Lcy04g000600 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy04g000600
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Ulp1-like peptidase
Location	Chr04: 2177890 .. 2179333 (+)
RNA-Seq Expression	Lcy04g000600
Synteny	Lcy04g000600

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAATCGACGATAGGTTTCGACCCCGAGCAGTGTACAATCCAGGCCACGCGTACTCGTCGGCCGTGTATAAGCCTGAGGGTGGGTAGTATGGGTCTCCCGAAAAAGTTCTTTAAGGAACTACTGATGAACAACGAATGGGTTGGAGACGATGTAATTTATTTTATATTTGTTGTTTAGAACTCTGGTATATCACTAACAAAACGTTTCCCATAGGCCATGAACACCCTGTTCGATTTCGTCTTCAACAAGATGTCAAGTCGGCCAAATATCTGAGCCCACAGGTTTGCGATGTTATCGTCGAGTATGGGTGTAAATATTTGTTCCACCTAACATTTTAAGTAGAATTCATACATTAGTTATAATAAATAATGTCGTTACAAAATTATTGTGTCGCATGATTATCTAAATCATCTGGAGGGGTTATACAAAATGATCAAGGGCAAGAGTTGTCTTGACCAAACCATCGAGTGGAGTAATGAGGATGAACTGCCAACCTATCTGATGGGTATGGTACTTGGCTACGGACCAGCGTGGTCGGATATGGACATTGTCTACATTCCACGGTCCCACCATGATCATTGGTTCATTGTGGCGATCGACATGAATAGGGATAGCCCATTCATCTTTGACTCGATGCCCACGTATATCTCAGATGAGAAGCTGGTTGAGCTGTTGGAGTCGATGTCATACACGGTGCCATCACTTGTCAGGTTTTGTAAAGTCAACACGTCCAAGCCTGATCTACCAGACGATATGGACCTTCCATGGCAAATCACTCGTCTCCTGAAGAAGAACATTCAGTATAGGTCGCTCGACTGCGGTATATTCGCTAGTAAGTTATTCGAATGGTTAATTACTTGTAGCAACCTCAATTGTATTAGCCAAGATAGGATGGGTGAGTATAGACACCAATACGCATGCCAGTTGTGGGAAGGTAATGCATACTTTTGAGGTCCATATGACCAGTATTTTTTGGACGTGTACTGTTTATATATAAATAATATATTGATTTGTTTATACGAATTATGGCTCCTGTGTGTTTATAAAATTAATTGTTTGAGATGTGGTGTGAATTGAAGTGGGTGTTGATTCGTTGAGTTAGAAGTGTTGTTTGTTTGTTTGGACTTGTATTAGACGTGTTATAGATCATCTTTTCCAGGTCAATCGAGAGCGAGACCGAAAGCACCGAAAGCACCGAAAGCGCGAAACGAGAATCGATCAGAGGGCATTGTAATATACATACAATTACATGTTCACATACACGGATCAGTATGTAGGATAGTTGGGGGATTAAGAACCATGGTAATTGGATTAAAAAACTTATAAAGCACGTACAAATTTTCCTAAAAAAATTTGAACCGGTATAGCTCTCGGTGATCAATCTCACACTTATCTTTTTTTCTTCATCCACAGAATGCGAGAATTGTGCTCTATTCTTGA

