Lcy04g002780 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002780
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionE3 ubiquitin-protein ligase RING1-like
LocationChr04: 21637810 .. 21638532 (-)
RNA-Seq ExpressionLcy04g002780
SyntenyLcy04g002780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA

mRNA sequence

ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA

Coding sequence (CDS)

ATGGAGCATCTTCCTTGTCGACAATTTCTAACTAGTATGAGCGCTGAAGTTAAAGCTCACACTCTCAAACCCCAACAAGCTCCTCAAACCCCATCACCCATCGAAGAAATCAGCCTCAAATTCAGAGTCCAAATCAAATGTCGTCACTTTCTTGCAGCTGAAGACAACACTGTATCGGTAGTGAGACGACATAGATTTCGACAACTTCCCTTTGAAGTTCTCAATGTTCCTATCCGCGTCTTAAAGCCTGACGATGAGGCCTTGCAAAAGTTCCTAACAATGCAGTTTGAAACGTGCTATAGAGACAAAATTGACGTTAAGACGGTTGCAGATTTGATAAAAGACAAGTGGGTTGAAATTCAAGAAAAAGGGAATTGTTCTTCTTCGAGTATGTTTGGAAAAGTTTTGCCTCTTACAATTACTATAAAATTGTGGAATTTTGCGGTGTTTTTTGAGAGCCAATTATCGGCCATGACCGAAAGTGAATACGGAATGGTTCCTACGAACAGACGTGCGATGGAGGAGATGGTAAAGAGAGTGAAATGTGAGGATATTGAAGATGACCAAAGTTGCGTAATTTGCTTGGAGAAAATAGAGAGAGAAGGAAAGAGTGGAATATTGAAAATGCCTTGCTTGCATTTGTTTCATGAGATTTGTATCAACAAGTGGTTGAGGAAGAGTCATTATTGTCCCATTTGCAGATTTGAAATGCCTACAAACTAA

Protein sequence

MEHLPCRQFLTSMSAEVKAHTLKPQQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNTVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQKFLTMQFETCYRDKIDVKTVADLIKDKWVEIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN
Homology
BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q9CY62 (E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 8.7e-11
Identity = 35/103 (33.98%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 145 WNFAVFFESQLSAMTESEYGMV-------PTNRRAMEEMVKRVKCEDIEDDQSCVICLEK 204
           W++A    S  + M   + G+V       P   +A+ E + R      + D  C +CL  
Sbjct: 35  WSWAPGGRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVISSAKADLKCPVCL-- 94

Query: 205 IEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           +E E +  +++MPC HLFH  CI  WL K++ CP+CR E+PT+
Sbjct: 95  LEFEAEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 135

BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q6AXU4 (E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.3e-10
Identity = 34/103 (33.01%), Postives = 55/103 (53.40%), Query Frame = 0

Query: 145 WNFAVFFESQLSAMTESEYGMV-------PTNRRAMEEMVKRVKCEDIEDDQSCVICLEK 204
           W++A    S  + M   + G+V       P   +A+ E + R      + +  C +CL  
Sbjct: 35  WSWAPGSRSLFNRMDFEDLGLVDWEHHLPPPAAKAVVESLPRTVIRSSKAELKCPVCL-- 94

Query: 205 IEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           +E E +  +++MPC HLFH  CI  WL K++ CP+CR E+PT+
Sbjct: 95  LEFEEEETVIEMPCHHLFHSNCILPWLSKTNSCPLCRHELPTD 135

BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: E9QAU8 (E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 5.6e-10
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 170 RRAMEEMVKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHY 229
           RR  +   K+ + E+ + D+ C ICL  +E +G+  + ++PC+HLFH++C+++WL  S  
Sbjct: 274 RRPQDSKGKKDEGEESDTDEKCTICLSMLE-DGED-VRRLPCMHLFHQLCVDQWLAMSKK 333

Query: 230 CPICRFEMPT 240
           CPICR ++ T
Sbjct: 334 CPICRVDIET 341

BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q6ZSG1 (E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10
Identity = 27/70 (38.57%), Postives = 47/70 (67.14%), Query Frame = 0

