQLNKDHYASWMV+LGGGKLV +
Sbjct: 74  EKNIQLNKDHYASWMVYLGGGKLVTE 99

[Close]

BLAST of Lcy04g002900 vs. ExPASy TrEMBL
Match: A0A6J1CZY1 (CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 SV=1)

HSP 1 Score: 170.6 bits (431), Expect = 4.3e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 30  RLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWH 89
           R EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWH
Sbjct: 14  RTEDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWH 73

Query: 90  EKNIQLNKDHYASWMVHLGGGKLVMQ 116
           EKNIQLNKDHYASWMV+LGGGKLV +
Sbjct: 74  EKNIQLNKDHYASWMVYLGGGKLVTE 99

[Close]

BLAST of Lcy04g002900 vs. ExPASy TrEMBL
Match: A0A6J1CZR9 (CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 32  EDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHEK 91
           EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWHEK
Sbjct: 4   EDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWHEK 63

Query: 92  NIQLNKDHYASWMVHLGGGKLVMQ 116
           NIQLNKDHYASWMV+LGGGKLV +
Sbjct: 64  NIQLNKDHYASWMVYLGGGKLVTE 87

[Close]

BLAST of Lcy04g002900 vs. ExPASy TrEMBL
Match: A0A6J1CYH3 (CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.3e-38
Identity = 76/84 (90.48%), Postives = 79/84 (94.05%), Query Frame = 0


Query: 32  EDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHEK 91
           EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWHEK
Sbjct: 23  EDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWHEK 82

Query: 92  NIQLNKDHYASWMVHLGGGKLVMQ 116
           NIQLNKDHYASWMV+LGGGKLV +
Sbjct: 83  NIQLNKDHYASWMVYLGGGKLVTE 106

[Close]

BLAST of Lcy04g002900 vs. NCBI nr
Match: KAG7026386.1 (Phosphatidate cytidylyltransferase, mitochondrial, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 180.6 bits (457), Expect = 8.6e-42
Identity = 80/95 (84.21%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 21  LMALFTNMYRLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLIL 80
           ++A    MYRLEDS+IMKN E+TGL+DFLKVLPPVEFCC+YGSTLHPNNHDKSKMVDLIL
Sbjct: 35  ILARVMTMYRLEDSEIMKNVEDTGLMDFLKVLPPVEFCCMYGSTLHPNNHDKSKMVDLIL 94

Query: 81  GVSDPQKWHEKNIQLNKDHYASWMVHLGGGKLVMQ 116
           GVSDPQKWHEKNIQLNKDHYASWMV+ GGGKLV +
Sbjct: 95  GVSDPQKWHEKNIQLNKDHYASWMVYFGGGKLVTE 129

[Close]

BLAST of Lcy04g002900 vs. NCBI nr
Match: XP_023003435.1 (phosphatidate cytidylyltransferase, mitochondrial isoform X1 [Cucurbita maxima])

HSP 1 Score: 172.6 bits (436), Expect = 2.4e-39
Identity = 76/85 (89.41%), Postives = 82/85 (96.47%), Query Frame = 0


Query: 31  LEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHE 90
           LEDS+IMKN E+TGL+DFLKVLPPVEFCC+YGSTLHPNNHDKSKMVDLILGVSDPQKWHE
Sbjct: 2   LEDSEIMKNVEDTGLMDFLKVLPPVEFCCMYGSTLHPNNHDKSKMVDLILGVSDPQKWHE 61

Query: 91  KNIQLNKDHYASWMVHLGGGKLVMQ 116
           KNIQLNKDHYASWMV+ GGGKLV +
Sbjct: 62  KNIQLNKDHYASWMVYFGGGKLVTE 86

[Close]

BLAST of Lcy04g002900 vs. NCBI nr
Match: KAE8647783.1 (hypothetical protein Csa_002836 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 28  MYRLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQK 87
           MYR ED D MKN+ENT LI FLK LPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQK
Sbjct: 1   MYRREDGDTMKNKENTELIAFLKELPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQK 60

Query: 88  WHEKNIQLNKDHYASWMVHLGGGKLV 114
           WHEKNI+LNKDHYASWMV+LGGGKLV
Sbjct: 61  WHEKNIRLNKDHYASWMVYLGGGKLV 86

[Close]

BLAST of Lcy04g002900 vs. NCBI nr
Match: XP_022146572.1 (phosphatidate cytidylyltransferase, mitochondrial isoform X3 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 8.9e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 30  RLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWH 89
           R EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWH
Sbjct: 14  RTEDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWH 73

Query: 90  EKNIQLNKDHYASWMVHLGGGKLVMQ 116
           EKNIQLNKDHYASWMV+LGGGKLV +
Sbjct: 74  EKNIQLNKDHYASWMVYLGGGKLVTE 99

[Close]

BLAST of Lcy04g002900 vs. NCBI nr
Match: XP_022146570.1 (phosphatidate cytidylyltransferase, mitochondrial isoform X1 [Momordica charantia])

HSP 1 Score: 170.6 bits (431), Expect = 8.9e-39
Identity = 77/86 (89.53%), Postives = 80/86 (93.02%), Query Frame = 0


Query: 30  RLEDSDIMKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWH 89
           R EDSDI K  E+TGLIDFLKVLPPVEFCCIYGSTLHPNNH KSKMVDLILGVSDPQKWH
Sbjct: 14  RTEDSDITKKREDTGLIDFLKVLPPVEFCCIYGSTLHPNNHYKSKMVDLILGVSDPQKWH 73

Query: 90  EKNIQLNKDHYASWMVHLGGGKLVMQ 116
           EKNIQLNKDHYASWMV+LGGGKLV +
Sbjct: 74  EKNIQLNKDHYASWMVYLGGGKLVTE 99

[Close]

BLAST of Lcy04g002900 vs. TAIR 10
Match: AT3G47630.2 (CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 128.6 bits (322), Expect = 3.6e-30
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 0


Query: 37  MKNEENTGLIDFLKVLPPVEFCCIYGSTLHPNNHDKSKMVDLILGVSDPQKWHEKNIQLN 96
           M+  +   L  FL VLPPV+FCC+YGSTLHPNN DKSKMVD ILGVSDP KWH  N+++N
Sbjct: 1   METTQKDELSSFLSVLPPVDFCCVYGSTLHPNNQDKSKMVDYILGVSDPIKWHSANLKMN 60

Query: 97  KDHYASWMVHLGGGKLV 114
            DHYASWMVHLGG +L+
Sbjct: 61  SDHYASWMVHLGGARLI 77

[Close]

BLAST of Lcy04g002900 vs. TAIR 10
Match: AT3G47630.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has 325 Blast hits to 325 proteins in 172 species: Archae - 0; Bacteria - 0; Metazoa - 109; Fungi - 140; Plants - 43; Viruses - 0; Other Eukaryotes - 33 (source: NCBI BLink). )

HSP 1 Score: 74.7 bits (182), Expect = 6.2e-14
Identity = 30/42 (71.43%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 72  KSKMVDLILGVSDPQKWHEKNIQLNKDHYASWMVHLGGGKLV 114
           +SKMVD ILGVSDP KWH  N+++N DHYASWMVHLGG +L+
Sbjct: 24  QSKMVDYILGVSDPIKWHSANLKMNSDHYASWMVHLGGARLI 65

The following BLAST results are available for this feature:

BLAST of Lcy04g002900 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g002900 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KRR6	1.1e-39	89.41	CDP-diacylglycerol synthase OS=Cucurbita maxima OX=3661 GN=LOC111497050 PE=3 SV=...	[more]
A0A6J1CXL3	4.3e-39	89.53	CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 ...	[more]
A0A6J1CZY1	4.3e-39	89.53	CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 ...	[more]
A0A6J1CZR9	1.3e-38	90.48	CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 ...	[more]
A0A6J1CYH3	1.3e-38	90.48	CDP-diacylglycerol synthase OS=Momordica charantia OX=3673 GN=LOC111015753 PE=3 ...	[more]

BLAST of Lcy04g002900 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7026386.1	8.6e-42	84.21	Phosphatidate cytidylyltransferase, mitochondrial, partial [Cucurbita argyrosper...	[more]
XP_023003435.1	2.4e-39	89.41	phosphatidate cytidylyltransferase, mitochondrial isoform X1 [Cucurbita maxima]	[more]
KAE8647783.1	5.2e-39	89.53	hypothetical protein Csa_002836 [Cucumis sativus]	[more]
XP_022146572.1	8.9e-39	89.53	phosphatidate cytidylyltransferase, mitochondrial isoform X3 [Momordica charanti...	[more]
XP_022146570.1	8.9e-39	89.53	phosphatidate cytidylyltransferase, mitochondrial isoform X1 [Momordica charanti...	[more]

BLAST of Lcy04g002900 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G47630.2	3.6e-30	68.83	CONTAINS InterPro DOMAIN/s: Mitochondrial matrix Mmp37 (InterPro:IPR015222); Has...	[more]
AT3G47630.1	6.2e-14	71.43	FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015222	Phosphatidate cytidylyltransferase, mitochondrial	PFAM	PF09139	Tam41_Mmp37	coord: 49..112 e-value: 5.8E-16 score: 58.7
IPR015222	Phosphatidate cytidylyltransferase, mitochondrial	PANTHER	PTHR13619	UNCHARACTERIZED	coord: 38..114
None	No IPR available	PANTHER	PTHR13619:SF1	BNAC03G57080D PROTEIN	coord: 38..114

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g002900.1	Lcy04g002900.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032049	cardiolipin biosynthetic process
biological_process	GO:0016024	CDP-diacylglycerol biosynthetic process
cellular_component	GO:0005743	mitochondrial inner membrane
molecular_function	GO:0004605	phosphatidate cytidylyltransferase activity