mRNA sequence

ATGATAATCGACGATAGGTTTCGACCCCGAGCAGTGTACAATCCAGGCCACGCGTACTCGTCGGCCGTGTATAAGCCTGAGGGCCATGAACACCCTGTTCGATTTCGTCTTCAACAAGATGTCAAGTCGGCCAAATATCTGAGCCCACAGGGCAAGAGTTGTCTTGACCAAACCATCGAGTGGAGTAATGAGGATGAACTGCCAACCTATCTGATGGGTATGGTACTTGGCTACGGACCAGCGTGGTCGGATATGGACATTGTCTACATTCCACGGTCCCACCATGATCATTGGTTCATTGTGGCGATCGACATGAATAGGGATAGCCCATTCATCTTTGACTCGATGCCCACGTATATCTCAGATGAGAAGCTGGTTGAGCTGTTGGAGTCGATGTCATACACGGTGCCATCACTTGTCAGGTTTTGTAAAGTCAACACGTCCAAGCCTGATCTACCAGACGATATGGACCTTCCATGGCAAATCACTCGTCTCCTGAAGAAGAACATTCAGTATAGGTCGCTCGACTGCGGTATATTCGCTAGTCAATCGAGAGCGAGACCGAAAGCACCGAAAGCACCGAAAGCGCGAAACGAGAATCGATCAGAGGGCATTGTAATATACATACAATTACATGTTCACATACACGGATCAAATGCGAGAATTGTGCTCTATTCTTGA

Coding sequence (CDS)

ATGATAATCGACGATAGGTTTCGACCCCGAGCAGTGTACAATCCAGGCCACGCGTACTCGTCGGCCGTGTATAAGCCTGAGGGCCATGAACACCCTGTTCGATTTCGTCTTCAACAAGATGTCAAGTCGGCCAAATATCTGAGCCCACAGGGCAAGAGTTGTCTTGACCAAACCATCGAGTGGAGTAATGAGGATGAACTGCCAACCTATCTGATGGGTATGGTACTTGGCTACGGACCAGCGTGGTCGGATATGGACATTGTCTACATTCCACGGTCCCACCATGATCATTGGTTCATTGTGGCGATCGACATGAATAGGGATAGCCCATTCATCTTTGACTCGATGCCCACGTATATCTCAGATGAGAAGCTGGTTGAGCTGTTGGAGTCGATGTCATACACGGTGCCATCACTTGTCAGGTTTTGTAAAGTCAACACGTCCAAGCCTGATCTACCAGACGATATGGACCTTCCATGGCAAATCACTCGTCTCCTGAAGAAGAACATTCAGTATAGGTCGCTCGACTGCGGTATATTCGCTAGTCAATCGAGAGCGAGACCGAAAGCACCGAAAGCACCGAAAGCGCGAAACGAGAATCGATCAGAGGGCATTGTAATATACATACAATTACATGTTCACATACACGGATCAAATGCGAGAATTGTGCTCTATTCTTGA

Protein sequence

MIIDDRFRPRAVYNPGHAYSSAVYKPEGHEHPVRFRLQQDVKSAKYLSPQGKSCLDQTIEWSNEDELPTYLMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMDLPWQITRLLKKNIQYRSLDCGIFASQSRARPKAPKAPKARNENRSEGIVIYIQLHVHIHGSNARIVLYS

Homology

[Close]

BLAST of Lcy04g000600 vs. ExPASy TrEMBL
Match: A0A6J1DRI2 (uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022515 PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.2e-11
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 71  LMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPTYISDEKLVELLE 130
           ++G V  + P+W D+D+VY P    DHW +V IDM +   F++D +P +IS  KL+  + 
Sbjct: 4   VLGHVEDFIPSWVDVDVVYSPLCIRDHWVLVXIDMTQSEIFVYDPLPGHISTSKLMTDIR 63

Query: 131 SMSYTVPSLVRFC-KVNTSKPDLPDDMDLPWQITRLLKKNIQYRSLDCGIFA 182
            +S+T+PSL+  C  ++T+   L       W++        Q  S+DCGIFA
Sbjct: 64  PLSHTIPSLLYACGLMDTTDCKL---KKTSWRVYHPTTDTRQKGSIDCGIFA 112

[Close]

BLAST of Lcy04g000600 vs. ExPASy TrEMBL
Match: A0A6J1DN69 (uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022140 PE=3 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 6.1e-09
Identity = 32/73 (43.84%), Postives = 48/73 (65.75%), Query Frame = 0