Query: 170 RRAMEEMVKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHY 229
           RR  +   K+ + E+ + D+ C ICL  +E +G+  + ++PC+HLFH++C+++WL  S  
Sbjct: 273 RRPQDGKGKKDEGEESDTDEKCTICLSMLE-DGED-VRRLPCMHLFHQLCVDQWLAMSKK 332

Query: 230 CPICRFEMPT 240
           CPICR ++ T
Sbjct: 333 CPICRVDIET 340

BLAST of Lcy04g002780 vs. ExPASy Swiss-Prot
Match: Q8LPN7 (E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 9.6e-10
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 154 QLSAMTESEYGMVPTNRRAMEEM--VKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPC 213
           QL+    + YG  P ++ A++ +  VK  K     +   C +C++  E E  S + +MPC
Sbjct: 177 QLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMD--EFEDGSDVKQMPC 236

Query: 214 LHLFHEICINKWLRKSHYCPICRFEMPTN 241
            H+FH+ C+  WL   + CP+CRFE+PT+
Sbjct: 237 KHVFHQDCLLPWLELHNSCPVCRFELPTD 263

BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A6J1BQW1 (uncharacterized protein LOC111004784 OS=Momordica charantia OX=3673 GN=LOC111004784 PE=4 SV=1)

HSP 1 Score: 195.7 bits (496), Expect = 2.3e-46
Identity = 109/257 (42.41%), Postives = 159/257 (61.87%), Query Frame = 0

Query: 1   MEHLPCRQFLTSMSAEVKAHTLKPQQAPQT-PSPIEEISLKFRVQIKCRHFLAAEDN--- 60
           M++L   + +  M+ EV+  T KP+Q PQT P P+EEI LKF   ++C HFL + +N   
Sbjct: 1   MDYLFRHRSIVRMTVEVQPPTPKPEQPPQTQPDPVEEIRLKFVAVVECSHFLVSTNNNFR 60

Query: 61  TVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQKFLTMQFETCYRDKI-DVKTVADLIKD 120
           T ++ RRH   ++P  V  +PI++L    ++L +FL+ +F     D + ++ T+ D I  
Sbjct: 61  TTTLTRRHESEKVPLVVHQIPIQILDHGPQSLHQFLSSKFPAYQNDTVFNIHTITDKIIA 120

Query: 121 KWVEIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNRRAMEE 180
            W EI+++   + S   GKVLPLT+T++LWN  V   ++     E  + M+PT+  A+EE
Sbjct: 121 TWAEIKQQQEQNLSVFVGKVLPLTVTLRLWNVVV---TRHETPMEDRF-MIPTSDFAVEE 180

Query: 181 MVKRVKCEDIEDD----QSCVICLEKI----EREGKSGI----LKMPCLHLFHEICINKW 240
           M+KRVK E   DD    +SCVICLE I    E+E    +    L+MPCLH+FHE CI KW
Sbjct: 181 MLKRVKVEQQFDDDDQIRSCVICLEDISVNMEKEENGEVILLLLQMPCLHVFHEECIKKW 240

BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A6J1HDB7 (probable E3 ubiquitin-protein ligase ZFP1 OS=Cucurbita moschata OX=3662 GN=LOC111461780 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 4.3e-45
Identity = 105/241 (43.57%), Postives = 156/241 (64.73%), Query Frame = 0

Query: 1   MEHLPCRQFLTS-MSAEVKAHTLKPQQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNTVS 60
           MEHL   +  TS +S +V A     QQ P  P  +++ISLKFRV++KCRH   A +NTV 
Sbjct: 1   MEHLGTPRLTTSVLSVQVTASPPNLQQ-PLPPQTLQQISLKFRVEVKCRHIQVANNNTVI 60

Query: 61  VVRRHRFRQLPFEVLNVPIRVLKPDDE-ALQKFLTMQFETCYRDKIDVKTVADLIKDKWV 120
               HR+R+LPF +  +P+ V+  D+  ALQ  L++ F+  Y + +DVK VAD IK KW+
Sbjct: 61  SFTAHRYRRLPFPICQLPLAVIDRDNNPALQNCLSVHFDD-YSELVDVKKVADEIKRKWI 120

Query: 121 EIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNR-RAMEEMV 180
           EI+ + + ++   FG+V  LT+T+K+WN  +F+  ++      E G++  +R R +E M+
Sbjct: 121 EIRVREDLNA---FGRVFRLTVTLKVWNVGMFYNGRV------EDGVMSCDRSRGIEMML 180

Query: 181 KRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEM 239
            RV+ E+IE D  CVICLE++ER  KS ++ MPC H+FH  CI KWL  ++ CP+CRF+M
Sbjct: 181 MRVRFEEIESDDVCVICLEELERRKKS-LVGMPCFHVFHRNCIVKWLADTNSCPVCRFQM 229

BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A5A7SPE2 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold139G001670 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 8.1e-36
Identity = 88/222 (39.64%), Postives = 128/222 (57.66%), Query Frame = 0

Query: 34  IEEISLKFRVQIKCRHFLAAED---NTVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQK 93
           ++ I L F+VQ+KC HFL  ED    T S +  H  R  P     +PI + K  D+AL++
Sbjct: 45  VQHIDLNFKVQLKCSHFLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQ 104

Query: 94  FLTMQFETCYRDKIDVKTVADLIKDKWV--------EIQEKGNCSSSSMFGKVLPLTITI 153
           +L  +F   YR+ I++  VAD +   WV        E QE+ N    ++F K+ PL IT+
Sbjct: 105 YLFHKFHV-YREFINITLVADRLIQHWVKRVEEDDHEYQEENNNHDFNVFQKIYPLEITL 164

Query: 154 KLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKI---- 213
           ++     + E     +      MVPT+  A+E M++RV+ +  ++  +CVICLE+I    
Sbjct: 165 EMQIIQRYVEESPIMI------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKE 224

Query: 214 EREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           E E +  +L+MPCLH+FH  CINKWL+ SHYCP CRF MPTN
Sbjct: 225 EEETEKSVLQMPCLHMFHGECINKWLKTSHYCPTCRFSMPTN 259

BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A5D3C6D9 (Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G001660 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 88/222 (39.64%), Postives = 127/222 (57.21%), Query Frame = 0

Query: 34  IEEISLKFRVQIKCRHFLAAED---NTVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQK 93
           ++ I L F+VQ+KC HFL  ED    T S +  H  R  P     +PI + K  D+AL++
Sbjct: 45  VQHIDLNFKVQLKCSHFLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQ 104

Query: 94  FLTMQFETCYRDKIDVKTVADLIKDKWV--------EIQEKGNCSSSSMFGKVLPLTITI 153
           +L  +F   YR+ I+   VAD +   WV        E QE+ N    ++F K+ PL IT+
Sbjct: 105 YLFHKFHV-YREFINTTLVADRLIQHWVKRVEEDDHEHQEENNNHDFNVFQKIYPLEITL 164

Query: 154 KLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKI---- 213
           ++     + E     +      MVPT+  A+E M++RV+ +  ++  +CVICLE+I    
Sbjct: 165 EMRIIQRYVEESPIMI------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKE 224

Query: 214 EREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           E E +  +L+MPCLH+FH  CINKWL+ SHYCP CRF MPTN
Sbjct: 225 EEESEKSVLQMPCLHMFHGECINKWLKTSHYCPTCRFSMPTN 259

BLAST of Lcy04g002780 vs. ExPASy TrEMBL
Match: A0A0A0K7L0 (RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 2.3e-35
Identity = 87/229 (37.99%), Postives = 139/229 (60.70%), Query Frame = 0

Query: 28  PQTPSPIEEISLKFRVQIKCRHFLAAEDN-----TVSVVRRHRFRQLPFEVLNVPIRVLK 87
           P +P+ +++I L F+V++KC+H+  A +        +++  H     P   L +P+ + K
Sbjct: 40  PNSPTLVKQIDLNFKVEVKCQHYFQAGEGGNSTFATALLSEHISSHHPLPTLQLPVSIFK 99

Query: 88  PDDEALQKFLTMQFETCYRDKIDVKTVADLIKDKWVEIQEKGNCSSSSMFGKVLPLTITI 147
             D+ L++ L  +F+  YR  I+++ V D I   WV+  ++ N S+S +F ++ PL ITI
Sbjct: 100 HGDKTLKRLLFREFQ-IYRAIINIELVVDEIIKHWVKKVDEEN-STSQVFEEIYPLEITI 159

