Lcy03g019240 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g019240
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr03: 52798697 .. 52802099 (-)
RNA-Seq Expression	Lcy03g019240
Synteny	Lcy03g019240

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACAAATGGAACAATGACACTGGCGGAGTTGAAGCGGCCTCTTTGAAGTTCCAAGCGGTGCCACTGGAATTTGTCAGTTTGTTCTCATCCGTTGCATTATTTTATATTATATTCTTTGATTCTTGCGATTTTTCATGGAAATCCTTTTAGTGTTTTTCTTTTTTTCTTGACATTGATTTCCATGGAAACTTGGTAGCACGACTTTTGATGGTCCTCTCCTGCTTATATATATGGGATTTTTGATGGTACAAACCAATTACTATTCATATTTAACGGAAAATCCTTCCAATATCGTTGTTGTTTAGTGGAAAAACCCTGATTACTGTTCCCATCTAAATCACAAAGCTCCCAGCCATGTTTTGGGGTTTTCTTTGATATCGCACCCTCTGTGTTTATTTTATTTTTATTTTTGTTTCCTGTGATTTTGGTGATTCCATATCTGACCAAATATTTCTTTCGCTTCTGAGAATATTGGAATCTGCGATATATTTATATATACGCATTATTTTTCTTTGCCGAAGAGTTTTGCAGATTGTATTTTGTTATTTACTTTCCTAAAACGAAAAATTTCATACCTTCGTGGGCTGCAACTTGGAGAAGGGTGTGAGACTGAACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCTTGAAGGACCTGCTGTTTTCGATTCCCAGATATGGAGCTTCCAAACCGGAAAATTCCCCCATTCAGGTAACTGATTTATTAGATAATAAGATATTCCTGGATTTTTGTTCTCCCTGCCCCCTTTTCCTAAACCATCAATCATCTTCTTCTCTCTGGTTATTTATTCAAGTGGTAGCTAATTAGGGCTTGAACATTGTTTTTCTCAGCACTTGTTTGATGTTGGGAGGCAACAGCCTGCTTATTTTTCCCTTCACTTCAGATTAATAATCACCACCAGCACCAGCACCAGCACCACTGTCCGGTTTAGAGGTAACATTCTGTCTCTTGTTTTTTCTTCTTCCTCTTGATTTATTTTATAGGATTTAATAAAACTGCAATATTTTGTTTGTTTCGTTACCTGATTCTCTTTTCCTAGTTATTCTTGTCCTTTTCTTGTTCATTGAAGCCACAATGTTTTTCTTGAACATTGGTCTATATATTTGGGTTAATTTTACCATGTGGATGTAGCTTTGATGCTCTTTCAGTTCATGTGAAACTAGTTGGTTTCTTGGTTAATGTTTTTAGATGTCGGAATTTTATTGGCATTTGCTTTGGGGTTCCTTTATGACATGCAAATGCTGAAATTTCCAATTAAATGGTTTCTGAGTGATTTAAAAAAATTAATAACTAAGAAGAGTTTGGCCCCTTGTAAAGTTTGACATTCTAGTTAAACCCAACAATGAAAATCTAACTCTTTAGTTGACAATGATTATGTAGTTTAGCAAATTGGGAGATTACAAATGTTATTCCTTAGATTAAAGGAAGCCCAAGAGTTTTGGCTGTCCTTTTCATCCTGAAAGTATTATGAATTTCAAAGATTTGATAATCATCACGATCAAATTTGTTGAAATTCTAGTCACTCGGAGTGCACGGTTCCAGTGTCAACTTATGTAGAGATGCAATTTATGCAAATAGACGACAGCCTACTATAAATTATATGTGGACAAATGAGTTTAAAACTGTTAAGTTTTTAGATTTTTGTTCTAATTTGTTTTTGAATGAAAGAATTTCACATTGGCTTGCATCCTTTTGACTATTTCTTATTAATACACCGATTTGTTTTTCTTAAAGAAAATGGAAATCTTTGAACATTCATTTATTTATTCTCTTTGATTTTTTAAATGCCTGTCATTAAATAGAATCATATGCTATAATATGTGTCCCTCCTTTTAGATGGAAAAAATTTGAAAATAGTAAATGTGGCAAAATATGAAGTATTAAACTATTCATCTTCACATTCTTTTTATCAGCCTTGAGCTGAAAGCTGCCAAAGAAGAAATGCTTGGCACTAGAGTCAAAAGCTCTGGTCTTGAGAATTGTTGTTACTATAAGATTTAACCACTTGAGGTTACACATGAAATGACACCAGAAATAATACTCCAAGCTTTTAAATCCTGTAGCTCTATGGATAATTTCAAACAGTGATTTGAAACATCATTCTCTTTCTTTTTATTTTTTTTTAGATTTCGTTCTAGTACTTTTGAATGAAGTATGACAGGCATTTATTTCTCTTGTTATTCAGGTATTTCTTACCTAAAGATACTGGTTTGTCATATAGTAACATGTGTTGACAGCATTTACTTCCAGTGTACTTCAACTTTTAGACTTTACAGTACTATATTTGGTTGTTGCATATTTTCATGATTGAGTTATTATTTTTCCTAGGTAGAAATTGTTTATTTATCTATTCAAAAAAAAAAAAATTGTTTATTTATAATGACTAGGTAATATACTTCCAGACAGTTACTGTTGTGTCTAACTTTTAATAACAACTATATGCCACAAATATGGGAAACATTGTACTTATAAGGTGTTTGACGTGATTTTGTTAGTGCAGCCTAGAATTGTTAAATATACTTGTGGGAAAGTACTTATTAGGTGTTAGAATTGTTAAATATATTTGTTCCCTATAAGATTAGGTCATGTGATGTTGATGACTAGAATTGTAATTTCCACCCTGGTAAGGTTATTTACTATATTCTTTTTATTAACTTGGAAATATGAGAAATTCTTGAGAAATGTCATATGTAGGTAAGTATTGTCCTGAACAAGAGAAACTTTTTGTCTATTGTACCTCCATGGCCTTTTCCTTTCTATCTTCCTTTCAAGTCAATCCATGTAACCAGATTGTCGGTTAAAGAAAAAACTATTTTTTTCAATTTTCATTATTATCTTAACTAACTTTAAATCCTTGAAGGCTTCACCTGACCTTCTATAATCAGTAGTTTTGTAATGATGTGCTATTTAAATTTGGGGAAGCAAATTTTTACTTCTGCTGTGTCAACTATGATATAAATGTCCAGTTGGATGCATAATTTTGGCTAACTGATTGCATCTGTCTTTTAATTAATGGTTTTTCCTTGTATCCATCTCTATCAATCTCCAGTAAGTTGCTAAATTATGAACTCTAAATGGTAGTCGTTGAATAAAGTGAATGAAAGAATCTATGTAAAAATTATCTTAACCGTGTGCCATTGCCAAGTCTCACATTGTATGGTTGGATTGGTCCAAATGTAAATATTTTGACCTCTCACTCTCTTTAGTTTCCCCTTTGAATTCTATTCTTATTTTCAACTCTTAAAATTATGCTTCTGAGCAACTAGTTTAGCAGATCAATTCCGGAGGATATAGAAATTTCCTTCCATCTTGACATAGAAGATATTTTTTATTCTTAGTATTATTAGCTAAATTTAAATTCATGA

mRNA sequence

ATGGACAAATGGAACAATGACACTGGCGGAGTTGAAGCGGCCTCTTTGAAGTTCCAAGCGGTGCCACTGGAATTTGTCAATTGTATTTTGTTATTTACTTTCCTAAAACGAAAAATTTCATACCTTCGTGGGCTGCAACTTGGAGAAGGGTGTGAGACTGAACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCTTGAAGGACCTGCTGTTTTCGATTCCCAGATATGGAGCTTCCAAACCGGAAAATTCCCCCATTCAGCACTTGTTTGATGTTGGGAGGCAACAGCCTGCTTATTTTTCCCTTCACTTCAGATTAATAATCACCACCAGCACCAGCACCAGCACCACTGTCCGGTTTAGAGATTTCGTTCTAGTACTTTTGAATGAACTAAATTTAAATTCATGA

Coding sequence (CDS)

ATGGACAAATGGAACAATGACACTGGCGGAGTTGAAGCGGCCTCTTTGAAGTTCCAAGCGGTGCCACTGGAATTTGTCAATTGTATTTTGTTATTTACTTTCCTAAAACGAAAAATTTCATACCTTCGTGGGCTGCAACTTGGAGAAGGGTGTGAGACTGAACCGACTCGAGTGCTGAATATGGCAACAATCTCTCGTTTTGGATGCTTGAAGGACCTGCTGTTTTCGATTCCCAGATATGGAGCTTCCAAACCGGAAAATTCCCCCATTCAGCACTTGTTTGATGTTGGGAGGCAACAGCCTGCTTATTTTTCCCTTCACTTCAGATTAATAATCACCACCAGCACCAGCACCAGCACCACTGTCCGGTTTAGAGATTTCGTTCTAGTACTTTTGAATGAACTAAATTTAAATTCATGA

Protein sequence

MDKWNNDTGGVEAASLKFQAVPLEFVNCILLFTFLKRKISYLRGLQLGEGCETEPTRVLNMATISRFGCLKDLLFSIPRYGASKPENSPIQHLFDVGRQQPAYFSLHFRLIITTSTSTSTTVRFRDFVLVLLNELNLNS

Homology

[Close]

BLAST of Lcy03g019240 vs. ExPASy TrEMBL
Match: A0A0A0LW76 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269860 PE=4 SV=1)

HSP 1 Score: 105.9 bits (263), Expect = 1.4e-19
Identity = 55/73 (75.34%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 56  TRVLNMATISRFGCLKDLLFSIPRYGASKPENSPIQHLFDVGRQQPAYFSLHFRLIITTS 115
           T+VLNMATISRFGCLK LLFS PRYG S PEN PIQHLFDVGRQQ AY SLHFRL IT +
Sbjct: 117 TQVLNMATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIA 176

Query: 116 TSTSTTVRFRDFV 129
           T     VR+R FV
Sbjct: 177 T---PIVRYRGFV 186

[Close]

BLAST of Lcy03g019240 vs. NCBI nr
Match: KAG7035673.1 (AP2/ERF and B3 domain-containing transcription factor [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.9 bits (250), Expect = 9.1e-18
Identity = 54/79 (68.35%), Postives = 58/79 (73.42%), Query Frame = 0


Query: 61  MATISRFGCLKDLLFSIPRYGASKPENSPIQHLFDVGRQQPAYFSLHFRLIITTSTSTST 120
           MATISRFGCLK L FS PRYGASKPEN PIQHL DVGRQQPAYFSLHFR  I T   T+ 
Sbjct: 1   MATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIIT---TTP 60

Query: 121 TVRFRDFVLVLLNELNLNS 140
           TVR R   L+L   + L +
Sbjct: 61  TVRLRVIHLILFLNMGLTT 76

[Close]

BLAST of Lcy03g019240 vs. NCBI nr
Match: KAG6587833.1 (hypothetical protein SDJN03_16398, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 100.5 bits (249), Expect = 1.2e-17
Identity = 54/77 (70.13%), Postives = 57/77 (74.03%), Query Frame = 0


Query: 61  MATISRFGCLKDLLFSIPRYGASKPENSPIQHLFDVGRQQPAYFSLHFRLIITTSTSTST 120
           MATISRFGCLK L FS PRYGASKPEN PIQHL DVGRQQPAYFSLHFR  I T   T+ 
Sbjct: 1   MATISRFGCLKVLPFSSPRYGASKPENFPIQHLLDVGRQQPAYFSLHFRFAIIT---TTP 60

Query: 121 TVRFRDFVLVLLNELNL 138
           TVR R   L+L   + L
Sbjct: 61  TVRLRVIHLILFLNMGL 74

[Close]

BLAST of Lcy03g019240 vs. NCBI nr
Match: KAE8653049.1 (hypothetical protein Csa_020128 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-16
Identity = 51/72 (70.83%), Postives = 54/72 (75.00%), Query Frame = 0


Query: 61  MATISRFGCLKDLLFSIPRYGASKPENSPIQHLFDVGRQQPAYFSLHFRLIITTSTSTST 120
           MATISRFGCLK LLFS PRYG S PEN PIQHLFDVGRQQ AY SLHFRL IT +T    
Sbjct: 1   MATISRFGCLKGLLFSSPRYGVSNPENFPIQHLFDVGRQQIAYVSLHFRLTITIAT---P 60

Query: 121 TVRFRDFVLVLL 133
            VR+R   + LL
Sbjct: 61  IVRYRGNNIFLL 69

The following BLAST results are available for this feature:

BLAST of Lcy03g019240 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g019240 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW76	1.4e-19	75.34	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G269860 PE=4 SV=1	[more]

BLAST of Lcy03g019240 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7035673.1	9.1e-18	68.35	AP2/ERF and B3 domain-containing transcription factor [Cucurbita argyrosperma su...	[more]
KAG6587833.1	1.2e-17	70.13	hypothetical protein SDJN03_16398, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAE8653049.1	6.5e-16	70.83	hypothetical protein Csa_020128 [Cucumis sativus]	[more]

BLAST of Lcy03g019240 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g019240.1	Lcy03g019240.1	mRNA