Query: 71  LMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPTYISDEKLVELLE 130
           ++G V  + PAW D+D+VY      DHW +VAIDM +   F++DS+P +IS  KL+  L 
Sbjct: 4   VLGQVEDFIPAWVDVDVVYSLLLIRDHWVLVAIDMTQSEIFVYDSLPGHISTSKLMIDLR 63

Query: 131 SMSYTVPSLVRFC 144
            +S+T+PSL+  C
Sbjct: 64  PLSHTIPSLLYAC 76

[Close]

BLAST of Lcy04g000600 vs. ExPASy TrEMBL
Match: A0A5A7TW86 (MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1059G00010 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 7.9e-09
Identity = 44/146 (30.14%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 40   DVKSAKYLSPQGKSCLDQTIEWSNEDELPTYLMGMVLGYG--PAWSDMDIVYIPRSHHDH 99
            D K A++  P     +     W+ +D +  Y    V  Y   P W D++ V    +  +H
Sbjct: 964  DNKKAEWTDPTAHLTI-----WTEKD-MEYYFNTAVGDYDHIPGWGDVNYVISCINIKEH 1023

Query: 100  WFIVAIDMNRDSPFIFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMD 159
            W ++A D+ +   ++FDSMP Y+  + + E L+  +  +PSL     VN        D  
Sbjct: 1024 WLVIAADLRKCKIYVFDSMPNYVEQKLVNETLQMPARCIPSLAIAIGVNLHSDHFTYD-- 1083

Query: 160  LPWQITRLLKKNIQYRSLDCGIFASQ 184
             PW I R      + RSLDCGIF S+
Sbjct: 1084 -PWPIRRSKATLQKGRSLDCGIFCSK 1100

[Close]

BLAST of Lcy04g000600 vs. ExPASy TrEMBL
Match: A0A5A7TPP5 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00150 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 1.8e-08
Identity = 44/146 (30.14%), Postives = 67/146 (45.89%), Query Frame = 0


Query: 40  DVKSAKYLSPQGKSCLDQTIEWSNEDELPTYLMGMVLGYG--PAWSDMDIVYIPRSHHDH 99
           D K A++  P     +     W+ +D +  Y    V  Y   P W D++ V    +  +H
Sbjct: 189 DNKKAEWTDPTAYLTI-----WTEKD-VEYYFNNAVGDYDQIPGWGDVNYVISCINIKEH 248

Query: 100 WFIVAIDMNRDSPFIFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMD 159
           W  +A DM +   ++FDSMP Y+  + + E L+  +  +PSL    +VN           
Sbjct: 249 WLAIAADMRKCKIYVFDSMPNYVEQKLVDEALQMRARCIPSLAIAIRVNLHSDHFTYG-- 308

Query: 160 LPWQITRLLKKNIQYRSLDCGIFASQ 184
            PW I R      + RSLDCGIF S+
Sbjct: 309 -PWPICRSKATLQKGRSLDCGIFCSK 325

[Close]

BLAST of Lcy04g000600 vs. ExPASy TrEMBL
Match: A0A5A7UYV8 (Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G00200 PE=3 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 5.1e-08
Identity = 40/125 (32.00%), Postives = 61/125 (48.80%), Query Frame = 0


Query: 61  WSNEDELPTYLMGMVLGYG--PAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPT 120
           W+ +D +  Y   +V  Y   P W D++ V I  +  +HW  +A DM +   ++FDSMP 
Sbjct: 433 WTEKD-MEYYFNSVVGDYNHMPGWGDVNYVIICINIKEHWLAIAADMRKCRIYVFDSMPN 492

Query: 121 YISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMDLPWQITRLLKKNIQYRSLDCG 180
           Y+  + + E L+  +  +PSL     VN            PW I R      + RSLDCG
Sbjct: 493 YVEQKLVDEALQMPARYIPSLAIAIGVNLHSNHFTYG---PWPIRRSKATLQKGRSLDCG 552

Query: 181 IFASQ 184
           IF ++
Sbjct: 553 IFCAK 553

[Close]

