Lcy03g018890 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g018890
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionDNA-directed RNA polymerase subunit beta
LocationChr03: 52546389 .. 52548745 (-)
RNA-Seq ExpressionLcy03g018890
SyntenyLcy03g018890
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCGTGTCAAACATTTTTTCATTTGTCCTCGATACCATCAATAGTGAGTTGAGTTTACATGCATTGTTCGATGTTTCCCTTGAATAGTGTTTTGCCCCAAATTACTGGATCCTTTGTGTTGATTCCACATCGTTCAAGAAGTGATGATCTATATGGCCTTGCAAGATAAAGTAGATATATCAAAGTAGGTAGTGTCCTGAAAATGTACCATCGGGCTCCATTGAACCCAATACAAGTCTCACCATCTTACAAGCCCATATGTTATGAATTCCAGTAGTTAACTAATTAAAAATACTCTTAAATTATGGGTCAGTTTCAATTATATCTTCGAGGTTTGAATTTTGTTTCAAAACAACTCCTGAACACATTTGTTGTTAAATTAATTAATGGACAGAAGATGACGTGCATGTTTGCTTATGTGAAAAATTTGAACACACGTGTAAAAAATAATAATAAAGACACACGTGATATAGCTCCAAAAAAATGAAAGAATTTTGAGGTTATTAGGGATAAAATCATAAATGGTTGGAAGAAAACAAAATTTGAGGCGTAAGATTGAAAGGAGGAAAATAACCTAGAGGGTCAAAAGTTAAAGTTTAGAAGTATAAGTAGACACATCGTTTTTCATTCATGAATCTAACCAACGACGACCTTCGAGTGTCCATTTCAAAAAATAATAATAATAACCTTCAAAGGTCGTTAAACAAAAAATTTTCAAAGTTTCGAGCATAACTGAAACCAATTCCATAATTCATGGTATTTTAAATTATTTAACCAATTCTAACTTCCCTCACCTTTCCATAATGCTACAGTCCCAACTACTTATCTTATAGTTAGTGGCCCTGGCCTGGAGCAATTAGCAATTAGAATCTAACACGAGTTTATTATGCTATATATCTGTCACATTGCATTCAATAAAATATGGGTATAGAAAAAGAATCAGTTTTTCACGTTTCTTATTATTGATGAAATTTCAACATTGCACCATAAATATAATCCTTTTAGGGTGAAAAGGGACCACTGGTATTGGAATACTGTCTCTTTTTTCCCATTAAAAAGGAACAAGACATTAAAGAGGAAACCACGTTATTTAGAAACATGCATTTCTAAATTATTATCTGTAAAGAAGCAAGCAGATCCAAATCAAAACACAAAAGTACAAATTCATTTAACTCAAACTATACTTGTCAATTTTAATATAGCTCAATTATTTAAGTTATTACTATCCATCACAAATTGCTGACGTGTTTTTTAGTTGATAAAAACATTTTTATATGGTTAGATTTAGATAATTAAAGAAAAAAGATAAAATAATCCTAAAAATCCTAAAGAAAAAACACGCGTGCTGTGATAATTAATATATAGTTTTCATACTATATATTAATTTTAACCACCAGAGGACATAATTCAGGACAATAACTTCAAATTCCATCTGTTTCTCTTCAAAAAAAAAAAAAAAATAAATAAAAAAAAAAAAAACTTCAAATTCCATCCTCGAACAAAAGAGAAAAGAATATTCTAAAAAAAAATTAACGGTGGAATTCCGGCTGCCCAGAATATTATTTTCATTCATGAAAAAGGATGTGGCTGTAATTAATTCTACCGACCTTTTATTCCAGATTTTCCAAAATTGTCCCAAGTGATAGGGAATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTATGAAAATTAATTTCGATCTTCTTGTTTTCCTTGAGATTCGCTCTTGTTCTGTTTCCTCTGAAATTGAAGTCGAGTTAGGGATTCCATGGAATGATTAGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAAGTGTACGGATGATGCCCGAAATTGGCCACAACTAATTTTTATGGTAGTTCTGATTTTTTTTAAGTATATAACTCATGTGAATATTTGAATCTTCTACTTTTCTTAGTTGTATGGAATCCATTTTTGACCATATATAGCTCGTCTTAATCGATGGTATAGATTTTTATGTCAATTGAACTATACTCGTGTCGAGAAATATAGATACATTTATAACTATACTCATGTTTTAA

mRNA sequence

CCGTGTCAAACATTTTTTCATTTGTCCTCGATACCATCAATAGTGAGTTGAGTTTACATGCATTGTTCGATGTTTCCCTTGAATAGTGTTTTGCCCCAAATTACTGGATCCTTTGTGTTGATTCCACATCGTTCAAGAAGTGATGATCTATATGGCCTTGCAAGATAAAGTAGATATATCAAAGTAGGTAGTGTCCTGAAAATGTACCATCGGGCTCCATTGAACCCAATACAAGTCTCACCATCTTACAAGCCCATATGTTATGAATTCCAGTAGTTAACTAATTAAAAATACTCTTAAATTATGGGTCAGTTTCAATTATATCTTCGAGGTTTGAATTTTGTTTCAAAACAACTCCTGAACACATTTGTTGTTAAATTAATTAATGGACAGAAGATGACGTGCATGTTTGCTTATGTGAAAAATTTGAACACACGTGTAAAAAATAATAATAAAGACACACGTGATATAGCTCCAAAAAAATGAAAGAATTTTGAGGTTATTAGGGATAAAATCATAAATGGTTGGAAGAAAACAAAATTTGAGGCGTAAGATTGAAAGGAGGAAAATAACCTAGAGGGTCAAAAGTTAAAGTTTAGAAGTATAAGTAGACACATCGTTTTTCATTCATGAATCTAACCAACGACGACCTTCGAGTGTCCATTTCAAAAAATAATAATAATAACCTTCAAAGGTCGTTAAACAAAAAATTTTCAAAGTTTCGAGCATAACTGAAACCAATTCCATAATTCATGGTATTTTAAATTATTTAACCAATTCTAACTTCCCTCACCTTTCCATAATGCTACAGTCCCAACTACTTATCTTATAGTTAGTGGCCCTGGCCTGGAGCAATTAGCAATTAGAATCTAACACGAGTTTATTATGCTATATATCTGTCACATTGCATTCAATAAAATATGGGTATAGAAAAAGAATCAGTTTTTCACGTTTCTTATTATTGATGAAATTTCAACATTGCACCATAAATATAATCCTTTTAGGGTGAAAAGGGACCACTGGTATTGGAATACTGTCTCTTTTTTCCCATTAAAAAGGAACAAGACATTAAAGAGGAAACCACGTTATTTAGAAACATGCATTTCTAAATTATTATCTGTAAAGAAGCAAGCAGATCCAAATCAAAACACAAAAGTACAAATTCATTTAACTCAAACTATACTTGTCAATTTTAATATAGCTCAATTATTTAAGTTATTACTATCCATCACAAATTGCTGACGTGTTTTTTAGTTGATAAAAACATTTTTATATGGTTAGATTTAGATAATTAAAGAAAAAAGATAAAATAATCCTAAAAATCCTAAAGAAAAAACACGCGTGCTGTGATAATTAATATATAGTTTTCATACTATATATTAATTTTAACCACCAGAGGACATAATTCAGGACAATAACTTCAAATTCCATCTGTTTCTCTTCAAAAAAAAAAAAAAAATAAATAAAAAAAAAAAAAACTTCAAATTCCATCCTCGAACAAAAGAGAAAAGAATATTCTAAAAAAAAATTAACGGTGGAATTCCGGCTGCCCAGAATATTATTTTCATTCATGAAAAAGGATGTGGCTGTAATTAATTCTACCGACCTTTTATTCCAGATTTTCCAAAATTGTCCCAAGTGATAGGGAATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAAGTGTACGGATGATGCCCGAAATTGGCCACAACTAATTTTTATGGTAGTTCTGATTTTTTTTAAGTATATAACTCATGTGAATATTTGAATCTTCTACTTTTCTTAGTTGTATGGAATCCATTTTTGACCATATATAGCTCGTCTTAATCGATGGTATAGATTTTTATGTCAATTGAACTATACTCGTGTCGAGAAATATAGATACATTTATAACTATACTCATGTTTTAA

Coding sequence (CDS)

ATGGCGATCGCAGATTCGAGTCTTATCTTCATCGGTGTCTCCGCCGTACCTCGTCCCCTTTTCAACACCAACAATGGCGGAAAATTCAGAGCCACATCGGCTAAAAGAACAGACGATTACGATTCCACTTCATCGACTCAAGCAAATCGGCTCAAAATTCCATCGCTGAGACTGAGAGTTTCAAATCCACTTCTCGCCCGATCTGTCGTTTCGGTACTCGGATTAGGGTTCGTCGATGCAGGGTACAGTGGAGATTGGTCTAGAATTGGTGCGATTACGAAGGAGAGTGAAGATTTGTTGAAGATTGGAGCTTTCTTGGTGGTTCCGTTTTGCTTATTTCTGATTTTTTCTTTCTCCAAAGGGACGGATTCTTCGTAA

Protein sequence

MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFSKGTDSS
Homology
[Close]
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match: A0A1S3B903 (uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.7e-43
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLR 60
           MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPS-- 60

