Lcy03g015140 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g015140
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	transcription factor ILI6-like
Location	Chr03: 49162715 .. 49163305 (-)
RNA-Seq Expression	Lcy03g015140
Synteny	Lcy03g015140

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAGCTTTGTGTGTGAATCTTCTGCTGTGCACAAACAGAGACTCCGTGTCTCATCTGATTTCATCCTCATTTCTACCCATTCACTTGTTATTCAGCTCTCTAGCTAGTTCAGTTTCATACTTTGATTATTATAGCTATTTACAATATTACAAAGATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCAAGGATTACCGATGACCAAATCAACGATCTCGTTTCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCCATAGGCAATCCGACAAGGTCACACAACTTCTTCTTTCTTTCTGCCATCTCTCTTTTAAAATATATCTTAACCAGACGAGTCACGCCGTTCGTTCAACCAAGTCAAGTAGTGATGTTTTAGAAGTTTTAGTATATGAATACTTTCTGTTCTGATACCATGTTAAATTGTTGTGCACAGGTTTCCGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATTAGAAGTTTGCATAGAGAGGTGGATGATTTGAGTGAGAGACTTTCGGAGTTGTTGGCAACGTCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

mRNA sequence

CTAAGCTTTGTGTGTGAATCTTCTGCTGTGCACAAACAGAGACTCCGTGTCTCATCTGATTTCATCCTCATTTCTACCCATTCACTTGTTATTCAGCTCTCTAGCTAGTTCAGTTTCATACTTTGATTATTATAGCTATTTACAATATTACAAAGATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCAAGGATTACCGATGACCAAATCAACGATCTCGTTTCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCCATAGGCAATCCGACAAGGTTTCCGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATTAGAAGTTTGCATAGAGAGGTGGATGATTTGAGTGAGAGACTTTCGGAGTTGTTGGCAACGTCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

Coding sequence (CDS)

ATGTCAAGCAGAAGATCCAGATCTAGGCAATCAGGCAGCTCAAGGATTACCGATGACCAAATCAACGATCTCGTTTCCAAGTTGCAGCAACTTCTTCCCGAGATTCGCCATAGGCAATCCGACAAGGTTTCCGCAGCGAAAGTGTTGCAGGAGACGTGTAACTACATTAGAAGTTTGCATAGAGAGGTGGATGATTTGAGTGAGAGACTTTCGGAGTTGTTGGCAACGTCTGATACTGCTCAAGCTGCCATTATTAGGAGTTTATTGATGCAATAG

Protein sequence

MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLHREVDDLSERLSELLATSDTAQAAIIRSLLMQ

Homology

[Close]

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot
Match: B8APB5 (Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-31
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSD--TAQAAIIRSLLM 91
          +EVDDLSERLSELLATSD  +AQAAIIRSLLM
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot
Match: Q0DUR2 (Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 6.4e-31
Identity = 76/92 (82.61%), Postives = 85/92 (92.39%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITD+QI+DLVSKLQ LLPE R R +D+V +++VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDEQISDLVSKLQDLLPEARLRSNDRVPSSRVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSD--TAQAAIIRSLLM 91
          +EVDDLSERLSELLATSD  +AQAAIIRSLLM
Sbjct: 61 QEVDDLSERLSELLATSDMSSAQAAIIRSLLM 92

[Close]

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot
Match: Q9CA64 (Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-30
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRS 60
          MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot
Match: Q8GW32 (Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.1e-30
Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSL 60
          MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLATSD--TAQAAIIRSLL 90
          HREVDDLS+RLSELLA++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot
Match: Q338G6 (Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 1.6e-26
Identity = 67/90 (74.44%), Postives = 78/90 (86.67%), Query Frame = 0


Query: 3  SRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLHRE 62
          SRRSRSR S ++RITD+QI DLVSKLQ LLPE R R +D+V +A+VLQETC+YIRSLHRE
Sbjct: 2  SRRSRSRASSAARITDEQIGDLVSKLQALLPEARLRSNDRVPSARVLQETCSYIRSLHRE 61

Query: 63 VDDLSERLSELLATSD--TAQAAIIRSLLM 91
          VDDLSERL+ELLA +D  TAQAA+IR LLM
Sbjct: 62 VDDLSERLAELLAAADVSTAQAAVIRGLLM 91

[Close]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL
Match: A0A6J1C1E4 (transcription factor ILI6-like OS=Momordica charantia OX=3673 GN=LOC111007381 PE=4 SV=1)

HSP 1 Score: 163.7 bits (413), Expect = 3.6e-37
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLSELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL
Match: A0A6J1IDH8 (transcription factor ILI6-like OS=Cucurbita maxima OX=3661 GN=LOC111471611 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL
Match: A0A1S3BWE2 (transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1)

HSP 1 Score: 159.8 bits (403), Expect = 5.2e-36
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSL 60
          MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIR+L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          HREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL
Match: A0A6J1F586 (transcription factor ILI6-like OS=Cucurbita moschata OX=3662 GN=LOC111440959 PE=4 SV=1)

HSP 1 Score: 158.7 bits (400), Expect = 1.2e-35
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIRSLH
Sbjct: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL
Match: A0A6J1JIT1 (transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111484830 PE=4 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 2.0e-35
Identity = 85/91 (93.41%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAAK+LQETCNYI++LH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHSQSDKVSAAKILQETCNYIKNLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLSELLA+SDTAQAAIIR+LLMQ
Sbjct: 61 REVDDLSERLSELLASSDTAQAAIIRNLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. NCBI nr
Match: XP_022135424.1 (transcription factor ILI6-like [Momordica charantia])

HSP 1 Score: 163.7 bits (413), Expect = 7.5e-37
Identity = 90/91 (98.90%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAA VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAANVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLSELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. NCBI nr
Match: XP_038880650.1 (transcription factor PRE3-like [Benincasa hispida])

HSP 1 Score: 162.2 bits (409), Expect = 2.2e-36
Identity = 89/91 (97.80%), Postives = 90/91 (98.90%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRH QSDKVSAAKVLQETCNYIR+LH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHTQSDKVSAAKVLQETCNYIRNLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERLSELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. NCBI nr
Match: XP_008453188.1 (PREDICTED: transcription factor PRE3-like [Cucumis melo])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSR-ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSL 60
          MSSRRSRSRQSGSSR ITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIR+L
Sbjct: 1  MSSRRSRSRQSGSSRSITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          HREVDDLSERLSELLATSDTAQAAIIRSLLMQ
Sbjct: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92

[Close]

BLAST of Lcy03g015140 vs. NCBI nr
Match: XP_022973084.1 (transcription factor ILI6-like [Cucurbita maxima])

HSP 1 Score: 159.8 bits (403), Expect = 1.1e-35
Identity = 88/91 (96.70%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIRSLH
Sbjct: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. NCBI nr
Match: XP_022933575.1 (transcription factor ILI6-like [Cucurbita moschata] >XP_023531918.1 transcription factor ILI6-like [Cucurbita pepo subsp. pepo] >KAG6587530.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021506.1 Transcription factor PRE4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 158.7 bits (400), Expect = 2.4e-35
Identity = 87/91 (95.60%), Postives = 89/91 (97.80%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSLH 60
          MS+RRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDK SAA VLQETCNYIRSLH
Sbjct: 1  MSTRRSRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKSSAAHVLQETCNYIRSLH 60

Query: 61 REVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          REVDDLSERL+ELLATSDTAQAAIIRSLLMQ
Sbjct: 61 REVDDLSERLAELLATSDTAQAAIIRSLLMQ 91

[Close]

BLAST of Lcy03g015140 vs. TAIR 10
Match: AT1G74500.1 (activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 )

HSP 1 Score: 133.7 bits (335), Expect = 7.7e-32
Identity = 76/93 (81.72%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MSSRRSRSRQ-SGSSRITDDQINDLVSKLQQLLPEIR-HRQSDKVSAAKVLQETCNYIRS 60
          MS RRSRSRQ SG+SRI++DQINDL+ KLQQLLPE+R  R+SDKVSAA+VLQ+TCNYIR+
Sbjct: 1  MSGRRSRSRQSSGTSRISEDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRN 60

Query: 61 LHREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
          LHREVDDLSERLSELLA SDTAQAA+IRSLL Q
Sbjct: 61 LHREVDDLSERLSELLANSDTAQAALIRSLLTQ 93

[Close]

BLAST of Lcy03g015140 vs. TAIR 10
Match: AT1G26945.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 131.7 bits (330), Expect = 2.9e-31
Identity = 75/92 (81.52%), Postives = 87/92 (94.57%), Query Frame = 0


Query: 1  MSSRR-SRSRQSGSSRITDDQINDLVSKLQQLLPEIRHRQSDKVSAAKVLQETCNYIRSL 60
          MSSRR SRSRQSGSSRI+DDQI+DLVSKLQ L+PE+R R+SDKVSA+KVLQETCNYIR+L
Sbjct: 1  MSSRRSSRSRQSGSSRISDDQISDLVSKLQHLIPELRRRRSDKVSASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLATSD--TAQAAIIRSLL 90
          HREVDDLS+RLSELLA++D  +A+AAIIRSLL
Sbjct: 61 HREVDDLSDRLSELLASTDDNSAEAAIIRSLL 92

[Close]

BLAST of Lcy03g015140 vs. TAIR 10
Match: AT3G47710.1 (BANQUO 3 )

HSP 1 Score: 118.6 bits (296), Expect = 2.6e-27
Identity = 65/92 (70.65%), Postives = 84/92 (91.30%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRSL 60
          MSSR+SRSRQ+G+S ITD+QINDLV +L +LLPE+  +R+S KVSA++VLQETC+YIR+L
Sbjct: 1  MSSRKSRSRQTGASMITDEQINDLVLQLHRLLPELANNRRSGKVSASRVLQETCSYIRNL 60

Query: 61 HREVDDLSERLSELLATSDTAQAAIIRSLLMQ 92
           +EVDDLSERLS+LL ++D+AQAA+IRSLLMQ
Sbjct: 61 SKEVDDLSERLSQLLESTDSAQAALIRSLLMQ 92

[Close]

BLAST of Lcy03g015140 vs. TAIR 10
Match: AT3G28857.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 106.7 bits (265), Expect = 1.0e-23
Identity = 64/93 (68.82%), Postives = 78/93 (83.87%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRSL 60
          MS+RRSR + S +SRI+DDQ+ DLVSKL+Q LPEI   R+SDKVSA+KVLQETCNYIR L
Sbjct: 1  MSNRRSR-QTSNASRISDDQMIDLVSKLRQFLPEIHERRRSDKVSASKVLQETCNYIRKL 60

Query: 61 HREVDDLSERLSELL--ATSDTAQAAIIRSLLM 91
          HREVD+LS+RLS+LL     D+ +AA+IRSLLM
Sbjct: 61 HREVDNLSDRLSQLLDSVDEDSPEAAVIRSLLM 92

[Close]

BLAST of Lcy03g015140 vs. TAIR 10
Match: AT5G39860.1 (basic helix-loop-helix (bHLH) DNA-binding family protein )

HSP 1 Score: 102.1 bits (253), Expect = 2.5e-22
Identity = 61/93 (65.59%), Postives = 80/93 (86.02%), Query Frame = 0


Query: 1  MSSRRSRSRQSGSSRITDDQINDLVSKLQQLLPEI-RHRQSDKVSAAKVLQETCNYIRSL 60
          MS+RRSR + S + RI+D+Q+ DLVSKL+Q+LPEI + R+SDK SA+KVLQETCNYIR+L
Sbjct: 1  MSNRRSR-QSSSAPRISDNQMIDLVSKLRQILPEIGQRRRSDKASASKVLQETCNYIRNL 60

Query: 61 HREVDDLSERLSELLAT--SDTAQAAIIRSLLM 91
          +REVD+LSERLS+LL +   D+ +AA+IRSLLM
Sbjct: 61 NREVDNLSERLSQLLESVDEDSPEAAVIRSLLM 92

The following BLAST results are available for this feature:

BLAST of Lcy03g015140 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
B8APB5	6.4e-31	82.61	Transcription factor ILI6 OS=Oryza sativa subsp. indica OX=39946 GN=ILI6 PE=3 SV...	[more]
Q0DUR2	6.4e-31	82.61	Transcription factor ILI6 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI6 PE=1 ...	[more]
Q9CA64	1.1e-30	81.72	Transcription factor PRE3 OS=Arabidopsis thaliana OX=3702 GN=PRE3 PE=1 SV=1	[more]
Q8GW32	4.1e-30	81.52	Transcription factor PRE6 OS=Arabidopsis thaliana OX=3702 GN=PRE6 PE=1 SV=1	[more]
Q338G6	1.6e-26	74.44	Transcription factor ILI7 OS=Oryza sativa subsp. japonica OX=39947 GN=ILI7 PE=3 ...	[more]

BLAST of Lcy03g015140 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1C1E4	3.6e-37	98.90	transcription factor ILI6-like OS=Momordica charantia OX=3673 GN=LOC111007381 PE...	[more]
A0A6J1IDH8	5.2e-36	96.70	transcription factor ILI6-like OS=Cucurbita maxima OX=3661 GN=LOC111471611 PE=4 ...	[more]
A0A1S3BWE2	5.2e-36	97.83	transcription factor PRE3-like OS=Cucumis melo OX=3656 GN=LOC103493979 PE=4 SV=1	[more]
A0A6J1F586	1.2e-35	95.60	transcription factor ILI6-like OS=Cucurbita moschata OX=3662 GN=LOC111440959 PE=...	[more]
A0A6J1JIT1	2.0e-35	93.41	transcription factor PRE3-like OS=Cucurbita maxima OX=3661 GN=LOC111484830 PE=4 ...	[more]

BLAST of Lcy03g015140 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022135424.1	7.5e-37	98.90	transcription factor ILI6-like [Momordica charantia]	[more]
XP_038880650.1	2.2e-36	97.80	transcription factor PRE3-like [Benincasa hispida]	[more]
XP_008453188.1	1.1e-35	97.83	PREDICTED: transcription factor PRE3-like [Cucumis melo]	[more]
XP_022973084.1	1.1e-35	96.70	transcription factor ILI6-like [Cucurbita maxima]	[more]
XP_022933575.1	2.4e-35	95.60	transcription factor ILI6-like [Cucurbita moschata] >XP_023531918.1 transcriptio...	[more]

BLAST of Lcy03g015140 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G74500.1	7.7e-32	81.72	activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1	[more]
AT1G26945.1	2.9e-31	81.52	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	[more]
AT3G47710.1	2.6e-27	70.65	BANQUO 3	[more]
AT3G28857.1	1.0e-23	68.82	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]
AT5G39860.1	2.5e-22	65.59	basic helix-loop-helix (bHLH) DNA-binding family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 56..83
None	No IPR available	PANTHER	PTHR46446:SF3	TRANSCRIPTION FACTOR PRE3	coord: 1..90
None	No IPR available	CDD	cd11442	bHLH_AtPRE_like	coord: 16..76 e-value: 2.82399E-21 score: 77.3435
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PFAM	PF00010	HLH	coord: 19..60 e-value: 1.6E-7 score: 31.2
IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain	PROSITE	PS50888	BHLH	coord: 5..59 score: 11.39471
IPR036638	Helix-loop-helix DNA-binding domain superfamily	GENE3D	4.10.280.10		coord: 6..87 e-value: 1.0E-10 score: 43.6
IPR036638	Helix-loop-helix DNA-binding domain superfamily	SUPERFAMILY	47459	HLH, helix-loop-helix DNA-binding domain	coord: 19..77
IPR044293	Transcription factor PRE	PANTHER	PTHR46446	TRANSCRIPTION FACTOR PRE	coord: 1..90

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g015140.1	Lcy03g015140.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0040008	regulation of growth
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0046983	protein dimerization activity