Lcy03g019560 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g019560
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr03: 53020154 .. 53022075 (-)
RNA-Seq Expression	Lcy03g019560
Synteny	Lcy03g019560

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTCACGAGTTCCACATATCTCTCCTTCAAGTCTTCTCAATTTTCAAAAGAAATAGCTTGTGACCCAAAAAAAAAAAAACCCTTTTTTATTTTATCTTCTTCTAGTTCTTTCTGACCACCTTAAGGATTCTAAAACTGTCCTAAATTTTGCATCTTTAGCTTTGTTTCTACTCTCTGATCTCTCCTTTTGTCCAAAAATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTATCTTCTTCTTCTTCTTCTTTAATGAGGCTCAAGGTATACAAATTTTGCCATTTCTTTTAGATGGGTTTTGTTTTTGTGTTGTTTTTATTTGCATAAATGGAGAATGATAATAATTGTGGAAGTTTTTTCTGTGTATTGTGAAGGCATTCGCATGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGTGAGTTTTCTTTTAAATTAAAGCGCCAGCCTTTCTTTTTTGGGGGTTTGTAATTTTTTCCTTTCTAAATCTCTAAATCTTGATGGCTCAACATTTAATGCAGGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTGCAAAAATCCGCATGGTAATTCAGGTATGTTGTTTTTAGATGAGGGCGATTTGAAAGGTATGTTTGGTTTAACTTTTCGAAGTGTTTAATTTTGAAAAAAAAAATATCATTTTGACAAAAATTCAAGTGTTCGACAACCACTAAAAATTATTTATTAAAAAAAGATTGAGAAATAAACTATTTTAAAAGAGACACTTGAAAGCAAATTTTTTAAAGTGCGTTTTTAAGTATATAATAACTTGTGTATAAATCTACTTATGAGAAAATGTAGCGTGTTTAAATTCTAAACAATTTTTATACAAAATATTTAAAAGAAAATACATTCTTGAAAAACATTTAAATTAAAAAGTATTTGAAACGGGCCCTAAGTCTTCTTCGATAATCATTTGATTGTGATTGAAAAGTAGAGCTTATAATAACACTATTTTCAACCATCTGTTTCTTTATTTTATTATCTATTTTCTAAAAACATTTTCAAAATCTGAAACAAATTTTGAAAACTTAAAAGAAAATAATTTTGAAAAGCTTATTTTTATTTTTTTACATTTAACTTCTAATAATTCAAATGTATTTTTTGAAAAAGTAAAATAATATACTAAAAATTTGTGTGGAAGTCAACATAACAATTTTTTTTTTTTTTTTTAAAAAATGTTATGGAATAAGCCTAATCTTTCAAATTTGTTGCATTAAATTGTGCCCCAAAAAGTTAATGCAACAACATCATAAAAAACAACCCAAATGGGACATTTCACACTTTATTGTACATCTCATAAGGCATGTCTGAGTTGGGTTTGACATTTATGATGCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACCTCAACAAGGGTTAGTCCCTTATCATCATTTCAACTCATCATTTTTACAAACATATATATAATCTCGCCTTCATTAAATCACCACTAAATCTAAAAACTTAAGTTCAATCTTTCGTTCGTACTCCAAAGCACGACAGATGATTATCGATATTCATTGTGAAGAAAAAAAAATCCTGACTCTGACACTACAGGAATTCAAACACACACGACCTTTTGCTATGATACTGCATCAAAATCACTACGACAAATTTAAATGTCTTATGCATACTAATTTTATGTTTGCAATACAGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGGCTTCAACATTATCCATACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGATCCCAAAAGGAAGAGACAAAGAAGAACCAAACAAGACAAAAACAAGCCAAC

mRNA sequence

ATTCACGAGTTCCACATATCTCTCCTTCAAGTCTTCTCAATTTTCAAAAGAAATAGCTTGTGACCCAAAAAAAAAAAAACCCTTTTTTATTTTATCTTCTTCTAGTTCTTTCTGACCACCTTAAGGATTCTAAAACTGTCCTAAATTTTGCATCTTTAGCTTTGTTTCTACTCTCTGATCTCTCCTTTTGTCCAAAAATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTATCTTCTTCTTCTTCTTCTTTAATGAGGCTCAAGGCATTCGCATGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTGCAAAAATCCGCATGGTAATTCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACCTCAACAAGGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGGCTTCAACATTATCCATACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGATCCCAAAAGGAAGAGACAAAGAAGAACCAAACAAGACAAAAACAAGCCAAC

Coding sequence (CDS)

ATGAGGTCAATTAATGCACAAGCTTCTCTTCTCCTTATCTTCTTCTTCTTCTTCTTTAATGAGGCTCAAGGCATTCGCATGGGGAATTGGATGATGAAGCCAGTTGGGCTGCTCGAGAAAGCACTTGAAGAGAAAAATCTACTGATAGAAGAAGGTTTTAGGAAGATGAATCTCTGCAAAAATCCGCATGGTAATTCAGGAAACAGTAGAAAGCTTCTCACTGCAACCCCTTCCTCAACCTCAACAAGGAGTGTGAAAGAGAAGGGTTTGGGCAATAATAATTCAGAGGCAGTTTCTGAGAATCTTGAGGCAGGGCTTCAACATTATCCATACCTCATAGACATTGCAGAAATGGACTATTCCCCAGCAAAAAGAAAGCCTCCAATACACAACTGA

Protein sequence

MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKMNLCKNPHGNSGNSRKLLTATPSSTSTRSVKEKGLGNNNSEAVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN

Homology

[Close]

BLAST of Lcy03g019560 vs. ExPASy TrEMBL
Match: A0A6J1C2H1 (uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007333 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 5.6e-31
Identity = 88/155 (56.77%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLC 60
           MRS N  ASLLLI F F  N+AQGIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC
Sbjct: 1   MRSTNVLASLLLI-FSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLC 60

Query: 61  KNPHGNSGNSRKLLTATPSSTSTRSV-KEKGLGNN----------------------NSE 120
           +    NSGN RKLLTAT  S+ST S+ +    G N                      NSE
Sbjct: 61  RKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSE 120

Query: 121 AVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           AVSENLEAG +HYP L+DIAEMDYSPAKRKPPIHN
Sbjct: 121 AVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 154

[Close]

BLAST of Lcy03g019560 vs. ExPASy TrEMBL
Match: A0A6J1E3V7 (uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025844 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 83/155 (53.55%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLC 60
           MRS N  ASLLLI F F  N+AQGIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC
Sbjct: 1   MRSTNVLASLLLI-FSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLC 60

Query: 61  KNPHGNSGNSRKLLTATPSSTSTRSV-KEKGLGNN----------------------NSE 120
           +    NSGN RKLLTAT  S+ST S+ +    G N                      NSE
Sbjct: 61  RKGQCNSGNIRKLLTATSPSSSTPSITRNNDEGGNFRRANPISKKEELSVKDKKELDNSE 120

Query: 121 AVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           AVSENLEAG +H P L DIAEMDYS A+ KPPIH+
Sbjct: 121 AVSENLEAGQEHNPDLGDIAEMDYSLARGKPPIHH 154

[Close]

BLAST of Lcy03g019560 vs. ExPASy TrEMBL
Match: A0A6J1C2B2 (uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007293 PE=4 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-25
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 20  NEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLCKNPHGNSGNSRKLLTATPS 79
           ++  GIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC+    NSGN RKLLTAT  
Sbjct: 58  DDEDGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSP 117

Query: 80  STSTRSV-KEKGLGNN----------------------NSEAVSENLEAGLQHYPYLIDI 132
           S+ST S+ +    G N                      NSEAVSENLEAG +HYP L+DI
Sbjct: 118 SSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDI 177

[Close]

BLAST of Lcy03g019560 vs. ExPASy TrEMBL
Match: A0A5A7U792 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold675G00250 PE=4 SV=1)

HSP 1 Score: 112.8 bits (281), Expect = 1.1e-21
Identity = 79/149 (53.02%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 10  LLLIFFFFFFNEAQGIRMGNW-MMKPVGLLEKALEEKNLLIEEGFRKMNLCKNPHGNSGN 69
           LLL+ FFF  N+AQGIR+GN  M+K VG   K LEE+   + EGFRK  +C+N H NSGN
Sbjct: 12  LLLLLFFFLSNQAQGIRLGNGIMIKLVGQPAKTLEEE---VVEGFRKTTICENGHCNSGN 71

Query: 70  SRKLLTAT----PSS--TSTRSVKEKGL--GN------------------NNSEAVSENL 129
           +RKL+T T    PSS   STR+ +E+    GN                   NSEAVS+NL
Sbjct: 72  NRKLMTVTTPPIPSSPTPSTRNNEEENYKKGNPKSSNKEESSSVKKKDDLENSEAVSKNL 131

Query: 130 EAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           EA L     LIDIAEMDYSPAKRKPPIHN
Sbjct: 132 EAALD----LIDIAEMDYSPAKRKPPIHN 153

[Close]

