Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCTTCAATCTGAGGGGCACTGTTGTGTCGTTTTCGAAGAAGGAATTCATGTTGATGACTGGACTGTGGGGGGGTGAGAGTGAGATTGGCAGTGGCGATGTGCAAAGGAGAGAACCAACCGTTGACCTGCGGGCGAAATACTTTGGATCTTGCCCGACTGACATGACCCTTTCCACATTCGAAAAGGAGTATATGGACACTGTGGTATTCGACAACGACGATGATGCAGTGAAGGTGTCATTGGTGTACTACACCGAGTTGGCGATGTTGGGAAAAGACAAACAAAAGACGTCAGTGGACGAATCGTTGTTCTGTGAGGTGGAGGATTTGGCACACTTTAACGGCATTGCCTGGGGAACTCGAATATGGGAAAGGACCATCAAGGGCCTGCAAAATGCCCTGAAGGATAGAGTGGATGTATTTAAGAAGAAGGCGATGGAAGAGTGACCACAAAGTGAAATACAGTTTGAGTGGCTTTCCCCATGCCTTCCAGGTTAGTGTATGATCACATCGATTAAAGTAAGAATGGACGTAATTTAATTTTCTGTATTTTTTTATTCTTCGTATAGGTATGGGCGTATGAGACCATGTCCACGATGGCGGGGAAGTTTGCAGACAGAGTGAGGGGTGATGTGATCCCCCGCATACTCAGATGA
mRNA sequence
ATGAGCTTCAATCTGAGGGGCACTGTTGTGTCGTTTTCGAAGAAGGAATTCATGTTGATGACTGGACTGTGGGGGGGTGAGAGTGAGATTGGCAGTGGCGATGTGCAAAGGAGAGAACCAACCGTTGACCTGCGGGCGAAATACTTTGGATCTTGCCCGACTGACATGACCCTTTCCACATTCGAAAAGGAGTATATGGACACTGTGGTATTCGACAACGACGATGATGCAGTGAAGGTGTCATTGGTGTACTACACCGAGTTGGCGATGTTGGGAAAAGACAAACAAAAGACGTCAGTGGACGAATCGTTGTTCTGTGAGGTGGAGGATTTGGCACACTTTAACGGCATTGCCTGGGGAACTCGAATATGGGAAAGGACCATCAAGGGCCTGCAAAATGCCCTGAAGGATAGAGTGGATGTATGGGCGTATGAGACCATGTCCACGATGGCGGGGAAGTTTGCAGACAGAGTGAGGGGTGATGTGATCCCCCGCATACTCAGATGA
Coding sequence (CDS)
ATGAGCTTCAATCTGAGGGGCACTGTTGTGTCGTTTTCGAAGAAGGAATTCATGTTGATGACTGGACTGTGGGGGGGTGAGAGTGAGATTGGCAGTGGCGATGTGCAAAGGAGAGAACCAACCGTTGACCTGCGGGCGAAATACTTTGGATCTTGCCCGACTGACATGACCCTTTCCACATTCGAAAAGGAGTATATGGACACTGTGGTATTCGACAACGACGATGATGCAGTGAAGGTGTCATTGGTGTACTACACCGAGTTGGCGATGTTGGGAAAAGACAAACAAAAGACGTCAGTGGACGAATCGTTGTTCTGTGAGGTGGAGGATTTGGCACACTTTAACGGCATTGCCTGGGGAACTCGAATATGGGAAAGGACCATCAAGGGCCTGCAAAATGCCCTGAAGGATAGAGTGGATGTATGGGCGTATGAGACCATGTCCACGATGGCGGGGAAGTTTGCAGACAGAGTGAGGGGTGATGTGATCCCCCGCATACTCAGATGA
Protein sequence
MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGSCPTDMTLSTFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAWGTRIWERTIKGLQNALKDRVDVWAYETMSTMAGKFADRVRGDVIPRILR
Homology
BLAST of Lcy04g001650 vs. ExPASy TrEMBL
Match:
A0A0A0KM59 (DUF1985 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 5.7e-36
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V R E T L KYFG+ DM
Sbjct: 79 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----PVPRVEATKSLGTKYFGNELVVDMNPL 138
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 139 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 198
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTMAGK 169
G +WE+T++GLQNALK++VD VWAYE +S++AGK
Sbjct: 199 GHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSIAGK 258
BLAST of Lcy04g001650 vs. ExPASy TrEMBL
Match:
A0A1S3ATU8 (uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V+R E + L KYFG+ DM
Sbjct: 162 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----SVRRVEASKSLGTKYFGNELVVDMNPI 221
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 222 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 281
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTM-AG 169
G +WERT++GLQNALK++VD VWAYE +S+M AG
Sbjct: 282 GHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSMAAG 341
BLAST of Lcy04g001650 vs. ExPASy TrEMBL
Match:
A0A1S3AUB0 (uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103482899 PE=4 SV=1)
HSP 1 Score: 157.1 bits (396), Expect = 6.3e-35
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V+R E + L KYFG+ DM
Sbjct: 160 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----SVRRVEASKSLGTKYFGNELVVDMNPI 219
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 220 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 279
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTM-AG 169
G +WERT++GLQNALK++VD VWAYE +S+M AG
Sbjct: 280 GHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSMAAG 339
BLAST of Lcy04g001650 vs. ExPASy TrEMBL
Match:
A0A5A7TGU0 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G001140 PE=4 SV=1)
HSP 1 Score: 156.8 bits (395), Expect = 8.2e-35
Identity = 87/196 (44.39%), Postives = 122/196 (62.24%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V+R E + L KYFG+ DM
Sbjct: 85 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----SVRRVEASKSLGTKYFGNELVVDMNPI 144
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + + F +D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 145 TFEERYKN-LNFCDDLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 204
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTM-AG 169
G +WERT++GLQNALK++VD VWAYE +S+M AG
Sbjct: 205 GHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSMAAG 264
BLAST of Lcy04g001650 vs. ExPASy TrEMBL
Match:
A0A6J1DSS5 (uncharacterized protein LOC111023969 OS=Momordica charantia OX=3673 GN=LOC111023969 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.8e-34
Identity = 82/194 (42.27%), Postives = 117/194 (60.31%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGSCPTDMTLST 60
M F++ GT+V+FSK EF+LMTGLW + +Q++ LR +YF D+ L
Sbjct: 79 MRFDILGTIVTFSKAEFLLMTGLWRSSGRV----LQKKVSKNRLRREYFKDV-VDLRLEE 138
Query: 61 FEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAWG 120
FE+EY +VF NDDDAVKVSL+YYTE+ M+GK+K K++VD+ L+ +VEDL +FN + WG
Sbjct: 139 FEQEY-KKIVFANDDDAVKVSLIYYTEIVMMGKNKGKSNVDKDLYGQVEDLDYFNNMDWG 198
Query: 121 TRIWERTIKGLQNALKDRV--------------------------DVWAYETMSTMAGKF 169
T IW+RT+KGLQ+A+KD+V VWAYE + ++
Sbjct: 199 TTIWQRTLKGLQSAMKDKVVNYKNKVTTNKKFQVRYSLTGFPVAFQVWAYEIIPSLMRNG 258
BLAST of Lcy04g001650 vs. NCBI nr
Match:
KGN49944.1 (hypothetical protein Csa_000148 [Cucumis sativus])
HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V R E T L KYFG+ DM
Sbjct: 79 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----PVPRVEATKSLGTKYFGNELVVDMNPL 138
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 139 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 198
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTMAGK 169
G +WE+T++GLQNALK++VD VWAYE +S++AGK
Sbjct: 199 GHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSIAGK 258
BLAST of Lcy04g001650 vs. NCBI nr
Match:
XP_031741885.1 (uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus])
HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V R E T L KYFG+ DM
Sbjct: 162 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----PVPRVEATKSLGTKYFGNELVVDMNPL 221
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 222 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 281
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTMAGK 169
G +WE+T++GLQNALK++VD VWAYE +S++AGK
Sbjct: 282 GHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSIAGK 341
BLAST of Lcy04g001650 vs. NCBI nr
Match:
XP_011654656.1 (uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus])
HSP 1 Score: 160.6 bits (405), Expect = 1.2e-35
Identity = 87/195 (44.62%), Postives = 121/195 (62.05%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V R E T L KYFG+ DM
Sbjct: 162 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----PVPRVEATKSLGTKYFGNELVVDMNPL 221
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 222 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 281
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTMAGK 169
G +WE+T++GLQNALK++VD VWAYE +S++AGK
Sbjct: 282 GHILWEKTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSIAGK 341
BLAST of Lcy04g001650 vs. NCBI nr
Match:
XP_008437500.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo])
HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V+R E + L KYFG+ DM
Sbjct: 162 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----SVRRVEASKSLGTKYFGNELVVDMNPI 221
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 222 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 281
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTM-AG 169
G +WERT++GLQNALK++VD VWAYE +S+M AG
Sbjct: 282 GHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSMAAG 341
BLAST of Lcy04g001650 vs. NCBI nr
Match:
XP_008437501.1 (PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo])
HSP 1 Score: 157.1 bits (396), Expect = 1.3e-34
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 0
Query: 1 MSFNLRGTVVSFSKKEFMLMTGLWGGESEIGSGDVQRREPTVDLRAKYFGS-CPTDMTLS 60
MSFNL G + +FSK+EF+L+TGLW ++ V+R E + L KYFG+ DM
Sbjct: 160 MSFNLNGIIATFSKEEFLLVTGLWPSPTK----SVRRVEASKSLGTKYFGNELVVDMNPI 219
Query: 61 TFEKEYMDTVVFDNDDDAVKVSLVYYTELAMLGKDKQKTSVDESLFCEVEDLAHFNGIAW 120
TFE+ Y + +D D DAVKV+LVYYTELAM+GKD+ K+ +++SL +VEDL ++N + W
Sbjct: 220 TFEERYKNLNFYD-DLDAVKVTLVYYTELAMMGKDRTKSIINKSLLDDVEDLKYYNSLDW 279
Query: 121 GTRIWERTIKGLQNALKDRVD--------------------------VWAYETMSTM-AG 169
G +WERT++GLQNALK++VD VWAYE +S+M AG
Sbjct: 280 GHILWERTLRGLQNALKNKVDMYKKKVKLNKNYNVKYSLPGFPHAFQVWAYEIISSMAAG 339
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A0A0KM59 | 5.7e-36 | 44.62 | DUF1985 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G141180 PE=... | [more] |
| A0A1S3ATU8 | 6.3e-35 | 44.39 | uncharacterized protein LOC103482899 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| A0A1S3AUB0 | 6.3e-35 | 44.39 | uncharacterized protein LOC103482899 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... | [more] |
| A0A5A7TGU0 | 8.2e-35 | 44.39 | Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold376G... | [more] |
| A0A6J1DSS5 | 1.8e-34 | 42.27 | uncharacterized protein LOC111023969 OS=Momordica charantia OX=3673 GN=LOC111023... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| KGN49944.1 | 1.2e-35 | 44.62 | hypothetical protein Csa_000148 [Cucumis sativus] | [more] |
| XP_031741885.1 | 1.2e-35 | 44.62 | uncharacterized protein LOC105435430 isoform X2 [Cucumis sativus] | [more] |
| XP_011654656.1 | 1.2e-35 | 44.62 | uncharacterized protein LOC105435430 isoform X1 [Cucumis sativus] | [more] |
| XP_008437500.1 | 1.3e-34 | 44.39 | PREDICTED: uncharacterized protein LOC103482899 isoform X1 [Cucumis melo] | [more] |
| XP_008437501.1 | 1.3e-34 | 44.39 | PREDICTED: uncharacterized protein LOC103482899 isoform X2 [Cucumis melo] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