Query: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFS 120
           LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGAFLVVPFC+FL+FS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 FSK-GTDSS 126
           FSK  +DSS
Sbjct: 121 FSKFDSDSS 127

[Close]
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match: A0A0A0LWH4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 1.5e-41
Identity = 99/128 (77.34%), Postives = 105/128 (82.03%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRL 60
           MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  L
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS--L 60

Query: 61  RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGA LVVPFC+FL+FSF
Sbjct: 61  RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSF 120

Query: 121 SK-GTDSS 126
           SK  +DSS
Sbjct: 121 SKYDSDSS 126

[Close]
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match: A0A6J1EZT4 (uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC111440861 PE=4 SV=1)

HSP 1 Score: 173.3 bits (438), Expect = 6.3e-40
Identity = 97/126 (76.98%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGAFLVVPFC+FLIFSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KGTDSS 126
           + TDSS
Sbjct: 121 EQTDSS 121

[Close]
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match: A0A6J1KT82 (uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.2e-40
Identity = 97/126 (76.98%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS 120
           VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIGAFLVVPFC+FLIFSFS
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KGTDSS 126
           + TDSS
Sbjct: 121 EQTDSS 121

[Close]
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match: A0A6J1C0R6 (uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007301 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 4.5e-38
Identity = 90/123 (73.17%), Postives = 98/123 (79.67%), Query Frame = 0 

Query: 3   IADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRVSN 62
           +ADS+ IF G SAV R LFN NN   FR   AKRTDD  +T S Q N+ + PS  LRV N
Sbjct: 1   MADSTFIFSGPSAVSRSLFNVNNRRNFRTALAKRTDDSTATKSNQENQFEFPS--LRVPN 60

Query: 63  PLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFSKGT 122
           PL+AR VVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFC+FLI SF+K T
Sbjct: 61  PLVARFVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCVFLISSFAKQT 120

Query: 123 DSS 126
           DSS
Sbjct: 121 DSS 121

[Close]
BLAST of Lcy03g018890 vs. NCBI nr
Match: XP_008443827.1 (PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 5.6e-43
Identity = 101/129 (78.29%), Postives = 109/129 (84.50%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPLFN---TNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLR 60
           MA+ DSS IFIG+SAVP PL N    NNG KF  TSAKRT D DSTSSTQ N+ K PS  
Sbjct: 1   MAMVDSSFIFIGISAVPHPLLNNNKNNNGRKFGITSAKRTQDSDSTSSTQPNQFKFPS-- 60

Query: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFS 120
           LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+E+LLKIGAFLVVPFC+FL+FS
Sbjct: 61  LRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEELLKIGAFLVVPFCVFLVFS 120

Query: 121 FSK-GTDSS 126
           FSK  +DSS
Sbjct: 121 FSKFDSDSS 127

[Close]
BLAST of Lcy03g018890 vs. NCBI nr
Match: XP_004146667.1 (uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical protein Csa_020133 [Cucumis sativus])

HSP 1 Score: 178.7 bits (452), Expect = 3.1e-41
Identity = 99/128 (77.34%), Postives = 105/128 (82.03%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRT--DDYDSTSSTQANRLKIPSLRL 60
           MA+ DSS IFIG S VP PL N NNG KF  TSAKRT   D DS SSTQ N+ K PS  L
Sbjct: 1   MAMVDSSFIFIGFSPVPHPLLNNNNGRKFGITSAKRTQDSDSDSASSTQPNQFKFPS--L 60

Query: 61  RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSF 120
           RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGA LVVPFC+FL+FSF
Sbjct: 61  RVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGALLVVPFCVFLVFSF 120

Query: 121 SK-GTDSS 126
           SK  +DSS
Sbjct: 121 SKYDSDSS 126

[Close]
BLAST of Lcy03g018890 vs. NCBI nr
Match: XP_022933449.1 (uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothetical protein SDJN03_16366, partial [Cucurbita argyrosperma subsp. sororia] >KAG7035696.1 hypothetical protein SDJN02_02494, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 1.3e-39
Identity = 97/126 (76.98%), Postives = 105/126 (83.33%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRP-LFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P P L + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLLLSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS 120
           V+NPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+EDLLKIGAFLVVPFC+FLIFSFS
Sbjct: 61  VANPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDLLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KGTDSS 126
           + TDSS
Sbjct: 121 EQTDSS 121

[Close]
BLAST of Lcy03g018890 vs. NCBI nr
Match: XP_023004836.1 (uncharacterized protein LOC111498016 [Cucurbita maxima])