BLAST of Lcy03g019560 vs. ExPASy TrEMBL
Match: A0A6J1EZP7 (uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC111440836 PE=4 SV=1)

HSP 1 Score: 110.9 bits (276), Expect = 4.0e-21
Identity = 75/146 (51.37%), Postives = 89/146 (60.96%), Query Frame = 0


Query: 1   MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKMNLCK 60
           MR I+  ASLLL+  FF F+ +QG+R+GN +MKP+ LL   LEE+  L+EE         
Sbjct: 1   MRPIHVLASLLLM--FFLFDHSQGVRLGNGLMKPL-LLGTPLEEEVPLVEE--------- 60

Query: 61  NPHGNSGNSRKLLTATPSSTSTRSVKEKGLGN------------NNSEAVSENLEAG--- 120
           N H NSG SRKLL  T  S+ T S      GN             +S+AVSENLEAG   
Sbjct: 61  NGHWNSGKSRKLLMETSPSSPTPSTTRNKEGNKKGNQGMKEQDMKSSKAVSENLEAGHEQ 120

Query: 121 LQHYPYLIDIAEMDYSPAKRKPPIHN 132
            QHYP LI+IAEMDYSPA RKPPIHN
Sbjct: 121 QQHYPDLIEIAEMDYSPATRKPPIHN 134

[Close]

BLAST of Lcy03g019560 vs. NCBI nr
Match: XP_022135362.1 (uncharacterized protein LOC111007333 [Momordica charantia])

HSP 1 Score: 143.7 bits (361), Expect = 1.2e-30
Identity = 88/155 (56.77%), Postives = 103/155 (66.45%), Query Frame = 0


Query: 1   MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLC 60
           MRS N  ASLLLI F F  N+AQGIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC
Sbjct: 1   MRSTNVLASLLLI-FSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLC 60

Query: 61  KNPHGNSGNSRKLLTATPSSTSTRSV-KEKGLGNN----------------------NSE 120
           +    NSGN RKLLTAT  S+ST S+ +    G N                      NSE
Sbjct: 61  RKGQCNSGNIRKLLTATSPSSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSE 120

Query: 121 AVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           AVSENLEAG +HYP L+DIAEMDYSPAKRKPPIHN
Sbjct: 121 AVSENLEAGQEHYPDLVDIAEMDYSPAKRKPPIHN 154

[Close]

BLAST of Lcy03g019560 vs. NCBI nr
Match: XP_038876887.1 (uncharacterized protein LOC120069249 [Benincasa hispida])

HSP 1 Score: 138.3 bits (347), Expect = 4.8e-29
Identity = 92/159 (57.86%), Postives = 105/159 (66.04%), Query Frame = 0


Query: 1   MRSIN-AQASLLL----IFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRK 60
           MRS N A++SLLL    +F FF  NEAQGIR GN M+KP+G LEK LEE++ LI EGFRK
Sbjct: 1   MRSNNYARSSLLLVVVVVFIFFLSNEAQGIRFGNGMIKPLGHLEKTLEEESRLIVEGFRK 60

Query: 61  MNLCKNPHGNSGNSRKLLTAT---PSS--TSTRSVKEKGLGN------------------ 120
           + LC+N H NSGN+RKLLTAT   PSS   STR+ +    GN                  
Sbjct: 61  ITLCENGHCNSGNNRKLLTATSPIPSSPTPSTRNNEGNKKGNPMSSSHKEDPSVKRKDNL 120

Query: 121 NNSEAVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
            NSEAVS+NLEA L     LIDIAEMDYSPAKRKPPIHN
Sbjct: 121 ENSEAVSKNLEANLD----LIDIAEMDYSPAKRKPPIHN 155

[Close]

BLAST of Lcy03g019560 vs. NCBI nr
Match: XP_022159421.1 (uncharacterized protein LOC111025844 [Momordica charantia])

HSP 1 Score: 128.3 bits (321), Expect = 5.0e-26
Identity = 83/155 (53.55%), Postives = 99/155 (63.87%), Query Frame = 0


Query: 1   MRSINAQASLLLIFFFFFFNEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLC 60
           MRS N  ASLLLI F F  N+AQGIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC
Sbjct: 1   MRSTNVLASLLLI-FSFLSNQAQGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLC 60

Query: 61  KNPHGNSGNSRKLLTATPSSTSTRSV-KEKGLGNN----------------------NSE 120
           +    NSGN RKLLTAT  S+ST S+ +    G N                      NSE
Sbjct: 61  RKGQCNSGNIRKLLTATSPSSSTPSITRNNDEGGNFRRANPISKKEELSVKDKKELDNSE 120