Query: 148 KLWNFAVFF---ESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDI---EDDQS--CVIC 207
           +L  + +     +     M + +  MVPT+  AME M+K+V+ E+I    D++S  CVIC
Sbjct: 160 ELLVYQMIHAIDQPHEIMMDQPQVMMVPTSESAMESMLKKVENEEIVKFGDNKSINCVIC 219

Query: 208 LEKIEREGKSG---ILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           LE+I +E K     +L+MPCLH+FHE CI KWL++SHYCP CRF MPTN
Sbjct: 220 LEEISKEKKGSEAVVLQMPCLHMFHEECIRKWLKRSHYCPTCRFSMPTN 266

BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_022131659.1 (uncharacterized protein LOC111004784 [Momordica charantia])

HSP 1 Score: 195.7 bits (496), Expect = 4.7e-46
Identity = 109/257 (42.41%), Postives = 159/257 (61.87%), Query Frame = 0

Query: 1   MEHLPCRQFLTSMSAEVKAHTLKPQQAPQT-PSPIEEISLKFRVQIKCRHFLAAEDN--- 60
           M++L   + +  M+ EV+  T KP+Q PQT P P+EEI LKF   ++C HFL + +N   
Sbjct: 1   MDYLFRHRSIVRMTVEVQPPTPKPEQPPQTQPDPVEEIRLKFVAVVECSHFLVSTNNNFR 60

Query: 61  TVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQKFLTMQFETCYRDKI-DVKTVADLIKD 120
           T ++ RRH   ++P  V  +PI++L    ++L +FL+ +F     D + ++ T+ D I  
Sbjct: 61  TTTLTRRHESEKVPLVVHQIPIQILDHGPQSLHQFLSSKFPAYQNDTVFNIHTITDKIIA 120

Query: 121 KWVEIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNRRAMEE 180
            W EI+++   + S   GKVLPLT+T++LWN  V   ++     E  + M+PT+  A+EE
Sbjct: 121 TWAEIKQQQEQNLSVFVGKVLPLTVTLRLWNVVV---TRHETPMEDRF-MIPTSDFAVEE 180

Query: 181 MVKRVKCEDIEDD----QSCVICLEKI----EREGKSGI----LKMPCLHLFHEICINKW 240
           M+KRVK E   DD    +SCVICLE I    E+E    +    L+MPCLH+FHE CI KW
Sbjct: 181 MLKRVKVEQQFDDDDQIRSCVICLEDISVNMEKEENGEVILLLLQMPCLHVFHEECIKKW 240

BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_022961194.1 (probable E3 ubiquitin-protein ligase ZFP1 [Cucurbita moschata])

HSP 1 Score: 191.4 bits (485), Expect = 8.8e-45
Identity = 105/241 (43.57%), Postives = 156/241 (64.73%), Query Frame = 0

Query: 1   MEHLPCRQFLTS-MSAEVKAHTLKPQQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNTVS 60
           MEHL   +  TS +S +V A     QQ P  P  +++ISLKFRV++KCRH   A +NTV 
Sbjct: 1   MEHLGTPRLTTSVLSVQVTASPPNLQQ-PLPPQTLQQISLKFRVEVKCRHIQVANNNTVI 60

Query: 61  VVRRHRFRQLPFEVLNVPIRVLKPDDE-ALQKFLTMQFETCYRDKIDVKTVADLIKDKWV 120
               HR+R+LPF +  +P+ V+  D+  ALQ  L++ F+  Y + +DVK VAD IK KW+
Sbjct: 61  SFTAHRYRRLPFPICQLPLAVIDRDNNPALQNCLSVHFDD-YSELVDVKKVADEIKRKWI 120

Query: 121 EIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNR-RAMEEMV 180
           EI+ + + ++   FG+V  LT+T+K+WN  +F+  ++      E G++  +R R +E M+
Sbjct: 121 EIRVREDLNA---FGRVFRLTVTLKVWNVGMFYNGRV------EDGVMSCDRSRGIEMML 180

Query: 181 KRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEM 239
            RV+ E+IE D  CVICLE++ER  KS ++ MPC H+FH  CI KWL  ++ CP+CRF+M
Sbjct: 181 MRVRFEEIESDDVCVICLEELERRKKS-LVGMPCFHVFHRNCIVKWLADTNSCPVCRFQM 229