HSP 1 Score: 172.9 bits (437), Expect = 1.7e-39
Identity = 97/126 (76.98%), Postives = 104/126 (82.54%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPL-FNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLR 60
           M IADSS IF G+SA+P PL  + NN  KF  TSAKRT D DS SSTQ   LK PS  LR
Sbjct: 1   MPIADSSFIFTGLSALPHPLILSNNNARKFGTTSAKRTGDSDSISSTQ---LKFPS--LR 60

Query: 61  VSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFS 120
           VSNPLLARSVV+VLGLGFVDAGYSGDWSRIGAITKE+ED LKIGAFLVVPFC+FLIFSFS
Sbjct: 61  VSNPLLARSVVAVLGLGFVDAGYSGDWSRIGAITKETEDFLKIGAFLVVPFCVFLIFSFS 120

Query: 121 KGTDSS 126
           + TDSS
Sbjct: 121 EQTDSS 121

[Close]
BLAST of Lcy03g018890 vs. NCBI nr
Match: XP_038879768.1 (uncharacterized protein LOC120071517 [Benincasa hispida])

HSP 1 Score: 168.3 bits (425), Expect = 4.2e-38
Identity = 93/126 (73.81%), Postives = 106/126 (84.13%), Query Frame = 0 

Query: 1   MAIADSSLIFIGVSAVPRPLFNTNNGGKFRATSAKRTDDYDSTSSTQANRLKIPSLRLRV 60
           MA+ +SS IFIGVS VP PL N N+  KFR TSAK T+D DS S  ++++LK PS  LRV
Sbjct: 27  MAMVNSSFIFIGVSTVPYPLSNNNHSRKFRITSAKLTEDSDSDS--KSSQLKFPS--LRV 86

Query: 61  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLFLIFSFSK 120
           SNPLLARSVVSVLGLGFVDAGYSGDWSRIG ITKESE+LLKIGAFLVVPFC+FL+FSFS+
Sbjct: 87  SNPLLARSVVSVLGLGFVDAGYSGDWSRIGVITKESEELLKIGAFLVVPFCVFLVFSFSR 146

Query: 121 -GTDSS 126
             +DSS
Sbjct: 147 LDSDSS 148

[Close]
BLAST of Lcy03g018890 vs. TAIR 10
Match: AT4G30845.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; Has 16 Blast hits to 16 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 16; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 98.6 bits (244), Expect = 3.8e-21
Identity = 45/66 (68.18%), Postives = 56/66 (84.85%), Query Frame = 0 

Query: 54  PSLRLRVSNPLLARSVVSVLGLGFVDAGYSGDWSRIGAITKESEDLLKIGAFLVVPFCLF 113
           P LR++V N ++ARS ++VL LGF+DAGYSGDWSRIG I+KE+E+LLKI AFLVVP C+F
Sbjct: 44  PILRIKVPNTIVARSAIAVLSLGFIDAGYSGDWSRIGVISKETEELLKIAAFLVVPLCIF 103

Query: 114 LIFSFS 120
           L  SFS
Sbjct: 104 LALSFS 109

The following BLAST results are available for this feature:
BLAST of Lcy03g018890 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g018890 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3B9032.7e-4378.29uncharacterized protein LOC103487329 OS=Cucumis melo OX=3656 GN=LOC103487329 PE=... [more]
A0A0A0LWH41.5e-4177.34Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G257930 PE=4 SV=1[more]
A0A6J1EZT46.3e-4076.98uncharacterized protein LOC111440861 OS=Cucurbita moschata OX=3662 GN=LOC1114408... [more]
A0A6J1KT828.2e-4076.98uncharacterized protein LOC111498016 OS=Cucurbita maxima OX=3661 GN=LOC111498016... [more]
A0A6J1C0R64.5e-3873.17uncharacterized protein LOC111007301 OS=Momordica charantia OX=3673 GN=LOC111007... [more]
BLAST of Lcy03g018890 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008443827.15.6e-4378.29PREDICTED: uncharacterized protein LOC103487329 [Cucumis melo][more]
XP_004146667.13.1e-4177.34uncharacterized protein LOC101206545 [Cucumis sativus] >KGN65187.1 hypothetical ... [more]
XP_022933449.11.3e-3976.98uncharacterized protein LOC111440861 [Cucurbita moschata] >KAG6587801.1 hypothet... [more]
XP_023004836.11.7e-3976.98uncharacterized protein LOC111498016 [Cucurbita maxima][more]
XP_038879768.14.2e-3873.81uncharacterized protein LOC120071517 [Benincasa hispida][more]
BLAST of Lcy03g018890 vs. TAIR 10
Match NameE-valueIdentityDescription
AT4G30845.13.8e-2168.18unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR38389DNA-DIRECTED RNA POLYMERASE SUBUNIT BETAcoord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g018890.1Lcy03g018890.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016021 integral component of membrane