Query: 121 AVSENLEAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           AVSENLEAG +H P L DIAEMDYS A+ KPPIH+
Sbjct: 121 AVSENLEAGQEHNPDLGDIAEMDYSLARGKPPIHH 154

[Close]

BLAST of Lcy03g019560 vs. NCBI nr
Match: XP_022135297.1 (uncharacterized protein LOC111007293 [Momordica charantia])

HSP 1 Score: 125.2 bits (313), Expect = 4.2e-25
Identity = 73/136 (53.68%), Postives = 89/136 (65.44%), Query Frame = 0


Query: 20  NEAQGIRMGNWMMKPVGLLEKALEEKNLLIEEGFRKM-NLCKNPHGNSGNSRKLLTATPS 79
           ++  GIR+GN ++KP+G LEK+L E++ LIEEGF K+  LC+    NSGN RKLLTAT  
Sbjct: 58  DDEDGIRLGNGIIKPIGQLEKSLAEESPLIEEGFGKIFTLCRKGQCNSGNIRKLLTATSP 117

Query: 80  STSTRSV-KEKGLGNN----------------------NSEAVSENLEAGLQHYPYLIDI 132
           S+ST S+ +    G N                      NSEAVSENLEAG +HYP L+DI
Sbjct: 118 SSSTPSITRNNEEGENFKRGSPISKKEELSVKDKKELDNSEAVSENLEAGQEHYPDLVDI 177

[Close]

BLAST of Lcy03g019560 vs. NCBI nr
Match: KAA0050046.1 (uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 112.8 bits (281), Expect = 2.2e-21
Identity = 79/149 (53.02%), Postives = 93/149 (62.42%), Query Frame = 0


Query: 10  LLLIFFFFFFNEAQGIRMGNW-MMKPVGLLEKALEEKNLLIEEGFRKMNLCKNPHGNSGN 69
           LLL+ FFF  N+AQGIR+GN  M+K VG   K LEE+   + EGFRK  +C+N H NSGN
Sbjct: 12  LLLLLFFFLSNQAQGIRLGNGIMIKLVGQPAKTLEEE---VVEGFRKTTICENGHCNSGN 71

Query: 70  SRKLLTAT----PSS--TSTRSVKEKGL--GN------------------NNSEAVSENL 129
           +RKL+T T    PSS   STR+ +E+    GN                   NSEAVS+NL
Sbjct: 72  NRKLMTVTTPPIPSSPTPSTRNNEEENYKKGNPKSSNKEESSSVKKKDDLENSEAVSKNL 131

Query: 130 EAGLQHYPYLIDIAEMDYSPAKRKPPIHN 132
           EA L     LIDIAEMDYSPAKRKPPIHN
Sbjct: 132 EAALD----LIDIAEMDYSPAKRKPPIHN 153

The following BLAST results are available for this feature:

BLAST of Lcy03g019560 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g019560 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C2H1	5.6e-31	56.77	uncharacterized protein LOC111007333 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A6J1E3V7	2.4e-26	53.55	uncharacterized protein LOC111025844 OS=Momordica charantia OX=3673 GN=LOC111025...	[more]
A0A6J1C2B2	2.1e-25	53.68	uncharacterized protein LOC111007293 OS=Momordica charantia OX=3673 GN=LOC111007...	[more]
A0A5A7U792	1.1e-21	53.02	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A6J1EZP7	4.0e-21	51.37	uncharacterized protein LOC111440836 OS=Cucurbita moschata OX=3662 GN=LOC1114408...	[more]

BLAST of Lcy03g019560 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135362.1	1.2e-30	56.77	uncharacterized protein LOC111007333 [Momordica charantia]	[more]
XP_038876887.1	4.8e-29	57.86	uncharacterized protein LOC120069249 [Benincasa hispida]	[more]
XP_022159421.1	5.0e-26	53.55	uncharacterized protein LOC111025844 [Momordica charantia]	[more]
XP_022135297.1	4.2e-25	53.68	uncharacterized protein LOC111007293 [Momordica charantia]	[more]
KAA0050046.1	2.2e-21	53.02	uncharacterized protein E6C27_scaffold675G00250 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy03g019560 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 60..95
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 61..95
None	No IPR available	PANTHER	PTHR33743:SF19	SUBFAMILY NOT NAMED	coord: 8..99 coord: 99..131
IPR039337	Protein GOLVEN 2	PANTHER	PTHR33743	FAMILY NOT NAMED	coord: 8..99 coord: 99..131

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g019560.1	Lcy03g019560.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0008083	growth factor activity