![](http://cucurbitgenomics.org/sites/default/files/styles/slideshow/public/carousel/101322_web.jpg?itok=EG-G51x6)
Lcy04g002780 (gene) Sponge gourd (P93075) v1
Overview
Sequences
The following sequences are available for this feature:
Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA MEHLPCRQFLTSMSAEVKAHTLKPQQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNTVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQKFLTMQFETCYRDKIDVKTVADLIKDKWVEIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN Homology
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 68.9 bits (167), Expect = 8.7e-11 Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1) HSP 1 Score: 66.6 bits (161), Expect = 4.3e-10 Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1) HSP 1 Score: 66.2 bits (160), Expect = 5.6e-10 Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q6ZSG1 (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10 Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1) HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10 Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A6J1BQW1 (uncharacterized protein LOC111004784 OS=Momordica charantia OX=3673 GN=LOC111004784 PE=4 SV=1) HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46 Identity = 109/257 (42.41%), Postives = 159/257 (61.87%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A6J1HDB7 (probable E3 ubiquitin-protein ligase ZFP1 OS=Cucurbita moschata OX=3662 GN=LOC111461780 PE=4 SV=1) HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45 Identity = 105/241 (43.57%), Postives = 156/241 (64.73%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A5A7SPE2 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001670 PE=4 SV=1) HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36 Identity = 88/222 (39.64%), Postives = 128/222 (57.66%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A5D3C6D9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001660 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35 Identity = 88/222 (39.64%), Postives = 127/222 (57.21%), Query Frame = 0
BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A0A0K7L0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1) HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35 Identity = 87/229 (37.99%), Postives = 139/229 (60.70%), Query Frame = 0
BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_022131659.1 (uncharacterized protein LOC111004784 [Momordica charantia]) HSP 1 Score: 195.7 bits (496), Expect = 4.7e-46 Identity = 109/257 (42.41%), Postives = 159/257 (61.87%), Query Frame = 0
BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_022961194.1 (probable E3 ubiquitin-protein ligase ZFP1 [Cucurbita moschata]) HSP 1 Score: 191.4 bits (485), Expect = 8.8e-45 Identity = 105/241 (43.57%), Postives = 156/241 (64.73%), Query Frame = 0
BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_023516070.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo]) HSP 1 Score: 176.4 bits (446), Expect = 2.9e-40 Identity = 99/239 (41.42%), Postives = 152/239 (63.60%), Query Frame = 0
BLAST of Lcy04g002780 vs. NCBI nr
Match: KAE8645828.1 (hypothetical protein Csa_017274 [Cucumis sativus]) HSP 1 Score: 161.4 bits (407), Expect = 9.8e-36 Identity = 86/229 (37.55%), Postives = 134/229 (58.52%), Query Frame = 0
BLAST of Lcy04g002780 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa]) HSP 1 Score: 160.6 bits (405), Expect = 1.7e-35 Identity = 88/222 (39.64%), Postives = 128/222 (57.66%), Query Frame = 0
BLAST of Lcy04g002780 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein ) HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11 Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0
BLAST of Lcy04g002780 vs. TAIR 10
Match: AT1G21960.1 (RING/U-box superfamily protein ) HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10 Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0
BLAST of Lcy04g002780 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein ) HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10 Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0
BLAST of Lcy04g002780 vs. TAIR 10
Match: AT1G74620.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10 Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0
BLAST of Lcy04g002780 vs. TAIR 10
Match: AT3G14970.1 (RING/U-box superfamily protein ) HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10 Identity = 38/138 (27.54%), Postives = 63/138 (45.65%), Query Frame = 0
The following BLAST results are available for this feature:
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
Relationships
The following mRNA feature(s) are a part of this gene:
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
|