Lcy04g002860 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g002860
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr04: 23217672 .. 23218298 (-)
RNA-Seq Expression	Lcy04g002860
Synteny	Lcy04g002860

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCAACAACAGAAGAAAAAGCTCCATTATTGAAATCATCTCAGCATCTGGAAGTAGTCTCATAGCAGATGAAGATATTGAAAAGGAATTCTTAGATTTCTACCAGAATCTTTATACAAAACAGAACAGCAGCTCTTCCCTTCCGAATATCGATGATTGGAGCCCCATTTCCCCCGAGCAACAAGCTGCGTTAGAAGTCCCTTTTTCCGAAGCAGAGATATACAGGGCAGTACAAGACTTGGGCTCAAACAAGACCCCGGGTCCGGACGGTTTTACAGCCGAATTCTTTAAAAAATCTTGGAACACCCTCAAGGATGACATAAAGGGAGTGTTCAATGATTTTTTTAAGAATGGTATTATTAATGCCAGCCTAAACGAAACTTATATTTGTCTCATCCCAAAAAGGATAGGTGCCAAATTCGTGGGGGACTGCATACCTATTAGTTTGACTACTTGCCTATACAAGATAATTGCTCGGGTCCTCTCAGAACGCCTTAAAACGGTCCTTCCGGACACAATCTCTCCCTACCAATCAGCCTTTGTGGGGAATAGACAGATCATGGATGCCTCTTTGATTGCTAATGAATTAATCGACGAATGGATAGAAAAAAGCGCAAGGGGGTAG

mRNA sequence

ATGGCCAACAACAGAAGAAAAAGCTCCATTATTGAAATCATCTCAGCATCTGGAAGTAGTCTCATAGCAGATGAAGATATTGAAAAGGAATTCTTAGATTTCTACCAGAATCTTTATACAAAACAGAACAGCAGCTCTTCCCTTCCGAATATCGATGATTGGAGCCCCATTTCCCCCGAGCAACAAGCTGCGTTAGAAGTCCCTTTTTCCGAAGCAGAGATATACAGGGCAGTACAAGACTTGGGCTCAAACAAGACCCCGGGTCCGGACGGTTTTACAGCCGAATTCTTTAAAAAATCTTGGAACACCCTCAAGGATGACATAAAGGGAGTGTTCAATGATTTTTTTAAGAATGGTATTATTAATGCCAGCCTAAACGAAACTTATATTTGTCTCATCCCAAAAAGGATAGGTGCCAAATTCGTGGGGGACTGCATACCTATTAGTTTGACTACTTGCCTATACAAGATAATTGCTCGGGTCCTCTCAGAACGCCTTAAAACGGTCCTTCCGGACACAATCTCTCCCTACCAATCAGCCTTTGTGGGGAATAGACAGATCATGGATGCCTCTTTGATTGCTAATGAATTAATCGACGAATGGATAGAAAAAAGCGCAAGGGGGTAG

Coding sequence (CDS)

ATGGCCAACAACAGAAGAAAAAGCTCCATTATTGAAATCATCTCAGCATCTGGAAGTAGTCTCATAGCAGATGAAGATATTGAAAAGGAATTCTTAGATTTCTACCAGAATCTTTATACAAAACAGAACAGCAGCTCTTCCCTTCCGAATATCGATGATTGGAGCCCCATTTCCCCCGAGCAACAAGCTGCGTTAGAAGTCCCTTTTTCCGAAGCAGAGATATACAGGGCAGTACAAGACTTGGGCTCAAACAAGACCCCGGGTCCGGACGGTTTTACAGCCGAATTCTTTAAAAAATCTTGGAACACCCTCAAGGATGACATAAAGGGAGTGTTCAATGATTTTTTTAAGAATGGTATTATTAATGCCAGCCTAAACGAAACTTATATTTGTCTCATCCCAAAAAGGATAGGTGCCAAATTCGTGGGGGACTGCATACCTATTAGTTTGACTACTTGCCTATACAAGATAATTGCTCGGGTCCTCTCAGAACGCCTTAAAACGGTCCTTCCGGACACAATCTCTCCCTACCAATCAGCCTTTGTGGGGAATAGACAGATCATGGATGCCTCTTTGATTGCTAATGAATTAATCGACGAATGGATAGAAAAAAGCGCAAGGGGGTAG

