Lcy03g019020 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g019020
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 52646768 .. 52647615 (+)
RNA-Seq ExpressionLcy03g019020
SyntenyLcy03g019020
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TCAATGTTCTGAAATGGGAAAAAGAAATTAAGATAAAAAAAAATTGACTCAATCTGCAAGCTGCTGCTATCAAACAAAACTTTCCCTAATTTTTATAATATAGTAATTAAACAACACACGGCTTCTTACCAACTAATATGAATTATGAATTTTCGTGCAAATTCGATCGCTGATTTTCCTGGTGAAGACGTTCGAAAAACCCCCAAATACGAAGCTTCGATGAACCAAGAAACTTTCGATTTTCCGGGAAAATCAACAGGAAAATTCTGCCGATTTCAATGGTCAAAACGCGCCGAAATTAAAAACCATATCATCTTCATCTTCTTTTGAGTCTGAAATTATATAAATCCATGCGATTACACTCTGTATCTCCATTCTCTGATTCTCTTCGCTCAACGACGGAAGCTCGAATTGGATTTGCCCTACACAAATGGCTGCAATTAAACTCTTCGTTCCGATAGCCCTAATTGCTCTTCTCTTGCTTTCTGAATCTCTCACTATTTCGTCTGCTGCTGATCGTGGCGAGGATTCGGATTCTTTCACCGGAATTCTTCGCCGGAATATGCTTAATGGAGCGGAGCATCGGCGGGCGGATAACGATACGGGCGCCTCTTTGGCTGGAAAGATCAGTATCAAAAGAGGAGCTCGATCCGCCGTAATTGCAGGTCGTTCAAGTGGATCTTCGTCGAGCCGAGTGCCGCCCTTGAATGTTGGGTCTGTGATTTGTTTCTGCTTAGCGTTTGTGTTTGCTTTGTTATTGTGAAATTGTGAAGTGAAGCAATCATTTATGTTCAATTCATTTGATTATTGTAAGGTAATTGGGAGATTTTTTTTTTTTTTTTCTCTTT

mRNA sequence

TCAATGTTCTGAAATGGGAAAAAGAAATTAAGATAAAAAAAAATTGACTCAATCTGCAAGCTGCTGCTATCAAACAAAACTTTCCCTAATTTTTATAATATAGTAATTAAACAACACACGGCTTCTTACCAACTAATATGAATTATGAATTTTCGTGCAAATTCGATCGCTGATTTTCCTGGTGAAGACGTTCGAAAAACCCCCAAATACGAAGCTTCGATGAACCAAGAAACTTTCGATTTTCCGGGAAAATCAACAGGAAAATTCTGCCGATTTCAATGGTCAAAACGCGCCGAAATTAAAAACCATATCATCTTCATCTTCTTTTGAGTCTGAAATTATATAAATCCATGCGATTACACTCTGTATCTCCATTCTCTGATTCTCTTCGCTCAACGACGGAAGCTCGAATTGGATTTGCCCTACACAAATGGCTGCAATTAAACTCTTCGTTCCGATAGCCCTAATTGCTCTTCTCTTGCTTTCTGAATCTCTCACTATTTCGTCTGCTGCTGATCGTGGCGAGGATTCGGATTCTTTCACCGGAATTCTTCGCCGGAATATGCTTAATGGAGCGGAGCATCGGCGGGCGGATAACGATACGGGCGCCTCTTTGGCTGGAAAGATCAGTATCAAAAGAGGAGCTCGATCCGCCGTAATTGCAGGTCGTTCAAGTGGATCTTCGTCGAGCCGAGTGCCGCCCTTGAATGTTGGGTCTGTGATTTGTTTCTGCTTAGCGTTTGTGTTTGCTTTGTTATTGTGAAATTGTGAAGTGAAGCAATCATTTATGTTCAATTCATTTGATTATTGTAAGGTAATTGGGAGATTTTTTTTTTTTTTTTCTCTTT

Coding sequence (CDS)

ATGGCTGCAATTAAACTCTTCGTTCCGATAGCCCTAATTGCTCTTCTCTTGCTTTCTGAATCTCTCACTATTTCGTCTGCTGCTGATCGTGGCGAGGATTCGGATTCTTTCACCGGAATTCTTCGCCGGAATATGCTTAATGGAGCGGAGCATCGGCGGGCGGATAACGATACGGGCGCCTCTTTGGCTGGAAAGATCAGTATCAAAAGAGGAGCTCGATCCGCCGTAATTGCAGGTCGTTCAAGTGGATCTTCGTCGAGCCGAGTGCCGCCCTTGAATGTTGGGTCTGTGATTTGTTTCTGCTTAGCGTTTGTGTTTGCTTTGTTATTGTGA

Protein sequence

MAAIKLFVPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGASLAGKISIKRGARSAVIAGRSSGSSSSRVPPLNVGSVICFCLAFVFALLL
Homology
BLAST of Lcy03g019020 vs. ExPASy TrEMBL
Match: A0A0A0LYV9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.2e-10
Identity = 59/113 (52.21%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 2   AAIKLF-VPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGA 61
           AAI  F +PIALI+LLL SESL   S++D  +DS                +R  D D+G 
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDS----------------NRPGDKDSGT 62

Query: 62  SLAGKISIKRGARSAVIAGRSSGSSSSRVPP---LNVGSVICFCLAFVFALLL 111
           SL  KISIKRG RS VIAGRS+ SSS+RV      NVGSVICF +AFV A+ L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of Lcy03g019020 vs. ExPASy TrEMBL
Match: A0A5D3BCG4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00480 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 6.0e-10
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 1   MAAIKLF-VPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTG 60
           MAAI  F +P+ALI+LLL SESL   S+ D G++S                +RR D  + 
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNS----------------NRRGDKGSD 60

Query: 61  ASLAGKISIKRGARSAVIAGRSSGSSSSRVPP--LNVGSVICFCLAFVFALLL 111
            SLAGKI  KRG RS V AGRS+ SSS+++     NVGS+ICF +AFVFA+ L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

BLAST of Lcy03g019020 vs. ExPASy TrEMBL
Match: A0A6J1GRX2 (uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC111456466 PE=4 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 6.4e-04
Identity = 45/108 (41.67%), Postives = 57/108 (52.78%), Query Frame = 0

Query: 1   MAAIKLFVPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAE-HRRADNDTG 60
           MA IK  + IAL+ALLLLSE L I SAAD G        + RR+ L  AE H+ A+N  G
Sbjct: 90  MAPIKSLISIALLALLLLSEHLPI-SAADHGVAPSPLARVFRRDTLQTAERHQVAENGIG 149

Query: 61  ASLAGKISIKRGARSAVIAGRSSGSSS---SRVPPLNVGSVICFCLAF 105
              + +  I+R AR AV        SS   S+     VGS++C C  F
Sbjct: 150 YQYSFEQKIRRRARRAVRRAEGPSPSSANWSQTSSFGVGSLLCLCTVF 196

BLAST of Lcy03g019020 vs. ExPASy TrEMBL
Match: A0A6J1JZB1 (uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111488793 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-04
Identity = 45/108 (41.67%), Postives = 56/108 (51.85%), Query Frame = 0

Query: 1   MAAIKLFVPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAE-HRRADNDTG 60
           MA IK  + IAL+ALLLL E L I SAAD G       G+ R + L  AE H+ A+N  G
Sbjct: 63  MAPIKSLISIALLALLLLFERLPI-SAADHGVAPSPLAGVFRLDTLQTAERHQVAENGIG 122

Query: 61  ASLAGKISIKRGARSAVIAGRSSGSSS---SRVPPLNVGSVICFCLAF 105
              + +  I+R AR AV        SS   SR     VGS++C C  F
Sbjct: 123 NQYSFEQKIRRRARRAVRRAEGPSPSSANWSRTSSFGVGSLLCLCTVF 169

BLAST of Lcy03g019020 vs. NCBI nr
Match: KAG6587814.1 (hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 120.2 bits (300), Expect = 1.1e-23
Identity = 74/109 (67.89%), Postives = 81/109 (74.31%), Query Frame = 0

Query: 1   MAAIKLFVPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGA 60
           MA IK   PI LI LLLLSES  +SS AD  +D  S TGIL RN+L+  EH+R D DTG+
Sbjct: 1   MAPIKRLFPITLICLLLLSESFPVSS-ADYDQDWKSLTGILHRNVLHPLEHQRLDKDTGS 60

Query: 61  SLAGKISIKRGARSAVIAGRSSGSSSSRVPPLNVGSVICFCLAFVFALL 110
           SLA KISIKRGARSAVI G SS SSSSRVPP N+ SVICF  AF FALL
Sbjct: 61  SLAEKISIKRGARSAVIGGHSSISSSSRVPPFNIASVICFVFAFAFALL 108

BLAST of Lcy03g019020 vs. NCBI nr
Match: KGN65176.1 (hypothetical protein Csa_019975 [Cucumis sativus])

HSP 1 Score: 75.9 bits (185), Expect = 2.5e-10
Identity = 59/113 (52.21%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 2   AAIKLF-VPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGA 61
           AAI  F +PIALI+LLL SESL   S++D  +DS                +R  D D+G 
Sbjct: 3   AAIHRFLLPIALISLLLFSESLPAISSSDHIQDS----------------NRPGDKDSGT 62

Query: 62  SLAGKISIKRGARSAVIAGRSSGSSSSRVPP---LNVGSVICFCLAFVFALLL 111
           SL  KISIKRG RS VIAGRS+ SSS+RV      NVGSVICF +AFV A+ L
Sbjct: 63  SLTEKISIKRGVRSGVIAGRSTTSSSARVSSSSFFNVGSVICFNIAFVLAMFL 99

BLAST of Lcy03g019020 vs. NCBI nr
Match: KAA0035100.1 (hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ95978.1 hypothetical protein E5676_scaffold271G00480 [Cucumis melo var. makuwa])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 55/113 (48.67%), Postives = 70/113 (61.95%), Query Frame = 0

Query: 1   MAAIKLF-VPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTG 60
           MAAI  F +P+ALI+LLL SESL   S+ D G++S                +RR D  + 
Sbjct: 1   MAAIHRFLLPLALISLLLFSESLAAISSTDHGQNS----------------NRRGDKGSD 60

Query: 61  ASLAGKISIKRGARSAVIAGRSSGSSSSRVPP--LNVGSVICFCLAFVFALLL 111
            SLAGKI  KRG RS V AGRS+ SSS+++     NVGS+ICF +AFVFA+ L
Sbjct: 61  TSLAGKIISKRGVRSGVTAGRSTSSSSAQMSSSFFNVGSLICFNIAFVFAMFL 97

BLAST of Lcy03g019020 vs. NCBI nr
Match: KAG6575859.1 (hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sororia] >KAG7014393.1 hypothetical protein SDJN02_24570, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-09
Identity = 50/100 (50.00%), Postives = 65/100 (65.00%), Query Frame = 0

Query: 1  MAAIKLFVPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGA 60
          MAA+K  V +AL+ALLL SESLT +SA DR  DS+S TG+LRRN+L  A H+ ADN   +
Sbjct: 1  MAALKSLVSVALLALLLFSESLT-ASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVES 60

Query: 61 SLAGK--ISIKRGARSAVIAGRSSGSSSSRVPPLNVGSVI 99
          S   K  + IKR  R      RSS ++ SR+  + VGSV+
Sbjct: 61 SPERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVL 99

BLAST of Lcy03g019020 vs. NCBI nr
Match: KAG6589765.1 (hypothetical protein SDJN03_15188, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023436.1 hypothetical protein SDJN02_14461, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 57.4 bits (137), Expect = 9.1e-05
Identity = 36/63 (57.14%), Postives = 43/63 (68.25%), Query Frame = 0

Query: 8   VPIALIALLLLSESLTISSAADRGEDSDSFTGILRRNMLNGAEHRRADNDTGASLAGKIS 67
           VPIALI       SL+    A  G+DS SFTG+LRRN+L+ +EHR AD  TG+S A KIS
Sbjct: 52  VPIALI-------SLSPCCLAYHGDDSSSFTGVLRRNILHPSEHRWADKHTGSSSAMKIS 107

Query: 68  IKR 71
           IKR
Sbjct: 112 IKR 107

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0LYV91.2e-1052.21Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257330 PE=4 SV=1[more]
A0A5D3BCG46.0e-1048.67Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1GRX26.4e-0441.67uncharacterized protein LOC111456466 OS=Cucurbita moschata OX=3662 GN=LOC1114564... [more]
A0A6J1JZB18.3e-0441.67uncharacterized protein LOC111488793 isoform X1 OS=Cucurbita maxima OX=3661 GN=L... [more]
Match NameE-valueIdentityDescription
KAG6587814.11.1e-2367.89hypothetical protein SDJN03_16379, partial [Cucurbita argyrosperma subsp. sorori... [more]
KGN65176.12.5e-1052.21hypothetical protein Csa_019975 [Cucumis sativus][more]
KAA0035100.11.2e-0948.67hypothetical protein E6C27_scaffold57G001750 [Cucumis melo var. makuwa] >TYJ9597... [more]
KAG6575859.11.2e-0950.00hypothetical protein SDJN03_26498, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6589765.19.1e-0557.14hypothetical protein SDJN03_15188, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g019020.1Lcy03g019020.1mRNA