Lcy03g012840 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g012840
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent RNA helicase DDX11-like protein
Location	Chr03: 46755546 .. 46756438 (+)
RNA-Seq Expression	Lcy03g012840
Synteny	Lcy03g012840

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TACACACATTGTCTTCTTCTTCTTTTCTCTCTTCACACCAAATAAAACAAATCCAAACTCACTCACTCCAAAACCCCAATGTTGCTACGATCCTCCATTTCCACCACCAAAAAATTCTTCAAAAAAACCTTATGTAACTTCAAATCTTTCTTCTCCAACAGCTACCACCGCCTGCCCAAGGCGGCGCCGCCCTTCGCCGCCGGCCCCGACATGGACAAAGACTCAACCTTTCACTTCATTTCATCCCAAAAAGAGGTCAAAAATGGAAGCTTTATGAAGAACAGCAATGGTTTGGCTAATTCAGTCCATTTCTCGAAGACGATCGACGAGACCCAGATGGAAAGAGTCGAGAAAAATCAACAGAGCATCAGAATTCGAGCGACCCATCAAAGGAAAACGCAAGAAAATTGCGAATCCAGTTCGAAGAATTCTACTTTGAATCAGTACGACGAGAGGAGAATGTGTTTGGTTGCCAAGAAAATTAAAGAGTTGGAAAAACTAGACGCGAGAAATGTGGATCATACTTTGGATATTGAGGAGGTTCTTCATTACTACTCTCGTCTCACTTGTCCAACATATCTTGAAATCGTGGACAAATTCTTCATGGAGATTTTTGCTGAATTTTGTTCTAATCATTCTTCTTCTCAACAAAATTGCACTGTAAAATCCAGGCGAATTGGGTCGGAATCGGTGGGTTTAGAGAGAAGAAAATCTCGTTTGGGAAATTTGGAGCCTTCGTCCTCTGATTTCTTCTAGACCATGCATATTCCTTTAGTTTCATTTTTCGTACGTTGTAATGAAATTTGATTCGGTGTTTATGATTCATCTCGGTTCATAAATTTCATGGTAGGGTCGTTTCGTTTGTGTAACATAGTTTAATTTGAATGTCTATG

mRNA sequence

TACACACATTGTCTTCTTCTTCTTTTCTCTCTTCACACCAAATAAAACAAATCCAAACTCACTCACTCCAAAACCCCAATGTTGCTACGATCCTCCATTTCCACCACCAAAAAATTCTTCAAAAAAACCTTATGTAACTTCAAATCTTTCTTCTCCAACAGCTACCACCGCCTGCCCAAGGCGGCGCCGCCCTTCGCCGCCGGCCCCGACATGGACAAAGACTCAACCTTTCACTTCATTTCATCCCAAAAAGAGGTCAAAAATGGAAGCTTTATGAAGAACAGCAATGGTTTGGCTAATTCAGTCCATTTCTCGAAGACGATCGACGAGACCCAGATGGAAAGAGTCGAGAAAAATCAACAGAGCATCAGAATTCGAGCGACCCATCAAAGGAAAACGCAAGAAAATTGCGAATCCAGTTCGAAGAATTCTACTTTGAATCAGTACGACGAGAGGAGAATGTGTTTGGTTGCCAAGAAAATTAAAGAGTTGGAAAAACTAGACGCGAGAAATGTGGATCATACTTTGGATATTGAGGAGGTTCTTCATTACTACTCTCGTCTCACTTGTCCAACATATCTTGAAATCGTGGACAAATTCTTCATGGAGATTTTTGCTGAATTTTGTTCTAATCATTCTTCTTCTCAACAAAATTGCACTGTAAAATCCAGGCGAATTGGGTCGGAATCGGTGGGTTTAGAGAGAAGAAAATCTCGTTTGGGAAATTTGGAGCCTTCGTCCTCTGATTTCTTCTAGACCATGCATATTCCTTTAGTTTCATTTTTCGTACGTTGTAATGAAATTTGATTCGGTGTTTATGATTCATCTCGGTTCATAAATTTCATGGTAGGGTCGTTTCGTTTGTGTAACATAGTTTAATTTGAATGTCTATG