Protein sequence

MANNRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINASLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVGNRQIMDASLIANELIDEWIEKSARG

Homology

[Close]

BLAST of Lcy04g002860 vs. ExPASy Swiss-Prot
Match: P14381 (Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 63/194 (32.47%), Postives = 101/194 (52.06%), Query Frame = 0


Query: 7   KSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQN-SSSSLPNIDDWSP-ISPEQQAA 66
           +  I  + +  G+ L   E I      FYQNL++    S  +   + D  P +S  ++  
Sbjct: 385 RKQITCLFAEDGTPLEDPEAIRDRARSFYQNLFSPDPISPDACEELWDGLPVVSERRKER 444

Query: 67  LEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINAS 126
           LE P +  E+ +A++ +  NK+PG DG T EFF+  W+TL  D   V  + FK G +  S
Sbjct: 445 LETPITLDELSQALRLMPHNKSPGLDGLTIEFFQFFWDTLGPDFHRVLTEAFKKGELPLS 504

Query: 127 LNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVGN 186
                + L+PK+   + + +  P+SL +  YKI+A+ +S RLK+VL + I P QS  V  
Sbjct: 505 CRRAVLSLLPKKGDLRLIKNWRPVSLLSTDYKIVAKAISLRLKSVLAEVIHPDQSYTVPG 564

Query: 187 RQIMDASLIANELI 199
           R I D   +  +L+
Sbjct: 565 RTIFDNVFLIRDLL 578

[Close]

BLAST of Lcy04g002860 vs. ExPASy Swiss-Prot
Match: P08548 (LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 57/197 (28.93%), Postives = 97/197 (49.24%), Query Frame = 0


Query: 1   MANNRRKSSIIEIISA--SGSSLIADE--DIEKEFLDFYQNLYTKQNSSSSLPNIDDW-- 60
           +AN  RK  +  +IS+  +G+  I  +  +I+K   ++Y+ LY+  +   +L  ID +  
Sbjct: 376 LANLTRKKRVKSLISSIRNGNDEITTDPSEIQKILNEYYKKLYS--HKYENLKEIDQYLE 435

Query: 61  ----SPISPEQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKG 120
                 +S ++   L  P S +EI   +Q+L   K+PGPDGFT+EF++     L   +  
Sbjct: 436 ACHLPRLSQKEVEMLNRPISSSEIASTIQNLPKKKSPGPDGFTSEFYQTFKEELVPILLN 495

Query: 121 VFNDFFKNGIINASLNETYICLIPK-RIGAKFVGDCIPISLTTCLYKIIARVLSERLKTV 180
           +F +  K GI+  +  E  I LIPK         +  PISL     KI+ ++L+ R++  
Sbjct: 496 LFQNIEKEGILPNTFYEANITLIPKPGKDPTRKENYRPISLMNIDAKILNKILTNRIQQH 555

Query: 181 LPDTISPYQSAFVGNRQ 187
           +   I   Q  F+   Q
Sbjct: 556 IKKIIHHDQVGFIPGSQ 570

[Close]

BLAST of Lcy04g002860 vs. ExPASy Swiss-Prot
Match: P11369 (LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE=1 SV=2)

HSP 1 Score: 70.1 bits (170), Expect = 3.4e-11
Identity = 57/197 (28.93%), Postives = 91/197 (46.19%), Query Frame = 0


