Lcy04g002460 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002460
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 17690734 .. 17691081 (-)
RNA-Seq ExpressionLcy04g002460
SyntenyLcy04g002460
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTTCGCAACGTCGTTCTTTCCTTTTCATCTCCTTCCTCGTCCTTACCATGTGTTTTCCTTTCACACTCACGGCAACTTCTAGAGTCATCCTCGCTTCAGTACCCAATCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACCAATGAGGCTCCAAGTTCTAATGATTTCAACAATTTAAAAGTTTCGGAGATAGCAAGCACAAGTCCTCAAATAGACCACTCAGCCATTTTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

mRNA sequence

ATGACTTCGCAACGTCGTTCTTTCCTTTTCATCTCCTTCCTCGTCCTTACCATGTGTTTTCCTTTCACACTCACGGCAACTTCTAGAGTCATCCTCGCTTCAGTACCCAATCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACCAATGAGGCTCCAAGTTCTAATGATTTCAACAATTTAAAAGTTTCGGAGATAGCAAGCACAAGTCCTCAAATAGACCACTCAGCCATTTTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

Coding sequence (CDS)

ATGACTTCGCAACGTCGTTCTTTCCTTTTCATCTCCTTCCTCGTCCTTACCATGTGTTTTCCTTTCACACTCACGGCAACTTCTAGAGTCATCCTCGCTTCAGTACCCAATCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACCAATGAGGCTCCAAGTTCTAATGATTTCAACAATTTAAAAGTTTCGGAGATAGCAAGCACAAGTCCTCAAATAGACCACTCAGCCATTTTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTCTGCTCCCAATCCAATCCATAATAATAATGTGCCCATGTGCTAA

Protein sequence

MTSQRRSFLFISFLVLTMCFPFTLTATSRVILASVPNRKVLKATTPANATPFNELSSQQVTNEAPSSNDFNNLKVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNNNVPMC
Homology
BLAST of Lcy04g002460 vs. ExPASy TrEMBL
Match: A0A0A0L2F6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-06
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 1   MTSQRRSFLFI-SFLVLTMCFPFTLTATSRVILASVPNRKVLKATTPANATPFNELSSQQ 60
           MT +   FLFI  F +  M  P TL ATSR IL   P       T   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPSSNDFNNLKVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   P+S   N+LK+S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

BLAST of Lcy04g002460 vs. ExPASy TrEMBL
Match: A0A5A7V1K1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1073G00050 PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 3.9e-04
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 18  MCFPFTLTATSRVILASVPNRKVLKATTPAN-ATP-FNELSSQQV-TNEAPSSNDFNNLK 77
           M  P TL ATSR       N   L+ TT  N A P F + SS+ + T   P+S   N+LK
Sbjct: 1   MSSPTTLMATSR-------NTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLK 60

Query: 78  VS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           +S    E  ST+    HS + SCKPKGP+RWS+P+P+ NN
Sbjct: 61  LSKGKQEQTSTA---THSTLHSCKPKGPVRWSSPSPLRNN 90

BLAST of Lcy04g002460 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 63.2 bits (152), Expect = 1.7e-06
Identity = 39/105 (37.14%), Postives = 56/105 (53.33%), Query Frame = 0

Query: 11  ISFLVLTMCFPFTLTATSRVILASVPNRKVLKATTPANATPFNELSSQQVTNEAPSSNDF 70
           I FL++ +  P T+ ATSR +L                A    E   Q   ++ P+SNDF
Sbjct: 12  IFFLLIVISSPSTIIATSRHML----------------ALDTKESPPQPPMDKPPTSNDF 71

Query: 71  NNLKVSEIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNNNVPMC 116
           + L +       P +  SA+ SCKPKGP+RWS+P+PI  NN+P+C
Sbjct: 72  DTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPI-RNNLPIC 99

BLAST of Lcy04g002460 vs. NCBI nr
Match: KGN54792.1 (hypothetical protein Csa_012277 [Cucumis sativus])

HSP 1 Score: 59.7 bits (143), Expect = 1.9e-05
Identity = 50/116 (43.10%), Postives = 63/116 (54.31%), Query Frame = 0

Query: 1   MTSQRRSFLFI-SFLVLTMCFPFTLTATSRVILASVPNRKVLKATTPANATPFNELSSQQ 60
           MT +   FLFI  F +  M  P TL ATSR IL   P       T   +A  F + SS+ 
Sbjct: 1   MTPRCFPFLFIYLFFLFIMSSPTTLMATSRNILPLEP------TTLTNDALSFVQRSSRH 60

Query: 61  V-TNEAPSSNDFNNLKVS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           + T   P+S   N+LK+S    E  ST     HS + SCKPKGPIRWS+P+P+ NN
Sbjct: 61  LATTTTPTSRRSNSLKLSKGRHEQTSTK---THSTLQSCKPKGPIRWSSPSPLRNN 107

BLAST of Lcy04g002460 vs. NCBI nr
Match: KAA0060707.1 (hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK21843.1 hypothetical protein E5676_scaffold1073G00050 [Cucumis melo var. makuwa])

HSP 1 Score: 54.3 bits (129), Expect = 8.1e-04
Identity = 44/100 (44.00%), Postives = 57/100 (57.00%), Query Frame = 0

Query: 18  MCFPFTLTATSRVILASVPNRKVLKATTPAN-ATP-FNELSSQQV-TNEAPSSNDFNNLK 77
           M  P TL ATSR       N   L+ TT  N A P F + SS+ + T   P+S   N+LK
Sbjct: 1   MSSPTTLMATSR-------NTLPLEPTTLTNDALPAFIQRSSRHLATTTTPTSRPSNSLK 60

Query: 78  VS----EIASTSPQIDHSAILSCKPKGPIRWSAPNPIHNN 111
           +S    E  ST+    HS + SCKPKGP+RWS+P+P+ NN
Sbjct: 61  LSKGKQEQTSTA---THSTLHSCKPKGPVRWSSPSPLRNN 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0L2F69.3e-0643.10Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G499295 PE=4 SV=1[more]
A0A5A7V1K13.9e-0444.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
KAG6595583.11.7e-0637.14hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN54792.11.9e-0543.10hypothetical protein Csa_012277 [Cucumis sativus][more]
KAA0060707.18.1e-0444.00hypothetical protein E6C27_scaffold496G00110 [Cucumis melo var. makuwa] >TYK2184... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002460.1Lcy04g002460.1mRNA