Coding sequence (CDS)

ATGTTGCTACGATCCTCCATTTCCACCACCAAAAAATTCTTCAAAAAAACCTTATGTAACTTCAAATCTTTCTTCTCCAACAGCTACCACCGCCTGCCCAAGGCGGCGCCGCCCTTCGCCGCCGGCCCCGACATGGACAAAGACTCAACCTTTCACTTCATTTCATCCCAAAAAGAGGTCAAAAATGGAAGCTTTATGAAGAACAGCAATGGTTTGGCTAATTCAGTCCATTTCTCGAAGACGATCGACGAGACCCAGATGGAAAGAGTCGAGAAAAATCAACAGAGCATCAGAATTCGAGCGACCCATCAAAGGAAAACGCAAGAAAATTGCGAATCCAGTTCGAAGAATTCTACTTTGAATCAGTACGACGAGAGGAGAATGTGTTTGGTTGCCAAGAAAATTAAAGAGTTGGAAAAACTAGACGCGAGAAATGTGGATCATACTTTGGATATTGAGGAGGTTCTTCATTACTACTCTCGTCTCACTTGTCCAACATATCTTGAAATCGTGGACAAATTCTTCATGGAGATTTTTGCTGAATTTTGTTCTAATCATTCTTCTTCTCAACAAAATTGCACTGTAAAATCCAGGCGAATTGGGTCGGAATCGGTGGGTTTAGAGAGAAGAAAATCTCGTTTGGGAAATTTGGAGCCTTCGTCCTCTGATTTCTTCTAG

Protein sequence

MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEVKNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTLNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFAEFCSNHSSSQQNCTVKSRRIGSESVGLERRKSRLGNLEPSSSDFF

Homology

[Close]

BLAST of Lcy03g012840 vs. ExPASy TrEMBL
Match: A0A6J1IF62 (uncharacterized protein LOC111472233 OS=Cucurbita maxima OX=3661 GN=LOC111472233 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 1.8e-69
Identity = 148/193 (76.68%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           M L  SISTTKKFFKKT+CNFKSFFSN+YHRLPKAAPPF AGP+M KD          EV
Sbjct: 39  MFLLPSISTTKKFFKKTICNFKSFFSNTYHRLPKAAPPFTAGPEMAKD----------EV 98

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNS-T 120
           +NGSF K SNG  N+VHFSKTID+TQM+RVEKN+QSI+I ATHQRK+QEN ES SK S  
Sbjct: 99  QNGSFTK-SNG-NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKSQENRESRSKRSRR 158

Query: 121 LNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIF 180
           L +YDERR+CLVAKKIKELEKLDARNVDH+LDIEE+LHYYSRLTCPTYLEIVD FFM++F
Sbjct: 159 LYEYDERRVCLVAKKIKELEKLDARNVDHSLDIEEILHYYSRLTCPTYLEIVDTFFMDMF 218

Query: 181 AEFCSNHSSSQQN 193
           AEFCSN SSSQ N
Sbjct: 219 AEFCSNSSSSQHN 219

[Close]

BLAST of Lcy03g012840 vs. ExPASy TrEMBL
Match: A0A6J1H9I9 (uncharacterized protein LOC111461329 OS=Cucurbita moschata OX=3662 GN=LOC111461329 PE=4 SV=1)

HSP 1 Score: 268.5 bits (685), Expect = 2.6e-68
Identity = 152/225 (67.56%), Postives = 172/225 (76.44%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           M+LR+SI+ TKKFF KTLCNFKSFFSN+Y RLPKA PPF+ G +MDKDS           
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSNTYQRLPKAPPPFSIGHEMDKDS----------- 60

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTL 120
              SFMKNSNG  N+V FSKT+DETQM++VEKN+ SI+I  THQRKTQEN         L
Sbjct: 61  ---SFMKNSNG--NAVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQEN---------L 120

Query: 121 NQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFA 180
            +YDERRMCLVAKK+KELEKLDAR+VDH LDIEE+LHYYSRL+CPTYLEIVDKFFM+IFA
Sbjct: 121 KEYDERRMCLVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFA 180

Query: 181 EFCSNHSSSQQNCTVKSRRIGSE-SVGLERRKSRLGNLEPSSSDF 225
           EFC+N SS Q N       IG E SVGL RRKSRLG +E SSS F
Sbjct: 181 EFCANSSSQQTN------PIGKESSVGLVRRKSRLGKVESSSSYF 194

[Close]

BLAST of Lcy03g012840 vs. ExPASy TrEMBL
Match: A0A6J1F4Y2 (uncharacterized protein LOC111440909 OS=Cucurbita moschata OX=3662 GN=LOC111440909 PE=4 SV=1)

HSP 1 Score: 266.5 bits (680), Expect = 9.8e-68
Identity = 148/194 (76.29%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKA-APPFAAGPDMDKDSTFHFISSQKE 60
           M L  SISTTKKFF+KTLCNFKSFFSN+YHRLPKA  PPF AGP+M KD          E
Sbjct: 1   MFLLPSISTTKKFFQKTLCNFKSFFSNTYHRLPKAPPPPFTAGPEMAKD----------E 60

Query: 61  VKNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNST 120
           V+NGSF K SNG  N+VHFSKTID+TQM+RVEKN+QSI+I ATHQRKTQEN ES SK S+
Sbjct: 61  VQNGSFTK-SNG-NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKTQENRESRSKRSS 120

Query: 121 -LNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEI 180
            L +YDERR+CLVAKKIKELEKLDARNV H+LDIEE+LHYYSRLTCPTYLEIVD FFM++
Sbjct: 121 RLYEYDERRVCLVAKKIKELEKLDARNVHHSLDIEEILHYYSRLTCPTYLEIVDTFFMDM 180

Query: 181 FAEFCSNHSSSQQN 193
           FAEFCSN SSSQQN
Sbjct: 181 FAEFCSNSSSSQQN 182

[Close]

BLAST of Lcy03g012840 vs. ExPASy TrEMBL
Match: A0A6J1CV44 (uncharacterized protein LOC111014544 OS=Momordica charantia OX=3673 GN=LOC111014544 PE=4 SV=1)

HSP 1 Score: 260.4 bits (664), Expect = 7.0e-66
Identity = 150/228 (65.79%), Postives = 175/228 (76.75%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           MLLR+SIS TKKFFKKT+CNFKSFFS SYHRLPK  PPFAAGP M+KDSTF FISSQKEV
Sbjct: 1   MLLRASISNTKKFFKKTICNFKSFFSTSYHRLPKTPPPFAAGPRMEKDSTFQFISSQKEV 60

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQME--RVEKNQQSI-RIRATHQRKTQENCESSSKN 120
           ++G FMKN+   +N++HF   ++ETQME   V+K+  S+  I ATHQRK QEN +  S +
Sbjct: 61  QSGGFMKNN---SNALHFPNKMEETQMEIRVVDKSYGSMNNIGATHQRKRQENRDRESSS 120

Query: 121 STLNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFME 180
             +   DERRMCLVAKKIKELEKLD+RNVDH LDIEE+LHYYSRLTCP YLEIVDKFF E
Sbjct: 121 KYI--IDERRMCLVAKKIKELEKLDSRNVDHALDIEEILHYYSRLTCPAYLEIVDKFFTE 180

Query: 181 IFAEFCSNHSSSQQNCTVKSRRIGSESVGLERRKSRLGNLEPSSSDFF 226
           IFAEF +N SSSQ   T+K R I  +SVGL +R+         +SDFF
Sbjct: 181 IFAEFSAN-SSSQPCHTIKPRLIRPQSVGLVKRR---------TSDFF 213

[Close]

BLAST of Lcy03g012840 vs. ExPASy TrEMBL
Match: A0A6J1JFL9 (uncharacterized protein LOC111485292 OS=Cucurbita maxima OX=3661 GN=LOC111485292 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 4.7e-62
Identity = 146/221 (66.06%), Postives = 164/221 (74.21%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           M+LR+SIS+TKKFF KTLCNFKSFFSN+Y RLPK          MDKDS           
Sbjct: 1   MMLRASISSTKKFFNKTLCNFKSFFSNTYQRLPK----------MDKDS----------- 60

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTL 120
              SFMKNSNG  N+VHFSKTI ETQM++VEKN+ SI+I ATHQRKTQEN         L
Sbjct: 61  ---SFMKNSNG--NAVHFSKTIRETQMKKVEKNEDSIKIGATHQRKTQEN---------L 120

Query: 121 NQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFA 180
             YDERRMCLVAKK+KELEKLDAR+VDH LDIEE+LHYYSRL+CPTYL+IVDKFFM+IFA
Sbjct: 121 KVYDERRMCLVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLQIVDKFFMDIFA 180

Query: 181 EFCSNHSSSQQNCTVKSRRIGSE-SVGLERRKSRLGNLEPS 221
           EFC+N SS Q N       IG + SVGL RRKSRLGN+E S
Sbjct: 181 EFCANPSSQQTN------PIGHQSSVGLVRRKSRLGNVESS 180

[Close]

BLAST of Lcy03g012840 vs. NCBI nr
Match: XP_022973644.1 (uncharacterized protein LOC111472233 [Cucurbita maxima])

HSP 1 Score: 272.3 bits (695), Expect = 3.7e-69
Identity = 148/193 (76.68%), Postives = 164/193 (84.97%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           M L  SISTTKKFFKKT+CNFKSFFSN+YHRLPKAAPPF AGP+M KD          EV
Sbjct: 39  MFLLPSISTTKKFFKKTICNFKSFFSNTYHRLPKAAPPFTAGPEMAKD----------EV 98

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNS-T 120
           +NGSF K SNG  N+VHFSKTID+TQM+RVEKN+QSI+I ATHQRK+QEN ES SK S  
Sbjct: 99  QNGSFTK-SNG-NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKSQENRESRSKRSRR 158

Query: 121 LNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIF 180
           L +YDERR+CLVAKKIKELEKLDARNVDH+LDIEE+LHYYSRLTCPTYLEIVD FFM++F
Sbjct: 159 LYEYDERRVCLVAKKIKELEKLDARNVDHSLDIEEILHYYSRLTCPTYLEIVDTFFMDMF 218

Query: 181 AEFCSNHSSSQQN 193
           AEFCSN SSSQ N
Sbjct: 219 AEFCSNSSSSQHN 219

[Close]

BLAST of Lcy03g012840 vs. NCBI nr
Match: XP_023515883.1 (uncharacterized protein LOC111779922 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 270.4 bits (690), Expect = 1.4e-68
Identity = 154/224 (68.75%), Postives = 172/224 (76.79%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           MLLR+SIS TKKFF KTLCN KSFFSN+Y RLPKAAPPF+ G +MDKDS           
Sbjct: 1   MLLRASISNTKKFFNKTLCNIKSFFSNTYQRLPKAAPPFSIGHEMDKDS----------- 60

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTL 120
              SFMKNSNG  N+VHFSKTIDETQM++VEKN+ SI+I  THQRKTQEN         L
Sbjct: 61  ---SFMKNSNG--NAVHFSKTIDETQMKKVEKNEDSIKIGVTHQRKTQEN---------L 120

Query: 121 NQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFA 180
            +YDERRMC VAKK+KELEKLDAR+VDH LDIEE+LHYYSRL+CPTYLEIVDKFFM+IFA
Sbjct: 121 KEYDERRMCSVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFA 180

Query: 181 EFCSNHSSSQQNCTVKSRRIGSE-SVGLERRKSRLGNLEPSSSD 224
           EFC+N SS Q N       IG E S GL RRKSRLGN+E SSS+
Sbjct: 181 EFCANPSSQQIN------PIGHESSAGLVRRKSRLGNVESSSSN 193

[Close]

BLAST of Lcy03g012840 vs. NCBI nr
Match: KAG6587958.1 (hypothetical protein SDJN03_16523, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021847.1 hypothetical protein SDJN02_15575, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 269.6 bits (688), Expect = 2.4e-68
Identity = 149/194 (76.80%), Postives = 165/194 (85.05%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKA-APPFAAGPDMDKDSTFHFISSQKE 60
           M L  SISTTKKFFKKTLCNFKSFFSN+YHRLPKA  PPF AGP+M KD          +
Sbjct: 1   MFLLPSISTTKKFFKKTLCNFKSFFSNTYHRLPKAPPPPFTAGPEMAKD----------D 60

Query: 61  VKNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNST 120
           V+NGSF K SNG  N+VHFSKTID+TQM+RVEKN+QSI+I ATHQRKTQEN ES SK S+
Sbjct: 61  VQNGSFTK-SNG-NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKTQENRESRSKRSS 120

Query: 121 -LNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEI 180
            L +YDERR+CLVAKKIKELEKLDARNVDH+LDIEE+LHYYSRLTCPTYLEIVD FFM++
Sbjct: 121 RLYEYDERRVCLVAKKIKELEKLDARNVDHSLDIEEILHYYSRLTCPTYLEIVDTFFMDM 180

Query: 181 FAEFCSNHSSSQQN 193
           FAEFCSN SSSQQN
Sbjct: 181 FAEFCSNSSSSQQN 182

[Close]

BLAST of Lcy03g012840 vs. NCBI nr
Match: XP_022960595.1 (uncharacterized protein LOC111461329 [Cucurbita moschata])

HSP 1 Score: 268.5 bits (685), Expect = 5.3e-68
Identity = 152/225 (67.56%), Postives = 172/225 (76.44%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEV 60
           M+LR+SI+ TKKFF KTLCNFKSFFSN+Y RLPKA PPF+ G +MDKDS           
Sbjct: 1   MMLRASIANTKKFFNKTLCNFKSFFSNTYQRLPKAPPPFSIGHEMDKDS----------- 60

Query: 61  KNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTL 120
              SFMKNSNG  N+V FSKT+DETQM++VEKN+ SI+I  THQRKTQEN         L
Sbjct: 61  ---SFMKNSNG--NAVRFSKTMDETQMKKVEKNEDSIKIGVTHQRKTQEN---------L 120

Query: 121 NQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFA 180
            +YDERRMCLVAKK+KELEKLDAR+VDH LDIEE+LHYYSRL+CPTYLEIVDKFFM+IFA
Sbjct: 121 KEYDERRMCLVAKKMKELEKLDARDVDHALDIEEILHYYSRLSCPTYLEIVDKFFMDIFA 180

Query: 181 EFCSNHSSSQQNCTVKSRRIGSE-SVGLERRKSRLGNLEPSSSDF 225
           EFC+N SS Q N       IG E SVGL RRKSRLG +E SSS F
Sbjct: 181 EFCANSSSQQTN------PIGKESSVGLVRRKSRLGKVESSSSYF 194

[Close]

BLAST of Lcy03g012840 vs. NCBI nr
Match: XP_022933508.1 (uncharacterized protein LOC111440909 [Cucurbita moschata])