BLAST of Lcy04g002780 vs. NCBI nr
Match: XP_023516070.1 (E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 176.4 bits (446), Expect = 2.9e-40
Identity = 99/239 (41.42%), Postives = 152/239 (63.60%), Query Frame = 0

Query: 1   MEHLPCRQFLTS-MSAEVKAHTLKPQQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNTVS 60
           MEHL   +  TS +S +V+A     QQ P  P  +++ISLKFRV++KCRH   A +NTV 
Sbjct: 1   MEHLGTPRLTTSILSVQVRASPPDLQQ-PLPPQTLQQISLKFRVEVKCRHIQVANNNTVI 60

Query: 61  VVRRHRFRQLPFEVLNVPIRVLKPDD-EALQKFLTMQFETCYRDKIDVKTVADLIKDKWV 120
               HR+R+LPF + ++P+ +++ D   ALQ  L++ F   Y + +D   VAD I  KW+
Sbjct: 61  SFTAHRYRRLPFPICHLPLALVERDHIPALQNRLSVHFAD-YSELVDPTKVADEIIRKWI 120

Query: 121 EIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVK 180
           EI+E+ + ++   FG+V  LT+T+K+WN  +F++ ++    E E  M     R +E ++ 
Sbjct: 121 EIREREDLNA---FGRVFRLTVTLKVWNVGMFYDRRV----EDEV-MSCDRSRGIEMILM 180

Query: 181 RVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEM 238
           RV+ E+IE D  CVICLE+++R  KS ++ MPC H+FH  CI KWL  ++ CP+CRF+M
Sbjct: 181 RVRFEEIESDDVCVICLEELKRRKKS-LVGMPCFHVFHRNCIVKWLADTNSCPVCRFQM 228

BLAST of Lcy04g002780 vs. NCBI nr
Match: KAE8645828.1 (hypothetical protein Csa_017274 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 9.8e-36
Identity = 86/229 (37.55%), Postives = 134/229 (58.52%), Query Frame = 0

Query: 25  QQAPQTPSPIEEISLKFRVQIKCRHFLAAEDNT---VSVVRRHRFRQLPFEVLNVPIRVL 84
           Q    +P+ +++I L F+V++KC+HF A E++T    + +  H     PF  L +P+ + 
Sbjct: 292 QTRSNSPTSVKQIDLNFKVEVKCQHFQAGEEDTTFATTFLSEHIIAHQPFPALQLPVSIF 351

Query: 85  KPDDEALQKFLTMQFETCYRDKIDVKTVADLIKDKWVEIQEKGNCSSSSMFGKVLPLTIT 144
           K  D+ L++ L  +F+  +R  I+++ V D I   WV+  E    ++S +F ++ PL IT
Sbjct: 352 KHGDKTLKRLLFQKFQ-MFRAIINIELVTDQIIKHWVKKVEDDKENNSGVFEEIYPLEIT 411

Query: 145 IKLWNFAVF--FESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDI-----EDDQSCVIC 204
           I++    +    +     + + +  MVPT+  AM+ M+KRV+ E+I         SCVIC
Sbjct: 412 IEVLVLQMIDAVDQPQETIDQPQVRMVPTSDSAMKSMLKRVENEEIMKVGDYKSISCVIC 471

Query: 205 LEKIEREGKSG---ILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           LEKI +E K     +L+MPCLH+FHE CI KWL+ SHYCP CRF MP N
Sbjct: 472 LEKISKEEKGSEGVVLQMPCLHMFHEECIRKWLKTSHYCPTCRFSMPIN 519

BLAST of Lcy04g002780 vs. NCBI nr
Match: KAA0031411.1 (putative zinc finger protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 1.7e-35
Identity = 88/222 (39.64%), Postives = 128/222 (57.66%), Query Frame = 0

Query: 34  IEEISLKFRVQIKCRHFLAAED---NTVSVVRRHRFRQLPFEVLNVPIRVLKPDDEALQK 93
           ++ I L F+VQ+KC HFL  ED    T S +  H  R  P     +PI + K  D+AL++
Sbjct: 45  VQHIDLNFKVQLKCSHFLVYEDGITTTTSFLNEHTSRPHPLATYKLPISIFKHGDKALEQ 104

