Lcy03g019950 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019950
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLeucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1
LocationChr03: 53320741 .. 53321148 (-)
RNA-Seq ExpressionLcy03g019950
SyntenyLcy03g019950
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTTCAAGAAATCCAAACTCCCCGAGAACTTATTGGACGAAAGATCGATGACTCGAAGGCGAATCAACGAGGACAATCCAGATGGAACTTTGCCAGAAAACTGGTTGTTTTGGAGATCGAGAATTTCCAGTTTCCGGCAGTCAACAATTTGAGCTGGTACTTGGTCAACGAGGTGATTATTAGAAAACGTAAGCTCTTTCAACTCCGTGAGCCGCCCAATGGCTGGAGAAAGAGAACCGGCAAGTCCTTTGGACTTGAAAATGAGCCTGGTGATCCTCAAAACATAAGTGCCGTTGTCGGAGAGGCGCCGCTCGCAGAAGACACCGGCGAGGTCGCATGGGGAGGAGGAGAGTTGACCGCCAATGCCCAAGTCATTCTTGATGATGGAAAAGGCTCTGAGATCTGA

mRNA sequence

ATGCTTCAAGAAATCCAAACTCCCCGAGAACTTATTGGACGAAAGATCGATGACTCGAAGGCGAATCAACGAGGACAATCCAGATGGAACTTTGCCAGAAAACTGGTTGTTTTGGAGATCGAGAATTTCCAGTTTCCGGCAGTCAACAATTTGAGCTGGTACTTGGTCAACGAGGTGATTATTAGAAAACGTAAGCTCTTTCAACTCCGTGAGCCGCCCAATGGCTGGAGAAAGAGAACCGGCAAGTCCTTTGGACTTGAAAATGAGCCTGGTGATCCTCAAAACATAAGTGCCGTTGTCGGAGAGGCGCCGCTCGCAGAAGACACCGGCGAGGTCGCATGGGGAGGAGGAGAGTTGACCGCCAATGCCCAAGTCATTCTTGATGATGGAAAAGGCTCTGAGATCTGA

Coding sequence (CDS)

ATGCTTCAAGAAATCCAAACTCCCCGAGAACTTATTGGACGAAAGATCGATGACTCGAAGGCGAATCAACGAGGACAATCCAGATGGAACTTTGCCAGAAAACTGGTTGTTTTGGAGATCGAGAATTTCCAGTTTCCGGCAGTCAACAATTTGAGCTGGTACTTGGTCAACGAGGTGATTATTAGAAAACGTAAGCTCTTTCAACTCCGTGAGCCGCCCAATGGCTGGAGAAAGAGAACCGGCAAGTCCTTTGGACTTGAAAATGAGCCTGGTGATCCTCAAAACATAAGTGCCGTTGTCGGAGAGGCGCCGCTCGCAGAAGACACCGGCGAGGTCGCATGGGGAGGAGGAGAGTTGACCGCCAATGCCCAAGTCATTCTTGATGATGGAAAAGGCTCTGAGATCTGA

Protein sequence

MLQEIQTPRELIGRKIDDSKANQRGQSRWNFARKLVVLEIENFQFPAVNNLSWYLVNEVIIRKRKLFQLREPPNGWRKRTGKSFGLENEPGDPQNISAVVGEAPLAEDTGEVAWGGGELTANAQVILDDGKGSEI
Homology
[Close]
BLAST of Lcy03g019950 vs. ExPASy TrEMBL
Match: A0A4Y1RJ38 (Leucine-rich repeat protein kinase family protein OS=Prunus dulcis OX=3755 GN=Prudu_014683 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.7e-19
Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 0 

Query: 2   LQEIQTPRELIGRKIDDSKANQRGQSRWNFARKLVVLEIENFQFPAVNNLSWYLVNEVII 61
           L+E Q P +L+GR+++DSKAN+ GQ  WNF  +LVV E+EN +FPAVN+L   LVN+ ++
Sbjct: 456 LEETQVPGKLVGREVEDSKANELGQLGWNFPGELVVSEVENLKFPAVNDLRRDLVNKAVV 515

Query: 62  RKRKLFQLREPPNGWRKRTGKSFGLENEPGDPQNISAVV 101
            K  LF+L EPPN  R++  K  GL+++PGD +++S VV
Sbjct: 516 CKSDLFELGEPPNCRRQKPVKPLGLKDQPGDFEDVSVVV 554

[Close]
BLAST of Lcy03g019950 vs. ExPASy TrEMBL
Match: A0A5N5G752 (Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_012400 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-12
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 1  MLQEIQTPRELIGRKIDDSKANQRGQSRWNFARKLVVLEIENFQFPAVNNLSWYLVNEVI 60
          ML+E Q PR+L+ RK++ SKAN+  Q+  NF    VV E+EN + PAVNNL W  VNEV+
Sbjct: 1  MLEEAQIPRKLVRRKVEGSKANEVRQTGRNFPGIPVVSEVENLKLPAVNNLRWDFVNEVV 60

Query: 61 IRKRKLFQLREPP 74
          + KR LF+L EPP
Sbjct: 61 VNKRDLFELGEPP 73

[Close]
BLAST of Lcy03g019950 vs. NCBI nr
Match: BBH03733.1 (Leucine-rich repeat protein kinase family protein [Prunus dulcis])

HSP 1 Score: 105.5 bits (262), Expect = 3.6e-19
Identity = 50/99 (50.51%), Postives = 73/99 (73.74%), Query Frame = 0 

Query: 2   LQEIQTPRELIGRKIDDSKANQRGQSRWNFARKLVVLEIENFQFPAVNNLSWYLVNEVII 61
           L+E Q P +L+GR+++DSKAN+ GQ  WNF  +LVV E+EN +FPAVN+L   LVN+ ++
Sbjct: 456 LEETQVPGKLVGREVEDSKANELGQLGWNFPGELVVSEVENLKFPAVNDLRRDLVNKAVV 515

Query: 62  RKRKLFQLREPPNGWRKRTGKSFGLENEPGDPQNISAVV 101
            K  LF+L EPPN  R++  K  GL+++PGD +++S VV
Sbjct: 516 CKSDLFELGEPPNCRRQKPVKPLGLKDQPGDFEDVSVVV 554

[Close]
BLAST of Lcy03g019950 vs. NCBI nr
Match: KAB2609232.1 (leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR1 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 82.8 bits (203), Expect = 2.5e-12
Identity = 40/73 (54.79%), Postives = 52/73 (71.23%), Query Frame = 0 

Query: 1  MLQEIQTPRELIGRKIDDSKANQRGQSRWNFARKLVVLEIENFQFPAVNNLSWYLVNEVI 60
          ML+E Q PR+L+ RK++ SKAN+  Q+  NF    VV E+EN + PAVNNL W  VNEV+
Sbjct: 1  MLEEAQIPRKLVRRKVEGSKANEVRQTGRNFPGIPVVSEVENLKLPAVNNLRWDFVNEVV 60

Query: 61 IRKRKLFQLREPP 74
          + KR LF+L EPP
Sbjct: 61 VNKRDLFELGEPP 73

The following BLAST results are available for this feature:
BLAST of Lcy03g019950 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g019950 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A4Y1RJ381.7e-1950.51Leucine-rich repeat protein kinase family protein OS=Prunus dulcis OX=3755 GN=Pr... [more]
A0A5N5G7521.2e-1254.79Leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR... [more]
BLAST of Lcy03g019950 vs. NCBI nr
Match NameE-valueIdentityDescription
BBH03733.13.6e-1950.51Leucine-rich repeat protein kinase family protein [Prunus dulcis][more]
KAB2609232.12.5e-1254.79leucine-rich repeat receptor-like serine/threonine/tyrosine-protein kinase SOBIR... [more]
BLAST of Lcy03g019950 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019950.1Lcy03g019950.1mRNA