Lcy04g001760 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g001760
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein UXT homolog
Location	Chr04: 9991789 .. 9997882 (+)
RNA-Seq Expression	Lcy04g001760
Synteny	Lcy04g001760

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCCCTCTTCTTCCTTCTCTCTCCTCTCTCACGATTCGCACTCAGCGACCCCCTCTGCATTTCTTCCCCCTCGCCGGCAGTTTCCTCCTCACGGCGACAGCGTCGACGAAGGTGACCTCGACGCAGCGGCAACTCCAACAAGCACGTTCGCTCGTTCTACGGCTTGAAGCATCGCACGACGCGAGCCGCCGGGGTCTTCCCCCTCCGCGCAATAGCAACTTGAGACGGGATTCCGACTTTTCATTCCGTGCAACGCACCTCCGACTCGAGTAGCACACAGAATCCGGCAGCATCTTCGAGAAACGGCGACGTTCTTTCCACACAACCACCGGCTCGACACAGCACAAGGCAGGGGGTAGAAGTTTTGCCGCTTAGTTGTTGATAACTATTCTAGAAGTCACAATCAGTTGGATTGATCATGGATGTAGGAATTGACAACCTTCGACATGAGAAAGTTCAAAGGTTTGAGGAGTTTGTAGACCGTCGCTTGAAACCTGATTTGATTCATGCTATCGCTGAAAGGTATTCATGATGTCTTTTAGTTTCTCAACTTCGTGCATTTTGAAGGATCATAATGAAGCCTAGTTAATCAAGCAAGGTTTATTTTGTTCACCTGTCTAAATTGATATTTCAACTTAAATAGATAATGTATTGCTTAAAAAAGATTTTCTTTCATTGCCTTCCATGGGATTTCATTAAATATCATTGTGCCCTAAAATTTGATTGTTCAATTTTGGTAATTAATTCAAAAGTTAATATAAGTGGTGATGATTGGTGTCTAATGACCCTAATCACATTGAACGGTGGCTTCTTTCGAAGGAATCTTGGATGACCATGATAGGTCCTTGCTGATTAATTTTATTGTAGTAAGAGGATGGTACAGGAGAGGAATGATGGATGAGGAATCTTGTAAGTCAGGCCCATACAGTATTTGTAATGTCAGTGAAGAGTGGATACCTGTTTTTTGTTTATAGCTCTAGCTTATGGAAATATCTTTTCTATTAGAATTGCCGTGCACTTTGGGAGGGACGGGATCTCTTAAATTCTCCTTTGCCAGTACTTCTCTCATATCACTAAGAATTGATTTCTATGCGTCCATAGGATTTATTTTTGTTTCTTGCCTTGGGCTTTGGGAGAGATGTGAGCTCTCCGAATTCTCCTTTGACTAGTACTGCTTGGATATCATTGATTGGTTTTTATAAGTTCATAGTGTTGACTTTTGATTCTTGTGTTTGTTTTGTTGGTAGATAGCACACATCTTTAGAATTGGAGATGCCATCTAAGCAATGTTATTAAGGCTTCTGTCTTGAGTGTCACCTTAAGGCAAGGCTGCAATTTTGGTCTAGAGACTTGTGTTGTCTTCTTTGGACCATAAGAGGGTTACACTTTTCATAGGAAAGGCATATAAAAATGCACTGAGGCTTAAAGTCTCTATGACTCATATAATGAGTCGAAGAATAGTATTAATTTGCCCCATTCTTTAAAAATATAAAGGTTCGAGTTGTAACAATTTGAACTATTACTACTTTTATCACTTAGGCTTTAAAAACATTGAAGACAAGAATTTATACAATAAGTCAATTCTATTAATGGTAATAGTATGTGAGATATCATCTTATTGATATATTTATATATACATATATACACACACACATATATATATATATATATATATATATTATATGTATATATATATATATACATATATATATATAATAAACAACAATTTCATTGATGTATGAAATTTACAAAAGGGATACTGATAGAATCTGGATATTCACTTTATTGATTAGGGTAAAAATACAAGCCAAGAGGAGAATTCGAGAGCTCCCCTATCTCTCCCGATATTAGACTCAAGTCAGTTACTACTCAAAAGCTACCCCAATCAATTACATTCCAACTTATATAATTCTATTCTATTTACAATATTATAGTGGTCCCCACACATAGCCACCCTAACAAATTTACTCGCTCCTTTCCTTCCTAACTCTCTTCCTCTTGTAAACATACTTAATAGGGGGTCTATCACTACCTGGCCCCCAAAGTTCCACCTTGTCCTCAATGTGAAAATTCGGAAATTGAGTCGCTAACTGAACAACATCCTCGCAAGTTGCTTCGAACACATTAGATTTTGCCCAACGAATTAAGACTTCCAACTTAGAAGCATCATCAGCAGATTGGCGTAATCCCAACAGCTCCACAGGCACCACTTTAATCAACATATCCGGAGAAACATTAGATGGAAAAAGGACCACTGGAAATGAATTTCCTAGAGCTTTTCGTAGCTGAGATACGTGAAACACAGGGTGAAATTGCACATTTTCTGGCAATTTCAATTGATATGCCACCGCTCCGATTCGAGCTTCAAGCTGAAAAAGACCCATAGACCTTGGAGCTAATTTAGCATTCAAAGGTTTAGATAGTGTACCCTATCTATATGGCTTTAACTTTAGATAAGCCCAATCTCCCTCAGCAAACTCTACCTCTCCGCATTTTTCATTAGCCATTCTAGCCATATATTGTTGAGCATCCAACAAACGTTCACAAATTAATGCTAACATTCTATCTCGCTCCTTCAGCTGTTGATCAACCTCAGACACAGGTGATCCAGTCGACTGGTAAGCTAAAATAGAAGGAGGTGGATGACCATACACCATTTCAAAAGGTGATGTAACTATATTCAGTCCGCGACAACCAATGCACCCATTTAAAAGGACAGTGCATAGTAAAGCATCATAAATGTCTCCATACCTCGGTTTACTACTTCAGTTTGACCGTCTGTTTAGGGGTGATAAGTCGTACCTCGCTTAAGATGAGTGCCTTGACATCGAAACAACTCCTCCCAAAAGAGACTGTAAAAACAGGATCTCGATCAGAAACGATGCTGCGAGGAATACCATGTAAGCGCACTATTTCTTTAATAAAGATTTGTGCTTTCTCTGGAGCAGTGAAGGGGTGTTTGATTGGAACAAAACAAGCATACTTGAAAGTCTATCCCAATCACAAACTGCTCTGATACCAAATTGATAGAATCTAGATATTCACTTTATTGATTAGGGTAAAAGTACAAGCCAAGAGCATTCGAGAGTTCCCTTATCTCTCCCGATACTAGACTCAAGTCAATTACTAGTCAAAAGCTACCCCAATTAATTACATTTCAGCTTATATAGTTTTATTCTATTTACAATACTATAGTAGTCTCCACATATAACCACCCTAACAGATTTTACCCGCTCCTTTCCTTCCTAACTCTCTTCCTCTTGTAAACATACTTAATAGGGGGTCTAAAGATACAAGATCCATGGAGATTACAAAAGGCTTTTCCAACTATTAATGAGGGAAGCATATGAATATGATGCAAGTATAGGAGAGAGTTTACACCAATGACAATGTCGAAAAAAGCTTCAAAAGAGAGCTATTCCCTGGAAAACTCTTTTGTTTCTTTCTTTCCACAAAATCCAAAAGAAAGCTCTAGTGATGTTCATCCATAGGAGGGCTTTGATTTTCTTGAAGGGATGGCCCAACATGACAAATGCTAGTAGATCCCCCATGCGACAAGGGGTGACAAAGAACCATCCAAATGGATTTGAAATTTTGTTCCAAAATTTCCACGCAAAAGGACATAAAGCAAAGATATTGAATAATGACGGGTGGCCTATATAGTGGTGATGTTAAAGATATACTTTTAGAATTTTTGTTCAAGTGGCAATTCAAGGGGGTGATTTTTTATATACTTTTATATAAGTATTATGTTTAGAATAGTTGTTCACACAAATTTAGAATTCTCATAATGTTTTTAATTGAAATTGAGGCTTATGTCTCATATTGCCTCGAGACTTGATGAGATTTAATTTTGATTCAAGTTAAATTTTAAGTGGTAAAATTTGTTATAAAAAATATTTAATTGGTACAGTTGAAATGCAAGATTAAAGTATAATGGTAAAAATGATTTTTCTCACAGTTTTCTGTTTGTTCGCCATACCTTGAATTAATTCCCTGCAGACAAACAATGTCTAAGATTATTTATTTATTTAATTTTGGATTTTTATAGGGTTTTGGGGAAGAGGAAAGGAAGAAACAAGAGTGAATTTTTGTTGAAAACTTGAGAGATGTAACATTCATTTAACTGCTTTTTCTATTTTGTTTGTTGTTTGGCAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTGTATCCTTTTAACTCATTTGATGTCTCCTTAGATTTTTGGCTGCACTCCATTCTTAGTGATCCCGTCATACTTCTTTTTCTTGAGTTTTGCTGCATTGTTAATGGTATTTTTTATGATGTTAACACTTGACATTTTTCTACCATTAGTTCAGACCTTCGTCGAAACATTGAGAATTTAGAGAAAAATAGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGACGTGTAAGTTTCTCTTACCTTTCGGATAGGTTCCAGATAATGAAATTGTCCGTCTTTTTCTTGTTTTCATTTTTATTTCATTTGTGAGTGTTTGGGTTAACTTTGGTGCATCTCAACTATGCTCCACATCATGGTTATTGTTTTGTGTGAACTATATTTATAGAGTAGCTGAGCATTTCCCTTTAGATCAATATGGCTTGATGTAGTCTCTTCATCCTCCAACATGGTTTGGGCATTTCACATTCTTTTGTATGAACTTGATTTACCCTTGTGCAAATTTAGTAGATTGTCTTTTGTACAGGCCAGATACACGAAGCATATTTGTAGATGTTGGGCTTGGGTTTCATGTGGAGTTCACATGGTCTGAAGCTTTAAAATTCATTTCTCTTAAAGAAGAAAGGTTAGCCAGGTAAATGTTTTTAAAATTGCTTGTACTGTTTAGACTAGTGCCTGAACACGTGTAATTATTAGGATTTTCTGCTCTTTTAAAGCTTCAAAAGTTTGTTTGTTTAGGAGCCTGTAAATGTTATTTTTGGGCCATTGCATCTAAATTTAGTATTGTTTGTTGTAACCACGCAGACAGATAGAAGACTACACTCATTTAATTGCGTCAATAAAAGCGCAGATCAAGTTGGTATGCTTCGTAATTACCTTCCTCTGTTATCTCTGTTTGTTAAGTACGTGATAAGATACCAACTAACACGGAACAAACGCGAGTAAACTAGGAACAAAAGTAAGCAGAGAATAAGAGGAAACGATACTTGAAATATATTAAGTAGGGCAACAGTACACCAAAACAACCACCAATTCGAGAAGGTGGGGGATCTCCAGACACTATCAAGAAAGACAGGACTCAAAACAGGATTACATAAAGCATGCCCTTAACCTAGCCCAAAACCACTATTTATACAGCCAAAACCCACTACACTGCCATTCACACACCGACTTATATTAACTGCCCTTAATCAGAAGATGAATTTCCATCCCTACCCCTCCTCCTGTACGTATTCACAATCGGGGGCTTAACAGTACGATATATATATTTTTTCTCCTTTCGTTTATTCGACTCATCCACGTAAGTTCACAGGTGAAAGTTGAAATTTTCCCTTAAAAAAAGTTTCTGCTAATATACATATAGTTTTTTATACTTTTATCCATTAATCAAATTTAATTCTTCTGGGATCCTAAAACTTTCATTTGTTTTTGTTCTTCGTCTGTAAGACAAGTGGGGTAGGTGAGACTGAGAGGTATTTGAACATTTGATTTGCAGGTTTGTGAAGGCATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTGGAAGGACGTGCATTTTAAGTTCCGTTCCTCATAGTTGCTTCTTTCCTGGGAATGAAGATGGTCCTGAATCACTGCTGTATAAAATCCTTAACTTTTATGCTTTTTGTAAGCTTGTTCATCTTTTAGAGATTTAGAAAATGGATGACCAGAGAAAATATAGTACCATCTTATTCTGTGTCATTGTATTGATTATGTTTCTTTCTCACAGTACTGTTTCTGTGAGTCAATGCCCCATCGCTTAATTGTTTTGAGTGATTTGGATCCTACTTTTCTTTTATGTTACTGGATTTGCCAGTGGTGCAAGAAAAAACCTACAAAACAGACCAAACCGTTAAAACT

