Lcy04g000690 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g000690
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	LINE-1 retrotransposable element ORF2 protein
Location	Chr04: 2315270 .. 2315890 (+)
RNA-Seq Expression	Lcy04g000690
Synteny	Lcy04g000690

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTGCTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATGATAGTCTTCAACGATAA

mRNA sequence

ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTGCTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATGATAGTCTTCAACGATAA

Coding sequence (CDS)

ATGGTGAAAGATGTGTGGAACAAAAATGACTCTTTTTGGGACCTTCAGTTGGTTAGGAACTTGAAAGACGACGAAGCTGCTGAATGGACTGAGTTAAGTTTCATCCTTGAACCCATTGTCCTCTCACAAGCTGCTGATTTGTGGAAATGGCCTCTTAGCACAAACGGTCACTTCTCCACAAAGTCTTTGATGGCCGATATGGGAGACTTATCCTCCCATTTGGAGACTCAATTAGTTTGGGTTATTTGGAAAGATACATACCCAAAGAAGATCAAATTCTTCCTTTGGGGAGTGGCTCATAGGGCAATTAGTACGAAAGACAATTTACAGAGACGCATGCCTACATTGGCCTTATCCCCAAGCTGGTGTTCTTTATGCAAGCAAGATGATGAAACCCTTGATCACTTATTCATCCATTGTCCATTTGCATGGGGTTTTTGGACTAAAATTCTTTCAACTTTTGGGTGGAATTTGGCTTTTACAGGAGACATCAAAAGCACTCTTCATTCCATCTTGTTGGGCCACCCTTTTAAGGATATTAAAGCGGTTTTATGGACACACATTATAAGAGCTTTTTTCTGGGTCTTATGGAAGGAAAGGAATGATAGTCTTCAACGATAA

Protein sequence

MVKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTKSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERNDSLQR

Homology

[Close]

BLAST of Lcy04g000690 vs. ExPASy TrEMBL
Match: A0A5A7TIB8 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold206G00430 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.8e-31
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 848 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 908 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
             K ++  + I    W +W ERN+ +
Sbjct: 968 TQKGLITFNTIAILLWKIWLERNNRI 991

[Close]

BLAST of Lcy04g000690 vs. ExPASy TrEMBL
Match: A0A5A7TR15 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003050 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 8.8e-31
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
             K ++  + I    W +W ERN+ +
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRI 897

[Close]

BLAST of Lcy04g000690 vs. ExPASy TrEMBL
Match: A0A5A7TSA7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G001840 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-29
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
           + K ++  +      W +W ERN+ +
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRI 442

[Close]

BLAST of Lcy04g000690 vs. ExPASy TrEMBL
Match: A0A5D3E1E3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G001840 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 3.7e-29
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
           + K ++  +      W +W ERN+ +
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRI 399

[Close]

BLAST of Lcy04g000690 vs. ExPASy TrEMBL
Match: A0A5A7T9I7 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00980 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.1e-28
Identity = 65/206 (31.55%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
            VK+ WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955

Query: 62   SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+   +A+     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 956  SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075

Query: 182  DIKAVLWTHIIRAFFWVLWKERNDSL 205
            + K ++  +      W +W ERN+ +
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRI 1099

[Close]

BLAST of Lcy04g000690 vs. NCBI nr
Match: KAA0044556.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-30
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 694 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 753

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 754 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 813

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 814 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 873

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
             K ++  + I    W +W ERN+ +
Sbjct: 874 TQKGLITFNTIAILLWKIWLERNNRI 897

[Close]

BLAST of Lcy04g000690 vs. NCBI nr
Match: KAA0041397.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 143.7 bits (361), Expect = 1.8e-30
Identity = 68/206 (33.01%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
           VKD+WN +   W++ + R L+D E   W  +   L   +  +      W L++N  F T 
Sbjct: 788 VKDLWNPSLKDWNIHVNRPLRDHEKNLWHNIKASLPTPLPDRGPSKPLWKLNSNNIFDTA 847

Query: 62  SLMADMGDLS---SHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
           S+  D+ + S   ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 848 SIKKDLSEASASPTNFHPSLYKTLWKVDFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 907

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN +   D+KS   +I      K
Sbjct: 908 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAQALLKWN-STPNDVKSLAQNI-CSLNIK 967

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
             K ++  + I    W +W ERN+ +
Sbjct: 968 TQKGLITFNTIAILLWKIWLERNNRI 991

[Close]

BLAST of Lcy04g000690 vs. NCBI nr
Match: KAA0044451.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-29
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 239 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 298

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 299 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 358

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 359 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 418

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
           + K ++  +      W +W ERN+ +
Sbjct: 419 NQKGLITFNTSAILLWKIWLERNNRI 442

[Close]

BLAST of Lcy04g000690 vs. NCBI nr
Match: TYK29578.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 138.3 bits (347), Expect = 7.6e-29
Identity = 66/206 (32.04%), Postives = 110/206 (53.40%), Query Frame = 0


Query: 2   VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFST- 61
           VKD WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 196 VKDFWNPSSNDWHLHINRPLRDHEKNLWHNIKASLPTPLPNRGLPKPLWKLNSNNIFDTA 255

Query: 62  --KSLMADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
             K ++++     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P  AL
Sbjct: 256 SVKKILSEAPVSPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWAL 315

Query: 122 SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
           SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 316 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLKWNRTPT-DVQSLVQNI-CSLNIR 375

Query: 182 DIKAVLWTHIIRAFFWVLWKERNDSL 205
           + K ++  +      W +W ERN+ +
Sbjct: 376 NQKGLITFNTSAILLWKIWLERNNRI 399

[Close]

BLAST of Lcy04g000690 vs. NCBI nr
Match: KAA0039950.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK24553.1 LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 135.2 bits (339), Expect = 6.4e-28
Identity = 65/206 (31.55%), Postives = 109/206 (52.91%), Query Frame = 0


Query: 2    VKDVWNKNDSFWDLQLVRNLKDDEAAEWTELSFILEPIVLSQAADLWKWPLSTNGHFSTK 61
            VK+ WN + + W L + R L+D E   W  +   L   + ++      W L++N  F T 
Sbjct: 896  VKEFWNPSSNDWHLHINRPLRDHEENLWHNIKASLPTPLPNRGHPKPLWNLNSNNIFDTA 955

Query: 62   SL---MADMGDLSSHLETQLVWVIWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLAL 121
            S+   +A+     ++    L   +WK  +PKK KFF+W + H  I+T D LQ+R+P   L
Sbjct: 956  SVKRAIAEAPISPANFHPNLYKTLWKVEFPKKCKFFIWTLIHGCINTADRLQKRLPNWTL 1015

Query: 122  SPSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFK 181
            SP+WC +C +  E ++HLFIHCP++   W+K  +   WN   T D++S + +I      +
Sbjct: 1016 SPNWCYMCNKSQEDINHLFIHCPYSQQLWSKAKALLNWNSTPT-DVQSLIQNI-CSLNIR 1075

Query: 182  DIKAVLWTHIIRAFFWVLWKERNDSL 205
            + K ++  +      W +W ERN+ +
Sbjct: 1076 NQKGLITFNTNATILWKIWLERNNRI 1099

[Close]

BLAST of Lcy04g000690 vs. TAIR 10
Match: AT3G25270.1 (Ribonuclease H-like superfamily protein )

HSP 1 Score: 60.8 bits (146), Expect = 1.4e-09
Identity = 42/120 (35.00%), Postives = 54/120 (45.00%), Query Frame = 0


Query: 82  IWKDTYPKKIKFFLWGVAHRAISTKDNLQRRMPTLALSPSWCSLCKQDDETLDHLFIHCP 141
           IWK     KIK FLW +   A++T DNL+RR      +   C  C Q+DET  HLF  C 
Sbjct: 18  IWKLKTAPKIKHFLWKLLSGALATGDNLKRRH---IRNHPQCHRCCQEDETSQHLFFDCF 77

Query: 142 FAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKDIKAVLWTHIIRAFFWVLWKERN 201
           +A   W +        L  TG    T   +LL     + +  L+   I    W LWK RN
Sbjct: 78  YAQQVW-RASGIPHQELRTTGITMETKMELLLSSCLANRQPQLFNLAI-WILWRLWKSRN 132

[Close]

BLAST of Lcy04g000690 vs. TAIR 10
Match: AT1G45063.1 (copper ion binding;electron carriers )

HSP 1 Score: 44.3 bits (103), Expect = 1.4e-04
Identity = 29/83 (34.94%), Postives = 38/83 (45.78%), Query Frame = 0


Query: 120 PSWCSLCKQDDETLDHLFIHCPFAWGFWTKILSTFGWNLAFTGDIKSTLHSILLGHPFKD 179
           PS C LC   DET  H+F  CPF+   W    S F  N   T        +  L HP +D
Sbjct: 281 PSLCLLCNALDETRQHVFFDCPFSHEVW----SFFCSNARVTPPRMFKDSARWLRHPCRD 340

Query: 180 IK-AVLWTHIIRAFFWVLWKERN 202
            K A +     +A  + +W+ERN
Sbjct: 341 KKVAFILKLAYQASVYHIWRERN 359

The following BLAST results are available for this feature:

BLAST of Lcy04g000690 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g000690 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TIB8	8.8e-31	33.01	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TR15	8.8e-31	33.01	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7TSA7	3.7e-29	32.04	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3E1E3	3.7e-29	32.04	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5A7T9I7	3.1e-28	31.55	LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Lcy04g000690 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044556.1	1.8e-30	33.01	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0041397.1	1.8e-30	33.01	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0044451.1	7.6e-29	32.04	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
TYK29578.1	7.6e-29	32.04	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa]	[more]
KAA0039950.1	6.4e-28	31.55	LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] >TYK245...	[more]

BLAST of Lcy04g000690 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25270.1	1.4e-09	35.00	Ribonuclease H-like superfamily protein	[more]
AT1G45063.1	1.4e-04	34.94	copper ion binding;electron carriers	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR026960	Reverse transcriptase zinc-binding domain	PFAM	PF13966	zf-RVT	coord: 76..147 e-value: 3.7E-18 score: 66.0

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g000690.1	Lcy04g000690.1	mRNA