Lcy04g002440 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g002440
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr04: 17439746 .. 17440042 (-)
RNA-Seq ExpressionLcy04g002440
SyntenyLcy04g002440
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTGTTTTCCTTTCACACTCACGACAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTTTGCTCCCAATTCAATCCATAATAATAATGTGCCCATGTGCTAA

mRNA sequence

ATGTGTTTTCCTTTCACACTCACGACAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTTTGCTCCCAATTCAATCCATAATAATAATGTGCCCATGTGCTAA

Coding sequence (CDS)

ATGTGTTTTCCTTTCACACTCACGACAACTTCTAGAGTCATCCTCGCTTCAGTACCCAACCGGAAAGTTTTAAAAGCAACAACACCTGCTAATGCAACACCATTCAATGAATTATCATCTCAACAGGTAACTAATGAGGCTCCAAGTTCTAATGATTTCAACACTTTAAAAGTTTCGGAGATAGCAAGCACGAGTCCACAAATAGACCACTCAGCCATTCTAAGTTGCAAGCCTAAAGGTCCAATTAGATGGTTTGCTCCCAATTCAATCCATAATAATAATGTGCCCATGTGCTAA

Protein sequence

MCFPFTLTTTSRVILASVPNRKVLKATTPANATPFNELSSQQVTNEAPSSNDFNTLKVSEIASTSPQIDHSAILSCKPKGPIRWFAPNSIHNNNVPMC
Homology
[Close]
BLAST of Lcy04g002440 vs. NCBI nr
Match: KAG6595583.1 (hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-05
Identity = 27/62 (43.55%), Postives = 39/62 (62.90%), Query Frame = 0 

Query: 37 ELSSQQVTNEAPSSNDFNTLKVSEIASTSPQIDHSAILSCKPKGPIRWFAPNSIHNNNVP 96
          E   Q   ++ P+SNDF+TL +       P +  SA+ SCKPKGP+RW +P+ I  NN+P
Sbjct: 39 ESPPQPPMDKPPTSNDFDTLSLPNGTKAMPPMPESAVRSCKPKGPVRWSSPSPI-RNNLP 98

Query: 97 MC 99
          +C
Sbjct: 99 IC 99

The following BLAST results are available for this feature:
BLAST of Lcy04g002440 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002440 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy04g002440 vs. NCBI nr
Match NameE-valueIdentityDescription
KAG6595583.13.6e-0543.55hypothetical protein SDJN03_12136, partial [Cucurbita argyrosperma subsp. sorori... [more]
BLAST of Lcy04g002440 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g002440.1Lcy04g002440.1mRNA