mRNA sequence

TTCCCTCTTCTTCCTTCTCTCTCCTCTCTCACGATTCGCACTCAGCGACCCCCTCTGCATTTCTTCCCCCTCGCCGGCAGTTTCCTCCTCACGGCGACAGCGTCGACGAAGGTGACCTCGACGCAGCGGCAACTCCAACAAGCACGTTCGCTCGTTCTACGGCTTGAAGCATCGCACGACGCGAGCCGCCGGGGTCTTCCCCCTCCGCGCAATAGCAACTTGAGACGGGATTCCGACTTTTCATTCCGTGCAACGCACCTCCGACTCGAGTAGCACACAGAATCCGGCAGCATCTTCGAGAAACGGCGACGTTCTTTCCACACAACCACCGGCTCGACACAGCACAAGGCAGGGGGTAGAAGTTTTGCCGCTTAGTTGTTGATAACTATTCTAGAAGTCACAATCAGTTGGATTGATCATGGATGTAGGAATTGACAACCTTCGACATGAGAAAGTTCAAAGGTTTGAGGAGTTTGTAGACCGTCGCTTGAAACCTGATTTGATTCATGCTATCGCTGAAAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTTTCAGACCTTCGTCGAAACATTGAGAATTTAGAGAAAAATAGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGACGTGCCAGATACACGAAGCATATTTGTAGATGTTGGGCTTGGGTTTCATGTGGAGTTCACATGGTCTGAAGCTTTAAAATTCATTTCTCTTAAAGAAGAAAGGTTAGCCAGACAGATAGAAGACTACACTCATTTAATTGCGTCAATAAAAGCGCAGATCAAGTTGGTTTGTGAAGGCATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTGGAAGGACGTGCATTTTAAGTTCCGTTCCTCATAGTTGCTTCTTTCCTGGGAATGAAGATGGTCCTGAATCACTGCTGTATAAAATCCTTAACTTTTATGCTTTTTGTAAGCTTGTTCATCTTTTAGAGATTTAGAAAATGGATGACCAGAGAAAATATAGTACCATCTTATTCTGTGTCATTGTATTGATTATGTTTCTTTCTCACAGTACTGTTTCTGTGAGTCAATGCCCCATCGCTTAATTGTTTTGAGTGATTTGGATCCTACTTTTCTTTTATGTTACTGGATTTGCCAGTGGTGCAAGAAAAAACCTACAAAACAGACCAAACCGTTAAAACT

Coding sequence (CDS)

ATGGATGTAGGAATTGACAACCTTCGACATGAGAAAGTTCAAAGGTTTGAGGAGTTTGTAGACCGTCGCTTGAAACCTGATTTGATTCATGCTATCGCTGAAAGGGATAAAGTGTTTGAGCAGCAGAAAGTGTTTTCAGACCTTCGTCGAAACATTGAGAATTTAGAGAAAAATAGTATAACTAATCTCAGAACGTTGGTCAATCTTGGCTCTGAAGTCTATGTACAAGGCGACGTGCCAGATACACGAAGCATATTTGTAGATGTTGGGCTTGGGTTTCATGTGGAGTTCACATGGTCTGAAGCTTTAAAATTCATTTCTCTTAAAGAAGAAAGGTTAGCCAGACAGATAGAAGACTACACTCATTTAATTGCGTCAATAAAAGCGCAGATCAAGTTGGTTTGTGAAGGCATTCGTGAATTATTACAACTTCCAGCAGAGAGGACTGTGGAAGGACGTGCATTTTAA

Protein sequence

MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF

Homology

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BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot
Match: Q54ND3 (Protein UXT homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0285389 PE=3 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-23
Identity = 56/136 (41.18%), Postives = 90/136 (66.18%), Query Frame = 0


Query: 9   RHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVN 68
           R + ++ +E F++  L  DL  +I +R+KV E  + + +L+ NIE L +N + +++T++N
Sbjct: 25  RLDSIKYYETFINETLNVDLNKSIEDREKVLENLENYLELKSNIELLIENKMDSMKTMIN 84

Query: 69  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIK 128
           LGSE YV+  V DT  I+VD+GLG HV++T  EA+KFI+ KE  L + +E+ T  I  IK
Sbjct: 85  LGSECYVKARVQDTSYIYVDIGLGIHVKYTLEEAIKFINEKETFLNKTVENQTKKINQIK 144

Query: 129 AQIKLVCEGIRELLQL 145
            +I L+  G++EL  L
Sbjct: 145 TKIDLIQNGLKELKHL 160

[Close]

BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot
Match: Q9WTZ0 (Protein UXT OS=Mus musculus OX=10090 GN=Uxt PE=1 SV=2)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ  V+  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYETFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    +  T    +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAH 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMMLEGLREL 145

[Close]

BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot
Match: Q63ZY7 (Protein UXT OS=Rattus norvegicus OX=10116 GN=Uxt PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-18
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ  V+  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLSVYLQLRNVIERLQETNHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    +  T    +IKA 
Sbjct: 75  CNFFVDTMVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDSLTKDSMNIKAN 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMMLEGLREL 145

[Close]

BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot
Match: A7T0W1 (Protein UXT homolog OS=Nematostella vectensis OX=45351 GN=v1g140887 PE=3 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-18
Identity = 52/133 (39.10%), Postives = 79/133 (59.40%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI--TNLRTLVN 70
           EK++++EEF+D+RL  DL      +D++  +   ++ L+ +IE ++K  +   +LR+ V+
Sbjct: 13  EKIRKYEEFLDQRLAKDLEAVFKSQDEIVAKITEYTQLKSSIEQIQKTDLKGKDLRSRVD 72

Query: 71  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIK 130
           LG   + Q  VPD   IF+ VG GF VEFT SEAL FI  K   L   ++      A IK
Sbjct: 73  LGCNFFCQASVPDPSRIFIAVGYGFFVEFTLSEALNFIEKKLAHLQHSVDKLGKDAAKIK 132

Query: 131 AQIKLVCEGIREL 142
           A +KLV  G++EL
Sbjct: 133 AHMKLVLGGLQEL 145

[Close]

BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot
Match: Q32P97 (Protein UXT OS=Bos taurus OX=9913 GN=UXT PE=2 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-17
Identity = 54/131 (41.22%), Postives = 76/131 (58.02%), Query Frame = 0


Query: 11  EKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVNLG 70
           EKV R+E F+   L+ DL   +  RDKV+EQ   +  LR  IE L++ + + L   V+LG
Sbjct: 15  EKVLRYEAFISDVLQRDLQKVLDHRDKVYEQLAKYLQLRNVIERLQEANHSELYMQVDLG 74

Query: 71  SEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIKAQ 130
              +V   VPDT  I+V +G GF +E T +EALKFI  K   L    ++ T    +IKA 
Sbjct: 75  CNFFVDTVVPDTSRIYVALGYGFFLELTLAEALKFIDRKSSLLTELSDNLTKDSMNIKAH 134

Query: 131 IKLVCEGIREL 142
           I ++ EG+REL
Sbjct: 135 IHMLLEGLREL 145

[Close]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL
Match: A0A5D3BXW7 (Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002080 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDVG D+ R+EKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIE+Y
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERTVEGR F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL
Match: A0A1S3CHV4 (protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1)

HSP 1 Score: 287.7 bits (735), Expect = 2.8e-74
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDVG D+ R+EKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIE+Y
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERTVEGR F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL
Match: A0A0A0K7F1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1)

HSP 1 Score: 284.6 bits (727), Expect = 2.4e-73
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDV  DN RHEKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TN+RTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIE+Y
Sbjct: 61  TNVRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERTVE R F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

[Close]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL
Match: A0A6J1E2W3 (protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1)

HSP 1 Score: 284.3 bits (726), Expect = 3.1e-73
Identity = 142/155 (91.61%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           M+VG DN RHEKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLR+NIENLEKNSI
Sbjct: 1   MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEAL FISL+EERLARQIE+Y
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALNFISLREERLARQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAER+VEG  F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERSVEGHVF 155

[Close]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL
Match: A0A6J1JPT0 (protein UXT homolog OS=Cucurbita maxima OX=3661 GN=LOC111488735 PE=4 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 7.0e-73
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDVGIDN R+EKVQRFEEFVDRRLKPDL+HAI+ERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAISERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNL TLVNLGSEVYVQG+V DTR IFVDVGLGFHVEFTWSEALKFISLKEERLARQ E+Y
Sbjct: 61  TNLTTLVNLGSEVYVQGNVADTRRIFVDVGLGFHVEFTWSEALKFISLKEERLARQTEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           THLIASIKAQIKLVCEGIRELLQLPAE+TVEGR F
Sbjct: 121 THLIASIKAQIKLVCEGIRELLQLPAEKTVEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. NCBI nr
Match: XP_008462175.1 (PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like protein [Cucumis melo var. makuwa] >TYK04010.1 protein UXT-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 287.7 bits (735), Expect = 5.8e-74
Identity = 145/155 (93.55%), Postives = 150/155 (96.77%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDVG D+ R+EKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVGTDSFRNEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIE+Y
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERTVEGR F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. NCBI nr
Match: XP_004141760.1 (protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_016378 [Cucumis sativus])

HSP 1 Score: 284.6 bits (727), Expect = 4.9e-73
Identity = 144/155 (92.90%), Postives = 148/155 (95.48%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDV  DN RHEKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVVTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TN+RTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEALKFISLKEERL RQIE+Y
Sbjct: 61  TNVRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALKFISLKEERLTRQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERTVE R F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTVEERVF 155

[Close]

BLAST of Lcy04g001760 vs. NCBI nr
Match: XP_022159095.1 (protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [Momordica charantia])

HSP 1 Score: 284.3 bits (726), Expect = 6.5e-73
Identity = 142/155 (91.61%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           M+VG DN RHEKVQRFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLR+NIENLEKNSI
Sbjct: 1   MNVGTDNFRHEKVQRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRKNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLRTLVNLGSEVYVQGDVPDTRSIFVD+GLGFHVEFTWSEAL FISL+EERLARQIE+Y
Sbjct: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDIGLGFHVEFTWSEALNFISLREERLARQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAER+VEG  F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERSVEGHVF 155

[Close]

BLAST of Lcy04g001760 vs. NCBI nr
Match: XP_038897562.1 (protein UXT homolog [Benincasa hispida])

HSP 1 Score: 284.3 bits (726), Expect = 6.5e-73
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MD GIDN R+EKV+RFEEFVDRRLKPDL+HAIAERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDAGIDNFRNEKVKRFEEFVDRRLKPDLVHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNLR LVNLGSEVY QGDVPDTRSIFVDVGLGFHVEFTWSEALKF+SLKEERLARQIE+Y
Sbjct: 61  TNLRMLVNLGSEVYGQGDVPDTRSIFVDVGLGFHVEFTWSEALKFLSLKEERLARQIEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           T LIASIKAQIKLVCEGIRELLQLPAERT+EGR F
Sbjct: 121 TQLIASIKAQIKLVCEGIRELLQLPAERTIEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. NCBI nr
Match: XP_022992427.1 (protein UXT homolog [Cucurbita maxima])

HSP 1 Score: 283.1 bits (723), Expect = 1.4e-72
Identity = 143/155 (92.26%), Postives = 149/155 (96.13%), Query Frame = 0


Query: 1   MDVGIDNLRHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSI 60
           MDVGIDN R+EKVQRFEEFVDRRLKPDL+HAI+ERDKVFEQQKVFSDLRRNIENLEKNSI
Sbjct: 1   MDVGIDNFRNEKVQRFEEFVDRRLKPDLVHAISERDKVFEQQKVFSDLRRNIENLEKNSI 60

Query: 61  TNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDY 120
           TNL TLVNLGSEVYVQG+V DTR IFVDVGLGFHVEFTWSEALKFISLKEERLARQ E+Y
Sbjct: 61  TNLTTLVNLGSEVYVQGNVADTRRIFVDVGLGFHVEFTWSEALKFISLKEERLARQTEEY 120

Query: 121 THLIASIKAQIKLVCEGIRELLQLPAERTVEGRAF 156
           THLIASIKAQIKLVCEGIRELLQLPAE+TVEGR F
Sbjct: 121 THLIASIKAQIKLVCEGIRELLQLPAEKTVEGRVF 155

[Close]

BLAST of Lcy04g001760 vs. TAIR 10
Match: AT1G26660.1 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 160.2 bits (404), Expect = 1.3e-39
Identity = 78/139 (56.12%), Postives = 105/139 (75.54%), Query Frame = 0


Query: 9   RHEKVQRFEEFVDRRLKPDLIHAIAERDKVFEQQKVFSDLRRNIENLEKNSITNLRTLVN 68
           R + +Q  EE +D+ LK  L+HA A RDK+FE+QK  SDLR+N+E LEKN + +L+T VN
Sbjct: 5   RQKDLQLLEEIIDKGLKQKLVHATASRDKIFEEQKTLSDLRKNLETLEKNGVNSLKTRVN 64

Query: 69  LGSEVYVQGDVPDTRSIFVDVGLGFHVEFTWSEALKFISLKEERLARQIEDYTHLIASIK 128
           LGSEVY+Q +VPDTR IF+DVGLGF+VEFT  EAL +I+ +EER  +Q+E+YT +I  IK
Sbjct: 65  LGSEVYMQAEVPDTRHIFMDVGLGFYVEFTRQEALDYIAQREERTQKQLEEYTGVITQIK 124

Query: 129 AQIKLVCEGIRELLQLPAE 148
            +IKL    I+++L LP E
Sbjct: 125 GRIKLAHYQIQQILNLPEE 143

[Close]

BLAST of Lcy04g001760 vs. TAIR 10
Match: AT1G26660.2 (Prefoldin chaperone subunit family protein )

HSP 1 Score: 124.0 bits (310), Expect = 1.0e-28
Identity = 61/108 (56.48%), Postives = 81/108 (75.00%), Query Frame = 0


Query: 40  EQQKVFSDLRRNIENLEKNSITNLRTLVNLGSEVYVQGDVPDTRSIFVDVGLGFHVEFTW 99
           E     SDLR+N+E LEKN + +L+T VNLGSEVY+Q +VPDTR IF+DVGLGF+VEFT 
Sbjct: 61  EDSSFSSDLRKNLETLEKNGVNSLKTRVNLGSEVYMQAEVPDTRHIFMDVGLGFYVEFTR 120