Query: 94  FLTMQFETCYRDKIDVKTVADLIKDKWV--------EIQEKGNCSSSSMFGKVLPLTITI 153
           +L  +F   YR+ I++  VAD +   WV        E QE+ N    ++F K+ PL IT+
Sbjct: 105 YLFHKFHV-YREFINITLVADRLIQHWVKRVEEDDHEYQEENNNHDFNVFQKIYPLEITL 164

Query: 154 KLWNFAVFFESQLSAMTESEYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKI---- 213
           ++     + E     +      MVPT+  A+E M++RV+ +  ++  +CVICLE+I    
Sbjct: 165 EMQIIQRYVEESPIMI------MVPTSDSAIESMLRRVENDWDDEGINCVICLEEISSKE 224

Query: 214 EREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMPTN 241
           E E +  +L+MPCLH+FH  CINKWL+ SHYCP CRF MPTN
Sbjct: 225 EEETEKSVLQMPCLHMFHGECINKWLKTSHYCPTCRFSMPTN 259

BLAST of Lcy04g002780 vs. TAIR 10
Match: AT3G19950.1 (RING/U-box superfamily protein )

HSP 1 Score: 65.5 bits (158), Expect = 6.8e-11
Identity = 31/89 (34.83%), Postives = 51/89 (57.30%), Query Frame = 0

Query: 154 QLSAMTESEYGMVPTNRRAMEEM--VKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPC 213
           QL+    + YG  P ++ A++ +  VK  K     +   C +C++  E E  S + +MPC
Sbjct: 177 QLAENDPNRYGTPPASKSAIDALPTVKVTKDMLKSEMNQCAVCMD--EFEDGSDVKQMPC 236

Query: 214 LHLFHEICINKWLRKSHYCPICRFEMPTN 241
            H+FH+ C+  WL   + CP+CRFE+PT+
Sbjct: 237 KHVFHQDCLLPWLELHNSCPVCRFELPTD 263

BLAST of Lcy04g002780 vs. TAIR 10
Match: AT1G21960.1 (RING/U-box superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 28/75 (37.33%), Postives = 43/75 (57.33%), Query Frame = 0

Query: 167 PTNRRAMEEMVKRV---KCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKW 226
           P N+  ++ + ++V   K +   D   C ICLE+ E+     ++ +PC H F + CI KW
Sbjct: 131 PANKLVVDRLARKVYNKKKKSNSDASVCTICLEEFEK--GEIVVTLPCGHEFDDGCIGKW 190

Query: 227 LRKSHYCPICRFEMP 239
             K H CP+CRFE+P
Sbjct: 191 FLKDHVCPLCRFELP 203

BLAST of Lcy04g002780 vs. TAIR 10
Match: AT5G59550.1 (zinc finger (C3HC4-type RING finger) family protein )

HSP 1 Score: 62.4 bits (150), Expect = 5.8e-10
Identity = 33/88 (37.50%), Postives = 50/88 (56.82%), Query Frame = 0

Query: 154 QLSAMTESEYGMVPTNRRAMEEMVKRVKCED--IEDDQSCVICLEKIEREGKSGILKMPC 213
           + SA      G  P ++ A+E +  RV+  D  I  + +C +C E  E E ++   +MPC
Sbjct: 161 EASATGIGRSGNPPASKSAIESL-PRVEISDCHIGSEANCAVCTEIFETETEA--REMPC 220

Query: 214 LHLFHEICINKWLRKSHYCPICRFEMPT 240
            HLFH+ CI  WL   + CP+CRFE+P+
Sbjct: 221 KHLFHDDCIVPWLSIRNSCPVCRFELPS 245

BLAST of Lcy04g002780 vs. TAIR 10
Match: AT1G74620.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10
Identity = 25/52 (48.08%), Postives = 34/52 (65.38%), Query Frame = 0

Query: 187 DDQSCVICLEKIEREGKSGILKMPCLHLFHEICINKWLRKSHYCPICRFEMP 239
           ++  C IC+E    EG S + K+PC H FH  CINKWL+ +H CP+CR  +P
Sbjct: 179 EENGCAICMEDY-IEGSSIVAKLPCDHEFHGDCINKWLQLNHMCPLCRSSIP 229

BLAST of Lcy04g002780 vs. TAIR 10
Match: AT3G14970.1 (RING/U-box superfamily protein )

HSP 1 Score: 61.6 bits (148), Expect = 9.8e-10
Identity = 38/138 (27.54%), Postives = 63/138 (45.65%), Query Frame = 0

Query: 102 DKIDVKTVADLIKDKWVEIQEKGNCSSSSMFGKVLPLTITIKLWNFAVFFESQLSAMTES 161
           D I      D++ +    I +   C   S   K + + I + +W F    +  +    + 
Sbjct: 91  DLIKAPRYIDVVTELIDAILDLKKCDKISNV-KEVDVVINVIVWRFPDDDDDDV----DV 150

Query: 162 EYGMVPTNRRAMEEMVKRVKCEDIEDDQSCVICLEKIEREGKSGILKMPCLHLFHEICIN 221
              + P +  A+E+ ++ V    +E++  CVIC++KI         +MPC H+FH  C  
Sbjct: 151 RLAVAPASNEAVEQHLETVV---VENESWCVICMDKIRIGLDVAAGRMPCSHVFHRTCGE 210

Query: 222 KWLRKSHYCPICRFEMPT 240
            WLR S  CP+CR   PT
Sbjct: 211 DWLRCSGICPVCRAMFPT 220

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9CY628.7e-1133.98E3 ubiquitin-protein ligase RNF181 OS=Mus musculus OX=10090 GN=Rnf181 PE=1 SV=1[more]
Q6AXU44.3e-1033.01E3 ubiquitin-protein ligase RNF181 OS=Rattus norvegicus OX=10116 GN=Rnf181 PE=1 ... [more]
E9QAU85.6e-1038.57E3 ubiquitin-protein ligase RNF165 OS=Mus musculus OX=10090 GN=Rnf165 PE=1 SV=1[more]
Q6ZSG19.6e-1038.57E3 ubiquitin-protein ligase RNF165 OS=Homo sapiens OX=9606 GN=RNF165 PE=1 SV=1[more]
Q8LPN79.6e-1034.83E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19... [more]
Match NameE-valueIdentityDescription
A0A6J1BQW12.3e-4642.41uncharacterized protein LOC111004784 OS=Momordica charantia OX=3673 GN=LOC111004... [more]
A0A6J1HDB74.3e-4543.57probable E3 ubiquitin-protein ligase ZFP1 OS=Cucurbita moschata OX=3662 GN=LOC11... [more]
A0A5A7SPE28.1e-3639.64Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sca... [more]
A0A5D3C6D92.3e-3539.64Putative zinc finger protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sca... [more]
A0A0A0K7L02.3e-3537.99RING-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G067560 P... [more]
Match NameE-valueIdentityDescription
XP_022131659.14.7e-4642.41uncharacterized protein LOC111004784 [Momordica charantia][more]
XP_022961194.18.8e-4543.57probable E3 ubiquitin-protein ligase ZFP1 [Cucurbita moschata][more]
XP_023516070.12.9e-4041.42E3 ubiquitin-protein ligase RNF165-like [Cucurbita pepo subsp. pepo][more]
KAE8645828.19.8e-3637.55hypothetical protein Csa_017274 [Cucumis sativus][more]
KAA0031411.11.7e-3539.64putative zinc finger protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT3G19950.16.8e-1134.83RING/U-box superfamily protein [more]
AT1G21960.15.8e-1037.33RING/U-box superfamily protein [more]
AT5G59550.15.8e-1037.50zinc finger (C3HC4-type RING finger) family protein [more]
AT1G74620.19.8e-1048.08RING/U-box superfamily protein [more]
AT3G14970.19.8e-1027.54RING/U-box superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 191..233
e-value: 2.8E-7
score: 40.2
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 190..234
e-value: 1.5E-11
score: 44.5
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 191..234
score: 12.725326
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 190..234
e-value: 0.0033
score: 11.3
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10Zinc/RING finger domain, C3HC4 (zinc finger)coord: 153..240
e-value: 1.5E-17
score: 65.0
NoneNo IPR availablePANTHERPTHR15710:SF59E3 UBIQUITIN-PROTEIN LIGASE SDIR1-LIKEcoord: 45..239
NoneNo IPR availablePANTHERPTHR15710E3 UBIQUITIN-PROTEIN LIGASE PRAJAcoord: 45..239
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 179..238

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002780.1Lcy04g002780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0008270 zinc ion binding