Lcy03g020400 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g020400
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Protein of unknown function (DUF 3339)
Location	Chr03: 53755946 .. 53756155 (+)
RNA-Seq Expression	Lcy03g020400
Synteny	Lcy03g020400

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGATTGGGGGCCGGTCATCATAGCGGTGGTTCTCTTCGTGCTGCTGAGCCCAGGGCTGCTGTTTCAGATCCCGGCCAGAGGAAGGGTCGTCGAATTCGGGAACATGCAAACCAGTGGGGCTTCCATTTTAGTCCACGCCGTCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTTCACATCTACACTGGCTAA

mRNA sequence

ATGGCAGATTGGGGGCCGGTCATCATAGCGGTGGTTCTCTTCGTGCTGCTGAGCCCAGGGCTGCTGTTTCAGATCCCGGCCAGAGGAAGGGTCGTCGAATTCGGGAACATGCAAACCAGTGGGGCTTCCATTTTAGTCCACGCCGTCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTTCACATCTACACTGGCTAA

Coding sequence (CDS)

ATGGCAGATTGGGGGCCGGTCATCATAGCGGTGGTTCTCTTCGTGCTGCTGAGCCCAGGGCTGCTGTTTCAGATCCCGGCCAGAGGAAGGGTCGTCGAATTCGGGAACATGCAAACCAGTGGGGCTTCCATTTTAGTCCACGCCGTCATCTACTTCGGCCTCATCACCATCTTCCTCGTCGCCATCGGCGTTCACATCTACACTGGCTAA

Protein sequence

MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLVAIGVHIYTG

Homology

[Close]

BLAST of Lcy03g020400 vs. ExPASy TrEMBL
Match: A0A6J1JDA3 (uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.8e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHA+IYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. ExPASy TrEMBL
Match: A0A6J1E5M1 (uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC111429708 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 8.8e-28
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
           MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHA+IYFGLITIFLV
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of Lcy03g020400 vs. ExPASy TrEMBL
Match: A0A5A7URK5 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold350G00460 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. ExPASy TrEMBL
Match: A0A0A0LNK0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. ExPASy TrEMBL
Match: A0A1S3CLF1 (uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 2.6e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. NCBI nr
Match: XP_022921425.1 (uncharacterized protein LOC111429708 [Cucurbita moschata])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1   MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
           MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHA+IYFGLITIFLV
Sbjct: 76  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 135

Query: 61  AIGVHIYTG 70
           AIGVHIYTG
Sbjct: 136 AIGVHIYTG 144

[Close]

BLAST of Lcy03g020400 vs. NCBI nr
Match: XP_022987136.1 (uncharacterized protein LOC111484778 [Cucurbita maxima])

HSP 1 Score: 132.1 bits (331), Expect = 1.8e-27
Identity = 68/69 (98.55%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHA+IYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. NCBI nr
Match: XP_023515465.1 (uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 131.7 bits (330), Expect = 2.4e-27
Identity = 67/69 (97.10%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHA+IYFGLITIFLV
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAIIYFGLITIFLV 60

Query: 61 AIGVHIYTG 70
          AIGVH+YTG
Sbjct: 61 AIGVHVYTG 69

[Close]

BLAST of Lcy03g020400 vs. NCBI nr
Match: XP_004138041.1 (uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED: uncharacterized protein LOC103502312 [Cucumis melo] >KAA0057764.1 putative transmembrane protein [Cucumis melo var. makuwa] >KGN63475.1 hypothetical protein Csa_013057 [Cucumis sativus] >TYJ98445.1 putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.6 bits (327), Expect = 5.3e-27
Identity = 66/69 (95.65%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVIIAVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIIAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. NCBI nr
Match: XP_040989914.1 (uncharacterized protein LOC121237293 isoform X4 [Juglans microcarpa x Juglans regia])

HSP 1 Score: 130.2 bits (326), Expect = 6.9e-27
Identity = 65/69 (94.20%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPVI+AVVLFVLLSPGLLFQIPA+GRVVEFGNMQTSGASILVHA+IYFGLITIFL+
Sbjct: 1  MADWGPVIVAVVLFVLLSPGLLFQIPAKGRVVEFGNMQTSGASILVHAIIYFGLITIFLI 60

Query: 61 AIGVHIYTG 70
          AIGVHIYTG
Sbjct: 61 AIGVHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. TAIR 10
Match: AT3G48660.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 120.2 bits (300), Expect = 6.7e-28
Identity = 58/69 (84.06%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPV++AV+LFVLL+PGLLFQIPARGRVVEFGNMQTSGASILVH +I+FGLITIF +
Sbjct: 1  MADWGPVVVAVILFVLLTPGLLFQIPARGRVVEFGNMQTSGASILVHTIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI +HIYTG
Sbjct: 61 AIRLHIYTG 69

[Close]

BLAST of Lcy03g020400 vs. TAIR 10
Match: AT5G63500.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 119.4 bits (298), Expect = 1.1e-27
Identity = 59/69 (85.51%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLV 60
          MADWGPV+IAV+LFV+LSPGLLFQIPA GRVVEFGNMQTSGASILVHA+I+FGLITIF +
Sbjct: 1  MADWGPVLIAVILFVVLSPGLLFQIPAGGRVVEFGNMQTSGASILVHAIIFFGLITIFTI 60

Query: 61 AIGVHIYTG 70
          AI VHIY+G
Sbjct: 61 AINVHIYSG 69

[Close]

BLAST of Lcy03g020400 vs. TAIR 10
Match: AT5G40980.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 100.5 bits (249), Expect = 5.5e-22
Identity = 48/66 (72.73%), Postives = 59/66 (89.39%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLVA 61
          ADWGPVI+AV LF+LLSPGLLFQ+PAR RV+EFGNM TSG SILVHA+IYF ++TI ++A
Sbjct: 3  ADWGPVIVAVALFILLSPGLLFQLPARTRVMEFGNMSTSGISILVHAIIYFCILTILIIA 62

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 63 IQIHIH 68

[Close]

BLAST of Lcy03g020400 vs. TAIR 10
Match: AT3G27027.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 95.9 bits (237), Expect = 1.4e-20
Identity = 47/65 (72.31%), Postives = 57/65 (87.69%), Query Frame = 0


Query: 3  DWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLVAI 62
          DWGPVI+AV LF+LLSPGLLFQ+PAR RVVEFGNM TSG +ILVHA IYF ++TI ++AI
Sbjct: 4  DWGPVIVAVSLFILLSPGLLFQLPARTRVVEFGNMTTSGIAILVHAFIYFCILTILVIAI 63

Query: 63 GVHIY 68
           +HI+
Sbjct: 64 QIHIH 68

[Close]

BLAST of Lcy03g020400 vs. TAIR 10
Match: AT3G01940.1 (Protein of unknown function (DUF 3339) )

HSP 1 Score: 95.1 bits (235), Expect = 2.3e-20
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 0


Query: 2  ADWGPVIIAVVLFVLLSPGLLFQIPARGRVVEFGNMQTSGASILVHAVIYFGLITIFLVA 61
          ADWGPV +AVVLFV+LSPGLLFQ+PAR RV+E GNM TSG SILVHA+++F +ITI ++A
Sbjct: 4  ADWGPVAVAVVLFVVLSPGLLFQLPARRRVLECGNMTTSGISILVHAILFFAIITILVIA 63

Query: 62 IGVHIY 68
          I +HI+
Sbjct: 64 IQIHIH 69

The following BLAST results are available for this feature:

BLAST of Lcy03g020400 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g020400 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JDA3	8.8e-28	98.55	uncharacterized protein LOC111484778 OS=Cucurbita maxima OX=3661 GN=LOC111484778...	[more]
A0A6J1E5M1	8.8e-28	98.55	uncharacterized protein LOC111429708 OS=Cucurbita moschata OX=3662 GN=LOC1114297...	[more]
A0A5A7URK5	2.6e-27	95.65	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s...	[more]
A0A0A0LNK0	2.6e-27	95.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G001470 PE=4 SV=1	[more]
A0A1S3CLF1	2.6e-27	95.65	uncharacterized protein LOC103502312 OS=Cucumis melo OX=3656 GN=LOC103502312 PE=...	[more]

BLAST of Lcy03g020400 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022921425.1	1.8e-27	98.55	uncharacterized protein LOC111429708 [Cucurbita moschata]	[more]
XP_022987136.1	1.8e-27	98.55	uncharacterized protein LOC111484778 [Cucurbita maxima]	[more]
XP_023515465.1	2.4e-27	97.10	uncharacterized protein LOC111779615 [Cucurbita pepo subsp. pepo]	[more]
XP_004138041.1	5.3e-27	95.65	uncharacterized protein LOC101212373 [Cucumis sativus] >XP_008464420.1 PREDICTED...	[more]
XP_040989914.1	6.9e-27	94.20	uncharacterized protein LOC121237293 isoform X4 [Juglans microcarpa x Juglans re...	[more]

BLAST of Lcy03g020400 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G48660.1	6.7e-28	84.06	Protein of unknown function (DUF 3339)	[more]
AT5G63500.1	1.1e-27	85.51	Protein of unknown function (DUF 3339)	[more]
AT5G40980.1	5.5e-22	72.73	Protein of unknown function (DUF 3339)	[more]
AT3G27027.1	1.4e-20	72.31	Protein of unknown function (DUF 3339)	[more]
AT3G01940.1	2.3e-20	69.70	Protein of unknown function (DUF 3339)	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR021775	Protein of unknown function DUF3339	PFAM	PF11820	DUF3339	coord: 1..67 e-value: 4.0E-37 score: 126.2
IPR021775	Protein of unknown function DUF3339	PANTHER	PTHR33128	OS05G0103400 PROTEIN	coord: 1..69
None	No IPR available	PANTHER	PTHR33128:SF40	SUBFAMILY NOT NAMED	coord: 1..69

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g020400.1	Lcy03g020400.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane