Lcy04g000430 (gene) Sponge gourd (P93075) v1

Overview
NameLcy04g000430
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionNB-ARC domain-containing protein
LocationChr04: 1411010 .. 1411366 (-)
RNA-Seq ExpressionLcy04g000430
SyntenyLcy04g000430
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTCTTGTTCAAATAACACAGTAGAAGATTGTAGAGGAATGAGTTGTATATTTGGTGGAGATATGGATGAGGAAGAAAACCACAGCAGGCCGCATGATGAAATTGCTTTCACCAGATTGAGTTATATGCATATTAGCAAGTTACCAAGAGTAGAGAGCTTTTACGTTTACCCTGGAAAATGCAAACTTGCGTTCCCATGCTTGGAGGAGTTGGTGGTAGATGAATGCCCAACAATGAAGATGTTTTCTCATGGACCTCTAACCACACCTAAGTTGAAGCTTTTGGAGAGAGATGGAAGTAAAGTCCAGCTGCCTCCATCAAATCATCATATAAATCACATTTTTTCTCTACTTTGA

mRNA sequence

ATGTCTTGTTCAAATAACACAGTAGAAGATTGTAGAGGAATGAGTTGTATATTTGGTGGAGATATGGATGAGGAAGAAAACCACAGCAGGCCGCATGATGAAATTGCTTTCACCAGATTGAGTTATATGCATATTAGCAAGTTACCAAGAGTAGAGAGCTTTTACGTTTACCCTGGAAAATGCAAACTTGCGTTCCCATGCTTGGAGGAGTTGGTGGTAGATGAATGCCCAACAATGAAGATGTTTTCTCATGGACCTCTAACCACACCTAAGTTGAAGCTTTTGGAGAGAGATGGAAGTAAAGTCCAGCTGCCTCCATCAAATCATCATATAAATCACATTTTTTCTCTACTTTGA

Coding sequence (CDS)

ATGTCTTGTTCAAATAACACAGTAGAAGATTGTAGAGGAATGAGTTGTATATTTGGTGGAGATATGGATGAGGAAGAAAACCACAGCAGGCCGCATGATGAAATTGCTTTCACCAGATTGAGTTATATGCATATTAGCAAGTTACCAAGAGTAGAGAGCTTTTACGTTTACCCTGGAAAATGCAAACTTGCGTTCCCATGCTTGGAGGAGTTGGTGGTAGATGAATGCCCAACAATGAAGATGTTTTCTCATGGACCTCTAACCACACCTAAGTTGAAGCTTTTGGAGAGAGATGGAAGTAAAGTCCAGCTGCCTCCATCAAATCATCATATAAATCACATTTTTTCTCTACTTTGA

Protein sequence

MSCSNNTVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPCLEELVVDECPTMKMFSHGPLTTPKLKLLERDGSKVQLPPSNHHINHIFSLL
Homology
BLAST of Lcy04g000430 vs. ExPASy TrEMBL
Match: A0A0A0LTN4 (NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 5.8e-11
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1    MSCSNNTVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGK 60
            ++ S+  V  C+GM C+   ++D+ EN     + I F +LS + +  LPR++SF  Y GK
Sbjct: 1061 VNLSSIKVSYCKGMRCMV--EVDQAEN----DEIITFKKLSTLELDYLPRLDSF--YSGK 1120

Query: 61   CKLAFPCLEELVVDECPTMKMFSHGPLTTPKLKLL 96
            C L FPCLE LV+  CP MK FS+G +  P+L+ L
Sbjct: 1121 CMLEFPCLESLVIKRCPEMKTFSYGVIIAPRLQTL 1147

BLAST of Lcy04g000430 vs. ExPASy TrEMBL
Match: A0A1S3CHN4 (disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC103501064 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8    VEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPC 67
            V  C+ M C+  GD +E +      + I F RLS + +  LPR++SF  + GKC L FPC
Sbjct: 1127 VSYCKRMRCMVEGDQEEND------EIIVFKRLSRLELDYLPRLDSF--HSGKCMLEFPC 1186

Query: 68   LEELVVDECPTMKMFSHGPLTTPKL 93
            LE LV+  CP MK FS+G +  P+L
Sbjct: 1187 LESLVIKRCPEMKTFSYGVIIAPRL 1203

BLAST of Lcy04g000430 vs. ExPASy TrEMBL
Match: A0A067D5L7 (Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0385762mg PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 7   TVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFP 66
           T++ C  ++ I   + DE +N++   DEI F+ L  +++S L  + SF      C   FP
Sbjct: 98  TIKVCVMITEIVADEDDEGDNYA-AQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFP 157