BLAST of Lcy04g000600 vs. NCBI nr
Match: XP_038875042.1 (uncharacterized protein LOC120067568 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 3.9e-18
Identity = 47/117 (40.17%), Postives = 71/117 (60.68%), Query Frame = 0


Query: 64  EDELPTYLMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPTYISDE 123
           ++ LP Y+MG    +   WSD+D VY   +   HW ++A ++NRD  F+FDS+P+  S +
Sbjct: 3   DEMLPDYVMGK---FDVKWSDVDFVYTTTNIDQHWMLIAFNLNRDQLFVFDSLPSMTSKK 62

Query: 124 KLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMDLPWQITRLLKKNIQYRSLDCGIF 181
           KL   LE ++YT+PSL+ +C +   KPD+       W+I++    N QY  LDCGIF
Sbjct: 63  KLESFLEPLTYTLPSLLHYCDLKRWKPDIKTSR---WKISQPTSTNTQYGLLDCGIF 113

[Close]

BLAST of Lcy04g000600 vs. NCBI nr
Match: XP_038874902.1 (uncharacterized protein LOC120067405 [Benincasa hispida])

HSP 1 Score: 102.4 bits (254), Expect = 5.1e-18
Identity = 51/129 (39.53%), Postives = 77/129 (59.69%), Query Frame = 0


Query: 52  KSCLDQTIEWSNEDELPTYLMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPF 111
           K+ L+  + W +ED    Y+ G    +   W+D+D VY   +  DHW ++A+D+ R   F
Sbjct: 42  KTLLEAALAWEDEDTYKDYVTGK---FDIKWADVDFVYTAMNISDHWMVLAMDIYRGHIF 101

Query: 112 IFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMDLPWQITRLLKKNIQ 171
           +FDS+ +Y    KLV  LE ++ TV SL+ +C V+ SK DL     + W+I+R +  NIQ
Sbjct: 102 VFDSLSSYTPMTKLVNWLELLTVTVLSLLHYCDVDRSKSDL---YTVRWKISRPMNVNIQ 161

Query: 172 YRSLDCGIF 181
           + SLDCGIF
Sbjct: 162 HGSLDCGIF 164

[Close]

BLAST of Lcy04g000600 vs. NCBI nr
Match: XP_038902498.1 (uncharacterized protein LOC120089158 [Benincasa hispida])

HSP 1 Score: 94.4 bits (233), Expect = 1.4e-15
Identity = 44/121 (36.36%), Postives = 69/121 (57.02%), Query Frame = 0


Query: 32  PVRFRLQQDVKSAKYLSPQGKSCLDQTIEWSNEDELPTYLMGMVLGYGPAWSDMDIVYIP 91
           P+      + +   Y   + KS L+  + W +E  LP Y+MG    +   W D+D +Y  
Sbjct: 192 PIGITSHLNSRDGVYKHMKNKSTLEAAVAWVDE-TLPDYVMGK---FDVKWLDVDFIYTT 251

Query: 92  RSHHDHWFIVAIDMNRDSPFIFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPD 151
            +   HW +VA D+NR   F+FDS+P+  S +KL   LES++YT+PSL+ +C +  SKPD
Sbjct: 252 TNIDQHWMLVAFDLNRGRLFVFDSLPSMTSKKKLESFLESLTYTLPSLLHYCDLKCSKPD 308

Query: 152 L 153
           +
Sbjct: 312 I 308

[Close]

BLAST of Lcy04g000600 vs. NCBI nr
Match: XP_038899753.1 (uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 uncharacterized protein LOC120086987 [Benincasa hispida])

HSP 1 Score: 91.3 bits (225), Expect = 1.2e-14
Identity = 42/121 (34.71%), Postives = 72/121 (59.50%), Query Frame = 0