Query: 100 SEALKFISLKEERLARQIEDYTHLIASIKAQIKLVCEGIRELLQLPAE 148
            EAL +I+ +EER  +Q+E+YT +I  IK +IKL    I+++L LP E
Sbjct: 121 QEALDYIAQREERTQKQLEEYTGVITQIKGRIKLAHYQIQQILNLPEE 168

The following BLAST results are available for this feature:

BLAST of Lcy04g001760 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q54ND3	2.9e-23	41.18	Protein UXT homolog OS=Dictyostelium discoideum OX=44689 GN=DDB_G0285389 PE=3 SV...	[more]
Q9WTZ0	1.6e-18	41.98	Protein UXT OS=Mus musculus OX=10090 GN=Uxt PE=1 SV=2	[more]
Q63ZY7	1.6e-18	41.98	Protein UXT OS=Rattus norvegicus OX=10116 GN=Uxt PE=2 SV=1	[more]
A7T0W1	2.1e-18	39.10	Protein UXT homolog OS=Nematostella vectensis OX=45351 GN=v1g140887 PE=3 SV=1	[more]
Q32P97	1.4e-17	41.22	Protein UXT OS=Bos taurus OX=9913 GN=UXT PE=2 SV=1	[more]

BLAST of Lcy04g001760 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BXW7	2.8e-74	93.55	Protein UXT-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A1S3CHV4	2.8e-74	93.55	protein UXT homolog OS=Cucumis melo OX=3656 GN=LOC103500599 PE=4 SV=1	[more]
A0A0A0K7F1	2.4e-73	92.90	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G447080 PE=4 SV=1	[more]
A0A6J1E2W3	3.1e-73	91.61	protein UXT homolog OS=Momordica charantia OX=3673 GN=LOC111025536 PE=4 SV=1	[more]
A0A6J1JPT0	7.0e-73	92.26	protein UXT homolog OS=Cucurbita maxima OX=3661 GN=LOC111488735 PE=4 SV=1	[more]

BLAST of Lcy04g001760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462175.1	5.8e-74	93.55	PREDICTED: protein UXT homolog [Cucumis melo] >KAA0059317.1 protein UXT-like pro...	[more]
XP_004141760.1	4.9e-73	92.90	protein UXT homolog [Cucumis sativus] >KGN45393.1 hypothetical protein Csa_01637...	[more]
XP_022159095.1	6.5e-73	91.61	protein UXT homolog [Momordica charantia] >XP_022159096.1 protein UXT homolog [M...	[more]
XP_038897562.1	6.5e-73	92.26	protein UXT homolog [Benincasa hispida]	[more]
XP_022992427.1	1.4e-72	92.26	protein UXT homolog [Cucurbita maxima]	[more]

BLAST of Lcy04g001760 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G26660.1	1.3e-39	56.12	Prefoldin chaperone subunit family protein	[more]
AT1G26660.2	1.0e-28	56.48	Prefoldin chaperone subunit family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 38..58
None	No IPR available	PANTHER	PTHR13345:SF4	PROTEIN UXT	coord: 7..148
None	No IPR available	PANTHER	PTHR13345	MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 10	coord: 7..148
None	No IPR available	SUPERFAMILY	46579	Prefoldin	coord: 41..144
IPR009053	Prefoldin	GENE3D	1.10.287.370		coord: 9..149 e-value: 7.4E-29 score: 102.4
IPR004127	Prefoldin alpha-like	PFAM	PF02996	Prefoldin	coord: 33..134 e-value: 2.3E-18 score: 66.2

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g001760.1	Lcy04g001760.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
cellular_component	GO:0000785	chromatin
cellular_component	GO:0016592	mediator complex
molecular_function	GO:0003712	transcription coregulator activity