Query: 4   NRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWS-------- 63
           +R K  I +I +  G      E+I+     FY+ LY     S+ L N+D+          
Sbjct: 391 HRDKILINKIRNEKGDITTDPEEIQNTIRSFYKRLY-----STKLENLDEMDKFLDRYQV 450

Query: 64  -PISPEQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFND 123
             ++ +Q   L  P S  EI   +  L + K+PGPDGF+AEF++    T K+D+  + + 
Sbjct: 451 PKLNQDQVDHLNSPISPKEIEAVINSLPTKKSPGPDGFSAEFYQ----TFKEDLIPILHK 510

Query: 124 FFK----NGIINASLNETYICLIPK-RIGAKFVGDCIPISLTTCLYKIIARVLSERLKTV 183
            F      G +  S  E  I LIPK +     + +  PISL     KI+ ++L+ R++  
Sbjct: 511 LFHKIEVEGTLPNSFYEATITLIPKPQKDPTKIENFRPISLMNIDAKILNKILANRIQEH 570

Query: 184 LPDTISPYQSAFVGNRQ 187
           +   I P Q  F+   Q
Sbjct: 571 IKAIIHPDQVGFIPGMQ 578

[Close]

BLAST of Lcy04g002860 vs. ExPASy Swiss-Prot
Match: O00370 (LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 7.5e-11
Identity = 55/190 (28.95%), Postives = 90/190 (47.37%), Query Frame = 0


Query: 5   RRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDW------SPIS 64
           R K+ I  I +  G       +I+    ++Y++LY   N   +L  +D +        ++
Sbjct: 385 REKNQIDTIKNDKGDITTDPTEIQTTIREYYKHLYA--NKLENLEEMDTFLDTYTLPRLN 444

Query: 65  PEQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKN 124
            E+  +L  P + +EI   +  L + K+PGPDGFTAEF+++    L   +  +F    K 
Sbjct: 445 QEEVESLNRPITGSEIVAIINSLPTKKSPGPDGFTAEFYQRYKEELVPFLLKLFQSIEKE 504

Query: 125 GIINASLNETYICLIPK--RIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISP 184
           GI+  S  E  I LIPK  R   K   +  PISL     KI+ ++L+ R++  +   I  
Sbjct: 505 GILPNSFYEASIILIPKPGRDTTK-KENFRPISLMNIDAKILNKILANRIQQHIKKLIHH 564

Query: 185 YQSAFVGNRQ 187
            Q  F+   Q
Sbjct: 565 DQVGFIPGMQ 571

[Close]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL
Match: A0A5D3CA17 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1503G00050 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 4.5e-43
Identity = 95/205 (46.34%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 4    NRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQA 63
            N+RK+ I  I   +G+SL + +DI + F+  +QN+YTK++    L +   W+PIS   Q+
Sbjct: 979  NQRKNLIKSICDPAGTSLDSIDDISRTFISHFQNIYTKESYEEILIDNLSWNPISRLCQS 1038

Query: 64   ALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINA 123
             L  PF E+EI   +    + K PGPDG+T  F+KK W  LKDD+  VF DF K GI+N 
Sbjct: 1039 ELCKPFDESEIKSTIMSFSNEKAPGPDGYTMLFYKKHWPDLKDDLLNVFKDFHKAGIVNN 1098

Query: 124  SLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVG 183
            ++N T+I LI K+       D  PISLTT LYKI+A+ L+ RLK+ LPDTI+  Q AF+ 
Sbjct: 1099 NVNNTFIALISKKEKCSKPSDYRPISLTTSLYKIMAKALANRLKSALPDTIAENQMAFIK 1158

Query: 184  NRQIMDASLIANELIDEWIEKSARG 209
             RQI DA LIANE+ID W ++  +G
Sbjct: 1159 GRQINDAILIANEVIDTWKQRKIKG 1183