Query: 50  QGKSCLDQTIEWSNEDELPTYLMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDS 109
           + K+ L+  + W +ED    Y++G    +   W+D+D +Y   +  +HW ++A+D+NR  
Sbjct: 86  KNKTLLEAALAWEDEDTYKNYVIGK---FDVKWADVDFIYTAMNISEHWIVLAMDINRGH 145

Query: 110 PFIFDSMPTYISDEKLVELLESMSYTVPSLVRFCKVNTSKPDLPDDMDLPWQITRLLKKN 169
            F+FDS+P+Y    KLV  LE ++ TVPSL+ +C V+ SK DL     + W+ +R +  +
Sbjct: 146 IFVFDSLPSYTPMTKLVNWLEPLTVTVPSLLHYCDVDRSKSDL---STVRWKTSRPMNVD 200

Query: 170 I 171
           I
Sbjct: 206 I 200

[Close]

BLAST of Lcy04g000600 vs. NCBI nr
Match: XP_022155371.1 (uncharacterized protein LOC111022515 [Momordica charantia])

HSP 1 Score: 79.3 bits (194), Expect = 4.6e-11
Identity = 40/112 (35.71%), Postives = 64/112 (57.14%), Query Frame = 0


Query: 71  LMGMVLGYGPAWSDMDIVYIPRSHHDHWFIVAIDMNRDSPFIFDSMPTYISDEKLVELLE 130
           ++G V  + P+W D+D+VY P    DHW +V IDM +   F++D +P +IS  KL+  + 
Sbjct: 4   VLGHVEDFIPSWVDVDVVYSPLCIRDHWVLVXIDMTQSEIFVYDPLPGHISTSKLMTDIR 63

Query: 131 SMSYTVPSLVRFC-KVNTSKPDLPDDMDLPWQITRLLKKNIQYRSLDCGIFA 182
            +S+T+PSL+  C  ++T+   L       W++        Q  S+DCGIFA
Sbjct: 64  PLSHTIPSLLYACGLMDTTDCKL---KKTSWRVYHPTTDTRQKGSIDCGIFA 112

The following BLAST results are available for this feature:

BLAST of Lcy04g000600 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy04g000600 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DRI2	2.2e-11	35.71	uncharacterized protein LOC111022515 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A6J1DN69	6.1e-09	43.84	uncharacterized protein LOC111022140 OS=Momordica charantia OX=3673 GN=LOC111022...	[more]
A0A5A7TW86	7.9e-09	30.14	MuDRA-like transposase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1...	[more]
A0A5A7TPP5	1.8e-08	30.14	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G...	[more]
A0A5A7UYV8	5.1e-08	32.00	Ulp1-like peptidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold753G...	[more]

BLAST of Lcy04g000600 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038875042.1	3.9e-18	40.17	uncharacterized protein LOC120067568 [Benincasa hispida]	[more]
XP_038874902.1	5.1e-18	39.53	uncharacterized protein LOC120067405 [Benincasa hispida]	[more]
XP_038902498.1	1.4e-15	36.36	uncharacterized protein LOC120089158 [Benincasa hispida]	[more]
XP_038899753.1	1.2e-14	34.71	uncharacterized protein LOC120086987 [Benincasa hispida] >XP_038899754.1 unchara...	[more]
XP_022155371.1	4.6e-11	35.71	uncharacterized protein LOC111022515 [Momordica charantia]	[more]

BLAST of Lcy04g000600 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PFAM	PF02902	Peptidase_C48	coord: 84..181 e-value: 3.3E-8 score: 33.6
IPR003653	Ulp1 protease family, C-terminal catalytic domain	PROSITE	PS50600	ULP_PROTEASE	coord: 1..188 score: 9.031399
None	No IPR available	GENE3D	3.40.395.10	Adenoviral Proteinase; Chain A	coord: 42..185 e-value: 1.2E-8 score: 36.6
IPR038765	Papain-like cysteine peptidase superfamily	SUPERFAMILY	54001	Cysteine proteinases	coord: 74..181

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy04g000600.1	Lcy04g000600.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity