Lcy03g019650 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g019650
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	FKBP12-interacting protein of 37 kDa-like
Location	Chr03: 53109243 .. 53109794 (+)
RNA-Seq Expression	Lcy03g019650
Synteny	Lcy03g019650

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCGCACGCTCATCTCGACGATGTTAGTTCCTCTTTCTCATTCTCACCGATCGATATGCTTTTTACGCGAGTTTTAGGGGTTTATTTCAAGAAGTTTCTCTCTGATTTCTTCACTCTTTCAGGATGATGATTTTGGAGGCGACTTCACTGGTGCGCACAACAATAGGCATTCAGGTTCATTTTACATTCTCTGCAACGAATCGTTAGTTTGTAATTGGCCTGTGTTCACGGATGTTTATTTTATGCCATGTTTACGAAAATATAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGACGAGGATGATTTCTTTGGCTCCAAAAAGGTATTTCTACACTATATACCTGATTCGCTGGTTTTCGTTTTGTACTTAAATTATTGCTTCGATTTTCACTTAATTTAATGTTCTGTATGATGTTAACTTGCGGTTAACTCTAATTGCTTCATTTTAGGCTAACGCTAAAGTAGAAGAAACTGCTCCGGGTGTAGCGACAGGAATGATTCTGTCTCTTCGTGAGAGGTATTGTATTATTTACGGTGATTGA

mRNA sequence

ATGGCGTCGCACGCTCATCTCGACGATGATGATGATTTTGGAGGCGACTTCACTGGTGCGCACAACAATAGGCATTCAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGACGAGGATGATTTCTTTGGCTCCAAAAAGGCTAACGCTAAAGTAGAAGAAACTGCTCCGGGTGTAGCGACAGGAATGATTCTGTCTCTTCGTGAGAGGTATTGTATTATTTACGGTGATTGA

Coding sequence (CDS)

ATGGCGTCGCACGCTCATCTCGACGATGATGATGATTTTGGAGGCGACTTCACTGGTGCGCACAACAATAGGCATTCAGGAAATAAGAGAGGTTTTGGCGATCTCGAAGATGACGAGGATGATTTCTTTGGCTCCAAAAAGGCTAACGCTAAAGTAGAAGAAACTGCTCCGGGTGTAGCGACAGGAATGATTCTGTCTCTTCGTGAGAGGTATTGTATTATTTACGGTGATTGA

Protein sequence

MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVATGMILSLRERYCIIYGD

Homology

[Close]

BLAST of Lcy03g019650 vs. ExPASy Swiss-Prot
Match: Q9ZSZ8 (FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana OX=3702 GN=FIP37 PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 8.1e-11
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 10 DDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVATGMILSLR 69
          DDDFGGD + A+  R SGN+R FGDLEDDEDD FGS          APGV TGMILSLR
Sbjct: 7  DDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGS-------TTVAPGVRTGMILSLR 58

[Close]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL
Match: A0A6J1JJ49 (FKBP12-interacting protein of 37 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC111485065 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL
Match: A0A6J1E4W7 (FKBP12-interacting protein of 37 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC111429961 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.0e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL
Match: A0A6J1C1L0 (FKBP12-interacting protein of 37 kDa OS=Momordica charantia OX=3673 GN=LOC111007142 PE=3 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 5.8e-28
Identity = 64/69 (92.75%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG ++NRHSGNKRGFGDLEDDEDD+FGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTNSNRHSGNKRGFGDLEDDEDDYFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL
Match: A0A6J1HW30 (FKBP12-interacting protein of 37 kDa-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111468054 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASH HL++DDDFGGDFTG HNNRHSGNKRGFGDLED+EDD FGSKKANAKVEETAPGVA
Sbjct: 1  MASHGHLEEDDDFGGDFTGTHNNRHSGNKRGFGDLEDEEDDLFGSKKANAKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL
Match: A0A6J1HZD7 (FKBP12-interacting protein of 37 kDa-like isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111468054 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.7e-27
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASH HL++DDDFGGDFTG HNNRHSGNKRGFGDLED+EDD FGSKKANAKVEETAPGVA
Sbjct: 1  MASHGHLEEDDDFGGDFTGTHNNRHSGNKRGFGDLEDEEDDLFGSKKANAKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. NCBI nr
Match: KAG6589432.1 (FKBP12-interacting protein of 37 kDa, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. NCBI nr
Match: XP_022921823.1 (FKBP12-interacting protein of 37 kDa-like [Cucurbita moschata])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. NCBI nr
Match: XP_022987529.1 (FKBP12-interacting protein of 37 kDa-like [Cucurbita maxima])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. NCBI nr
Match: KAG7023112.1 (FKBP12-interacting protein of 37 kDa [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. NCBI nr
Match: XP_023516421.1 (FKBP12-interacting protein of 37 kDa [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 66/69 (95.65%), Postives = 68/69 (98.55%), Query Frame = 0


Query: 1  MASHAHLDDDDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVA 60
          MASHAHLDDDDDFGGDFTG H+NRHSGNKRGFGDLEDDEDDFFGSKKAN+KVEETAPGVA
Sbjct: 1  MASHAHLDDDDDFGGDFTGTHSNRHSGNKRGFGDLEDDEDDFFGSKKANSKVEETAPGVA 60

Query: 61 TGMILSLRE 70
          TGMILSLRE
Sbjct: 61 TGMILSLRE 69

[Close]

BLAST of Lcy03g019650 vs. TAIR 10
Match: AT3G54170.1 (FKBP12 interacting protein 37 )

HSP 1 Score: 67.4 bits (163), Expect = 5.7e-12
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 10 DDDFGGDFTGAHNNRHSGNKRGFGDLEDDEDDFFGSKKANAKVEETAPGVATGMILSLR 69
          DDDFGGD + A+  R SGN+R FGDLEDDEDD FGS          APGV TGMILSLR
Sbjct: 7  DDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGS-------TTVAPGVRTGMILSLR 58

The following BLAST results are available for this feature:

BLAST of Lcy03g019650 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZSZ8	8.1e-11	64.41	FKBP12-interacting protein of 37 kDa OS=Arabidopsis thaliana OX=3702 GN=FIP37 PE...	[more]

BLAST of Lcy03g019650 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JJ49	4.0e-29	95.65	FKBP12-interacting protein of 37 kDa-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1E4W7	4.0e-29	95.65	FKBP12-interacting protein of 37 kDa-like OS=Cucurbita moschata OX=3662 GN=LOC11...	[more]
A0A6J1C1L0	5.8e-28	92.75	FKBP12-interacting protein of 37 kDa OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1HW30	1.7e-27	91.30	FKBP12-interacting protein of 37 kDa-like isoform X1 OS=Cucurbita maxima OX=3661...	[more]
A0A6J1HZD7	1.7e-27	91.30	FKBP12-interacting protein of 37 kDa-like isoform X2 OS=Cucurbita maxima OX=3661...	[more]

BLAST of Lcy03g019650 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6589432.1	8.3e-29	95.65	FKBP12-interacting protein of 37 kDa, partial [Cucurbita argyrosperma subsp. sor...	[more]
XP_022921823.1	8.3e-29	95.65	FKBP12-interacting protein of 37 kDa-like [Cucurbita moschata]	[more]
XP_022987529.1	8.3e-29	95.65	FKBP12-interacting protein of 37 kDa-like [Cucurbita maxima]	[more]
KAG7023112.1	8.3e-29	95.65	FKBP12-interacting protein of 37 kDa [Cucurbita argyrosperma subsp. argyrosperma...	[more]
XP_023516421.1	8.3e-29	95.65	FKBP12-interacting protein of 37 kDa [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy03g019650 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54170.1	5.7e-12	64.41	FKBP12 interacting protein 37	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	PANTHER	PTHR15217:SF2	PROTEIN OF 37 KDA-LIKE PROTEIN, PUTATIVE-RELATED	coord: 1..70
IPR033757	Pre-mRNA-splicing regulator WTAP	PANTHER	PTHR15217	WILMS' TUMOR 1-ASSOCIATING PROTEIN	coord: 1..70

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g019650.1	Lcy03g019650.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010073	meristem maintenance
biological_process	GO:0080009	mRNA methylation
biological_process	GO:0000381	regulation of alternative mRNA splicing, via spliceosome
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043621	protein self-association