Query: 67  CLEELVVDECPTMKMFSHGPLTTPKLKLLE 97
            LE LVV+ CP MK+FS G L+TPKL+ ++
Sbjct: 158 SLERLVVNRCPNMKIFSEGELSTPKLQKVQ 186

BLAST of Lcy04g000430 vs. ExPASy TrEMBL
Match: A0A2H5QR03 (NB-ARC domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_253590 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 35/90 (38.89%), Postives = 54/90 (60.00%), Query Frame = 0

Query: 7   TVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFP 66
           T++ C  ++ I   + DE +N++   DEI F+ L  +++S L  + SF      C   FP
Sbjct: 871 TIKVCVMITEIVADEDDEGDNYA-AQDEIVFSELKELNLSNLQSLTSFSCSGNNCAFKFP 930

Query: 67  CLEELVVDECPTMKMFSHGPLTTPKLKLLE 97
            LE LVV+ CP MK+FS G L+TPKL+ ++
Sbjct: 931 SLERLVVNRCPNMKIFSEGELSTPKLQKVQ 959

BLAST of Lcy04g000430 vs. ExPASy TrEMBL
Match: A0A1S3CU02 (probable disease resistance protein At1g12280 OS=Cucumis melo OX=3656 GN=LOC103504526 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 1.6e-08
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 0

Query: 7   TVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFP 66
           TV++C+ MS +  G   EE+ +    + I F  L  + I+    + SFY   G+C + FP
Sbjct: 181 TVKECKRMSSVIEGGSTEEDGND---EIIVFNNLRNLSITSCSNITSFYC--GRCIIKFP 240

Query: 67  CLEELVVDECPTMKMFSHGPLTTPKLK 94
           CLE++ + ECP MK+FS G ++TP LK
Sbjct: 241 CLEDVYIIECPEMKVFSLGTVSTPDLK 262

BLAST of Lcy04g000430 vs. NCBI nr
Match: XP_038890209.1 (probable disease resistance protein At4g27220 [Benincasa hispida])

HSP 1 Score: 85.1 bits (209), Expect = 4.4e-13
Identity = 44/108 (40.74%), Postives = 68/108 (62.96%), Query Frame = 0

Query: 8    VEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPC 67
            + +C+GMS I      EE       DEI F++L  + +  LPR+ESFY   GKC +  PC
Sbjct: 1213 ISECQGMSSILAKGEGEEGK-----DEIVFSKLVELKVDDLPRLESFYF--GKCTIKLPC 1272

Query: 68   LEELVVDECPTMKMFSHGPLTTPKLKLLE-RDGSKVQLPPSNHHINHI 115
            L++L++++CP +K+FSHG ++TP+L+ L+ R   KVQ+    H +N I
Sbjct: 1273 LKKLIINKCPEVKLFSHGIISTPELQYLKIRQHDKVQI-SLKHDLNFI 1312

BLAST of Lcy04g000430 vs. NCBI nr
Match: XP_011650062.1 (probable disease resistance protein At5g63020 [Cucumis sativus] >KAE8652346.1 hypothetical protein Csa_022345 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 40/95 (42.11%), Postives = 59/95 (62.11%), Query Frame = 0

Query: 1    MSCSNNTVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGK 60
            ++ S+  V  C+GM C+   ++D+ EN     + I F +LS + +  LPR++SF  Y GK
Sbjct: 1119 VNLSSIKVSYCKGMRCMV--EVDQAEN----DEIITFKKLSTLELDYLPRLDSF--YSGK 1178

Query: 61   CKLAFPCLEELVVDECPTMKMFSHGPLTTPKLKLL 96
            C L FPCLE LV+  CP MK FS+G +  P+L+ L
Sbjct: 1179 CMLEFPCLESLVIKRCPEMKTFSYGVIIAPRLQTL 1205

BLAST of Lcy04g000430 vs. NCBI nr
Match: XP_038888954.1 (uncharacterized protein LOC120078722 [Benincasa hispida])

HSP 1 Score: 77.0 bits (188), Expect = 1.2e-10
Identity = 44/108 (40.74%), Postives = 62/108 (57.41%), Query Frame = 0

Query: 7   TVEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFP 66
           ++ +C  MSCI   D+ EEE  SR  +EI F RL Y+ +  LPR+  F    GKC L F 
Sbjct: 200 SITNCTEMSCIV--DVAEEEEESR-EEEIVFNRLEYLELYNLPRLTCFCF--GKCLLKFF 259

Query: 67  CLEELVVDECPTMKMFSHGPLTTPKLKLLERDGSKVQLPPSNHHINHI 115
           CL+ L + +CP MK FS+G ++ PKL  +  +  K+    + H IN I
Sbjct: 260 CLKILDIKKCPEMKTFSYGKISAPKLLFMSMEREKLS---TTHGINAI 299

BLAST of Lcy04g000430 vs. NCBI nr
Match: XP_008462777.1 (PREDICTED: disease resistance protein At4g27190-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 4.5e-10
Identity = 37/85 (43.53%), Postives = 51/85 (60.00%), Query Frame = 0

Query: 8    VEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPC 67
            V  C+ M C+  GD +E +      + I F RLS + +  LPR++SF  + GKC L FPC
Sbjct: 1127 VSYCKRMRCMVEGDQEEND------EIIVFKRLSRLELDYLPRLDSF--HSGKCMLEFPC 1186

Query: 68   LEELVVDECPTMKMFSHGPLTTPKL 93
            LE LV+  CP MK FS+G +  P+L
Sbjct: 1187 LESLVIKRCPEMKTFSYGVIIAPRL 1203

BLAST of Lcy04g000430 vs. NCBI nr
Match: XP_038902150.1 (disease resistance protein At4g27190-like [Benincasa hispida])

HSP 1 Score: 72.0 bits (175), Expect = 3.8e-09
Identity = 39/105 (37.14%), Postives = 59/105 (56.19%), Query Frame = 0

Query: 8    VEDCRGMSCIFGGDMDEEENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPC 67
            V  C GMSCI      +EEN     + + F +L  +    LPR++SF  Y GKC L FP 
Sbjct: 1125 VSYCEGMSCIVEA---KEEN----DESVIFKKLGKLEFDCLPRLDSF--YSGKCMLEFPS 1184

Query: 68   LEELVVDECPTMKMFSHGPLTTPKLKLLERDGSKVQLPPSNHHIN 113
            LE LV+  CP MK FS G + TP+L+ +  + ++ ++  + + +N
Sbjct: 1185 LESLVIKRCPKMKTFSLGVIMTPELQSMWVEDTEFEVSSTTNSVN 1220

BLAST of Lcy04g000430 vs. TAIR 10
Match: AT4G10780.1 (LRR and NB-ARC domains-containing disease resistance protein )

HSP 1 Score: 43.9 bits (102), Expect = 1.0e-04
Identity = 20/56 (35.71%), Postives = 31/56 (55.36%), Query Frame = 0

Query: 25  EENHSRPHDEIAFTRLSYMHISKLPRVESFYVYPGKCKLAFPCLEELVVDECPTMK 81
           EE   + H  I F +L  +H+S LP ++S Y       L+FPCL  + V+ CP ++
Sbjct: 791 EEEQQQLHKIIPFQKLQILHLSSLPELKSIY----WISLSFPCLSGIYVERCPKLR 842

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LTN45.8e-1142.11NB-ARC domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_2G433370 PE=4... [more]
A0A1S3CHN42.2e-1043.53disease resistance protein At4g27190-like OS=Cucumis melo OX=3656 GN=LOC10350106... [more]
A0A067D5L71.6e-0838.89Uncharacterized protein (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g0385762... [more]
A0A2H5QR031.6e-0838.89NB-ARC domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_253590 PE=4 S... [more]
A0A1S3CU021.6e-0839.08probable disease resistance protein At1g12280 OS=Cucumis melo OX=3656 GN=LOC1035... [more]
Match NameE-valueIdentityDescription
XP_038890209.14.4e-1340.74probable disease resistance protein At4g27220 [Benincasa hispida][more]
XP_011650062.11.2e-1042.11probable disease resistance protein At5g63020 [Cucumis sativus] >KAE8652346.1 hy... [more]
XP_038888954.11.2e-1040.74uncharacterized protein LOC120078722 [Benincasa hispida][more]
XP_008462777.14.5e-1043.53PREDICTED: disease resistance protein At4g27190-like [Cucumis melo][more]
XP_038902150.13.8e-0937.14disease resistance protein At4g27190-like [Benincasa hispida][more]
Match NameE-valueIdentityDescription
AT4G10780.11.0e-0435.71LRR and NB-ARC domains-containing disease resistance protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33463:SF100RPP4C3coord: 8..93
NoneNo IPR availablePANTHERPTHR33463FAMILY NOT NAMEDcoord: 8..93

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy04g000430.1Lcy04g000430.1mRNA