[Close]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL
Match: A0A5A7US62 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold280G003960 PE=4 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 7.7e-43
Identity = 95/205 (46.34%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 4    NRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQA 63
            N+RK+ I  I   +G+SL + +DI + F+  +QN+YTK++    L +   W+PIS   Q+
Sbjct: 979  NQRKNLIKSICDPAGTSLDSIDDISRTFISHFQNIYTKESYEEILIDNLSWNPISRLCQS 1038

Query: 64   ALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINA 123
             L  PF E+EI   +    + K PGPDG+T  F+KK W  LKDD+  VF DF K GI+N 
Sbjct: 1039 ELCKPFDESEIKSTIMSFSNEKAPGPDGYTMLFYKKHWPDLKDDLLNVFKDFHKAGIVNN 1098

Query: 124  SLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVG 183
            ++N T+I LI K+       D  PISLTT LYKI+A+ L+ RLK+ LPDTI+  Q AF+ 
Sbjct: 1099 NVNNTFIALISKKEKCSKPSDYRPISLTTSLYKIMAKALANRLKSALPDTIAENQMAFIK 1158

Query: 184  NRQIMDASLIANELIDEWIEKSARG 209
             RQI DA LIANE ID W ++  +G
Sbjct: 1159 GRQINDAILIANEAIDTWKQRKIKG 1183

[Close]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL
Match: A0A2P6QQZ3 (Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4g0393411 PE=4 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 1.0e-42
Identity = 97/209 (46.41%), Postives = 135/209 (64.59%), Query Frame = 0


Query: 1   MANNRRKSSIIEIISASGSSLIADED-IEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISP 60
           + N RRK ++IE +  S   ++ +ED IE+E + FY+NLY+ +   S       W+PIS 
Sbjct: 122 LVNGRRKRNVIEKLELSNGIVVEEEDLIEEEIIRFYKNLYSSKEEVSFGIEGLHWNPISV 181

Query: 61  EQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNG 120
           E+   LE PF E EI RAV +  + K+PGPDGF+    +++W  +K ++  V  +F  NG
Sbjct: 182 EKARWLETPFEEEEIKRAVFECDTVKSPGPDGFSFAVLQRNWEVVKREVLDVMAEFHTNG 241

Query: 121 IINASLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQS 180
           ++N   NETYICLIPK+  +  VGD  PISL T LYKIIA+VL+ RL+ VL DTIS  Q 
Sbjct: 242 VVNKVTNETYICLIPKKANSLKVGDYRPISLITSLYKIIAKVLAWRLREVLSDTISGAQG 301

Query: 181 AFVGNRQIMDASLIANELIDEWIEKSARG 209
           AF+  RQI+DA L+ANE++DE  +K   G
Sbjct: 302 AFIKGRQILDAVLVANEVVDETRKKKKEG 330

[Close]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 1.1e-41
Identity = 91/204 (44.61%), Postives = 127/204 (62.25%), Query Frame = 0


Query: 5   RRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQAA 64
           ++K  I ++I+  G + + D DI   F+  ++ +YT   +S    +  DW PIS   +  
Sbjct: 98  QKKCLISKVINNCGQNCLNDSDIVDAFIQHFEEIYTDNKNSQLFIDNRDWCPISNTNRCL 157

Query: 65  LEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINAS 124
           L+ PF+E+EI+  ++    NK PGPDGFT +F +KSW+ +K +I  +F DF  N  IN  
Sbjct: 158 LDKPFNESEIWLTLKSFTKNKAPGPDGFTMDFLQKSWSFMKHNICDIFKDFHSNHTINKV 217

Query: 125 LNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVGN 184
           +NET I LI K+   + V D  PISLTT +YK+IA+VL++RLK  LPDTIS  Q AFV  
Sbjct: 218 VNETLITLIAKKNNCETVSDFQPISLTTAIYKLIAKVLADRLKQTLPDTISELQMAFVKG 277

Query: 185 RQIMDASLIANELIDEWIEKSARG 209
           RQI +A LIANE +D W  K  RG
Sbjct: 278 RQITEAILIANEALDFWRNKKERG 301

[Close]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 179.5 bits (454), Expect = 1.5e-41
Identity = 92/204 (45.10%), Postives = 125/204 (61.27%), Query Frame = 0


Query: 5   RRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQAA 64
           ++K  I +II+  G + + D DI   F+  ++ +YT   +S    +  DW PIS      
Sbjct: 300 QKKCLISKIINICGQNCLNDSDIVDAFIQHFEEIYTDNRNSHLFIDNLDWCPISNTNSGL 359

Query: 65  LEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINAS 124
           L+ PF+EAEI+  ++    NK PGPDGFT +F +KSW+ +K +I  +F DF  N  IN  
Sbjct: 360 LDKPFNEAEIWLTLKSFAKNKAPGPDGFTMDFLQKSWSFMKQNICDIFKDFHSNHTINKV 419

Query: 125 LNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVGN 184
           +NET I  I K+   + V D  PISLTT +YK+IA+VL++RLK  LPDTIS  Q AFV  
Sbjct: 420 VNETLITFIAKKENCETVADFRPISLTTAIYKLIAKVLADRLKQTLPDTISESQMAFVKG 479

Query: 185 RQIMDASLIANELIDEWIEKSARG 209
           RQI +A LIANE +D W  K  RG
Sbjct: 480 RQITEAILIANEALDLWRNKKERG 503

[Close]

BLAST of Lcy04g002860 vs. NCBI nr
Match: XP_023518084.1 (uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 245.7 bits (626), Expect = 3.4e-61
Identity = 123/208 (59.13%), Postives = 158/208 (75.96%), Query Frame = 0


Query: 1   MANNRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPE 60
           MA  +RKS+I+EI+S  G SL+  ++I  EF+ FY +LYTK N+    P+  DWSPI  +
Sbjct: 1   MATKKRKSTIVEILSTQGISLVNKDEIVSEFVSFYTSLYTKDNALCEFPHDLDWSPIDQQ 60

Query: 61  QQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGI 120
           Q A+LEV F+E E+ +A+Q+LGS+KT GPDGFT+EFF+K WN ++ DI  VF+DFF+NG+
Sbjct: 61  QAASLEVAFTEEEVVKAIQNLGSDKTLGPDGFTSEFFQKCWNFMRVDIMRVFHDFFRNGV 120

Query: 121 INASLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSA 180
           IN +LNETYI LI K++ A+ V D  PISLTT LYKIIARVLSERLK VLP TI+  Q A
Sbjct: 121 INGNLNETYIYLISKKLDARTVADFRPISLTTGLYKIIARVLSERLKKVLPFTITRQQIA 180

Query: 181 FVGNRQIMDASLIANELIDEWIEKSARG 209
           FV  RQI+DA+L+ANELIDEW  K  +G
Sbjct: 181 FVEGRQILDATLMANELIDEWERKKQKG 208

[Close]

BLAST of Lcy04g002860 vs. NCBI nr
Match: TYK08190.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 184.5 bits (467), Expect = 9.3e-43
Identity = 95/205 (46.34%), Postives = 131/205 (63.90%), Query Frame = 0


Query: 4    NRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQA 63
            N+RK+ I  I   +G+SL + +DI + F+  +QN+YTK++    L +   W+PIS   Q+
Sbjct: 979  NQRKNLIKSICDPAGTSLDSIDDISRTFISHFQNIYTKESYEEILIDNLSWNPISRLCQS 1038

Query: 64   ALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINA 123
             L  PF E+EI   +    + K PGPDG+T  F+KK W  LKDD+  VF DF K GI+N 
Sbjct: 1039 ELCKPFDESEIKSTIMSFSNEKAPGPDGYTMLFYKKHWPDLKDDLLNVFKDFHKAGIVNN 1098

Query: 124  SLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVG 183
            ++N T+I LI K+       D  PISLTT LYKI+A+ L+ RLK+ LPDTI+  Q AF+ 
Sbjct: 1099 NVNNTFIALISKKEKCSKPSDYRPISLTTSLYKIMAKALANRLKSALPDTIAENQMAFIK 1158

Query: 184  NRQIMDASLIANELIDEWIEKSARG 209
             RQI DA LIANE+ID W ++  +G
Sbjct: 1159 GRQINDAILIANEVIDTWKQRKIKG 1183

[Close]

BLAST of Lcy04g002860 vs. NCBI nr
Match: KAA0057507.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.7 bits (465), Expect = 1.6e-42
Identity = 95/205 (46.34%), Postives = 130/205 (63.41%), Query Frame = 0


Query: 4    NRRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQA 63
            N+RK+ I  I   +G+SL + +DI + F+  +QN+YTK++    L +   W+PIS   Q+
Sbjct: 979  NQRKNLIKSICDPAGTSLDSIDDISRTFISHFQNIYTKESYEEILIDNLSWNPISRLCQS 1038

Query: 64   ALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINA 123
             L  PF E+EI   +    + K PGPDG+T  F+KK W  LKDD+  VF DF K GI+N 
Sbjct: 1039 ELCKPFDESEIKSTIMSFSNEKAPGPDGYTMLFYKKHWPDLKDDLLNVFKDFHKAGIVNN 1098

Query: 124  SLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVG 183
            ++N T+I LI K+       D  PISLTT LYKI+A+ L+ RLK+ LPDTI+  Q AF+ 
Sbjct: 1099 NVNNTFIALISKKEKCSKPSDYRPISLTTSLYKIMAKALANRLKSALPDTIAENQMAFIK 1158

Query: 184  NRQIMDASLIANELIDEWIEKSARG 209
             RQI DA LIANE ID W ++  +G
Sbjct: 1159 GRQINDAILIANEAIDTWKQRKIKG 1183

[Close]

BLAST of Lcy04g002860 vs. NCBI nr
Match: PRQ36601.1 (putative RNA-directed DNA polymerase [Rosa chinensis])

HSP 1 Score: 183.3 bits (464), Expect = 2.1e-42
Identity = 97/209 (46.41%), Postives = 135/209 (64.59%), Query Frame = 0


Query: 1   MANNRRKSSIIEIISASGSSLIADED-IEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISP 60
           + N RRK ++IE +  S   ++ +ED IE+E + FY+NLY+ +   S       W+PIS 
Sbjct: 122 LVNGRRKRNVIEKLELSNGIVVEEEDLIEEEIIRFYKNLYSSKEEVSFGIEGLHWNPISV 181

Query: 61  EQQAALEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNG 120
           E+   LE PF E EI RAV +  + K+PGPDGF+    +++W  +K ++  V  +F  NG
Sbjct: 182 EKARWLETPFEEEEIKRAVFECDTVKSPGPDGFSFAVLQRNWEVVKREVLDVMAEFHTNG 241

Query: 121 IINASLNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQS 180
           ++N   NETYICLIPK+  +  VGD  PISL T LYKIIA+VL+ RL+ VL DTIS  Q 
Sbjct: 242 VVNKVTNETYICLIPKKANSLKVGDYRPISLITSLYKIIAKVLAWRLREVLSDTISGAQG 301

Query: 181 AFVGNRQIMDASLIANELIDEWIEKSARG 209
           AF+  RQI+DA L+ANE++DE  +K   G
Sbjct: 302 AFIKGRQILDAVLVANEVVDETRKKKKEG 330

[Close]

BLAST of Lcy04g002860 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 179.9 bits (455), Expect = 2.3e-41
Identity = 91/204 (44.61%), Postives = 127/204 (62.25%), Query Frame = 0


Query: 5   RRKSSIIEIISASGSSLIADEDIEKEFLDFYQNLYTKQNSSSSLPNIDDWSPISPEQQAA 64
           ++K  I ++I+  G + + D DI   F+  ++ +YT   +S    +  DW PIS   +  
Sbjct: 98  QKKCLISKVINNCGQNCLNDSDIVDAFIQHFEEIYTDNKNSQLFIDNRDWCPISNTNRCL 157

Query: 65  LEVPFSEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINAS 124
           L+ PF+E+EI+  ++    NK PGPDGFT +F +KSW+ +K +I  +F DF  N  IN  
Sbjct: 158 LDKPFNESEIWLTLKSFTKNKAPGPDGFTMDFLQKSWSFMKHNICDIFKDFHSNHTINKV 217

Query: 125 LNETYICLIPKRIGAKFVGDCIPISLTTCLYKIIARVLSERLKTVLPDTISPYQSAFVGN 184
           +NET I LI K+   + V D  PISLTT +YK+IA+VL++RLK  LPDTIS  Q AFV  
Sbjct: 218 VNETLITLIAKKNNCETVSDFQPISLTTAIYKLIAKVLADRLKQTLPDTISELQMAFVKG 277

Query: 185 RQIMDASLIANELIDEWIEKSARG 209
           RQI +A LIANE +D W  K  RG
Sbjct: 278 RQITEAILIANEALDFWRNKKERG 301

[Close]

BLAST of Lcy04g002860 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 72.0 bits (175), Expect = 6.3e-13
Identity = 39/89 (43.82%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 70  SEAEIYRAVQDLGSNKTPGPDGFTAEFFKKSWNTLKDDIKGVFNDFFKNGIINASLNETY 129
           S+ EI  AV  +  NK PGPD FTAEFF +SW  +KD       +FF+ G +    N T 
Sbjct: 532 SDKEITAAVFAMPRNKAPGPDSFTAEFFWESWFVVKDSTIAAVKEFFRTGHLLKRFNATA 591

Query: 130 ICLIPKRIGAKFVGDCIPISLTTCLYKII 159
           I LIPK  G   +    P+S  T +YKII
Sbjct: 592 ITLIPKVTGVDQLSMFRPVSCCTVVYKII 620

The following BLAST results are available for this feature:

BLAST of Lcy04g002860 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P14381	2.3e-20	32.47	Transposon TX1 uncharacterized 149 kDa protein OS=Xenopus laevis OX=8355 PE=4 SV...	[more]
P08548	3.4e-11	28.93	LINE-1 reverse transcriptase homolog OS=Nycticebus coucang OX=9470 PE=4 SV=1	[more]
P11369	3.4e-11	28.93	LINE-1 retrotransposable element ORF2 protein OS=Mus musculus OX=10090 GN=Pol PE...	[more]
O00370	7.5e-11	28.95	LINE-1 retrotransposable element ORF2 protein OS=Homo sapiens OX=9606 PE=1 SV=1	[more]

BLAST of Lcy04g002860 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CA17	4.5e-43	46.34	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7US62	7.7e-43	46.34	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A2P6QQZ3	1.0e-42	46.41	Putative RNA-directed DNA polymerase OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr4...	[more]
A0A5A7TR15	1.1e-41	44.61	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3BJP3	1.5e-41	45.10	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy04g002860 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023518084.1	3.4e-61	59.13	uncharacterized protein LOC111781628 [Cucurbita pepo subsp. pepo]	[more]
TYK08190.1	9.3e-43	46.34	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0057507.1	1.6e-42	46.34	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
PRQ36601.1	2.1e-42	46.41	putative RNA-directed DNA polymerase [Rosa chinensis]	[more]
KAA0044556.1	2.3e-41	44.61	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy04g002860 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43760.1	6.3e-13	43.82	DNAse I-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33116	REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED	coord: 5..193
None	No IPR available	PANTHER	PTHR33116:SF38	OS01G0158850 PROTEIN	coord: 5..193

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g002860.1	Lcy04g002860.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0016740	transferase activity