HSP 1 Score: 266.5 bits (680), Expect = 2.0e-67
Identity = 148/194 (76.29%), Postives = 164/194 (84.54%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSNSYHRLPKA-APPFAAGPDMDKDSTFHFISSQKE 60
           M L  SISTTKKFF+KTLCNFKSFFSN+YHRLPKA  PPF AGP+M KD          E
Sbjct: 1   MFLLPSISTTKKFFQKTLCNFKSFFSNTYHRLPKAPPPPFTAGPEMAKD----------E 60

Query: 61  VKNGSFMKNSNGLANSVHFSKTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNST 120
           V+NGSF K SNG  N+VHFSKTID+TQM+RVEKN+QSI+I ATHQRKTQEN ES SK S+
Sbjct: 61  VQNGSFTK-SNG-NNAVHFSKTIDKTQMDRVEKNEQSIKIGATHQRKTQENRESRSKRSS 120

Query: 121 -LNQYDERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEI 180
            L +YDERR+CLVAKKIKELEKLDARNV H+LDIEE+LHYYSRLTCPTYLEIVD FFM++
Sbjct: 121 RLYEYDERRVCLVAKKIKELEKLDARNVHHSLDIEEILHYYSRLTCPTYLEIVDTFFMDM 180

Query: 181 FAEFCSNHSSSQQN 193
           FAEFCSN SSSQQN
Sbjct: 181 FAEFCSNSSSSQQN 182

[Close]

BLAST of Lcy03g012840 vs. TAIR 10
Match: AT3G24535.1 (unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 69.7 bits (169), Expect = 3.4e-12
Identity = 58/193 (30.05%), Postives = 93/193 (48.19%), Query Frame = 0


Query: 1   MLLRSSISTTKKFFKKTLCNFKSFFSN--SYHRLPKAAPPFAAGPDMDKDSTFHFISSQK 60
           M+LRSSIS T+K F+KT+ NFKSFF N  +YH+LPK                        
Sbjct: 1   MVLRSSISNTRKLFQKTIDNFKSFFFNNGTYHKLPKTP---------------------- 60

Query: 61  EVKNGSFMKNSNGLANSVHFSKTIDETQMERVEKN-QQSIRIRATHQRKTQENCESSSKN 120
                    N++   N+ H +  I  +    + K  Q   +   T  + +        ++
Sbjct: 61  --------NNTSTNINNDHPNSNIITSSSSSIHKQFQPKPKDYVTTNKASSLQPRIGDRD 120

Query: 121 STLNQYDERRMCLVAKKIKELEKLDARNV----DHTLDIEEVLHYYSRLTCPTYLEIVDK 180
            TL  + + ++ LV  K+KE+EK+   ++     +  D+ E LH YSRL    YL++V+ 
Sbjct: 121 ETL--FSQPKVNLVRTKLKEMEKMMNDDIISDEYYVSDVIEFLHCYSRLRYTAYLDVVEN 161

Query: 181 FFMEIFAEFCSNH 187
           FFME++++F S H
Sbjct: 181 FFMEVYSDFFSPH 161

[Close]

BLAST of Lcy03g012840 vs. TAIR 10
Match: AT3G16070.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G15260.1); Has 26 Blast hits to 26 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 3.5e-09
Identity = 45/172 (26.16%), Postives = 80/172 (46.51%), Query Frame = 0


Query: 10  TKKFFKKTLCNFKSFFSNSYHRLPKAAPPFAAGPDMDKDSTFHFISSQKEVKNGSFMKNS 69
           T  FF +TL + KS    +  +LP+    F+                       +F +++
Sbjct: 5   TNSFFHRTLHSLKSIIIRAGKKLPRPKTHFSC----------------------TFCRSN 64

Query: 70  NGLANSVHFS-KTIDETQMERVEKNQQSIRIRATHQRKTQENCESSSKNSTLNQYDERRM 129
           +   ++++ S   I E+ +E    N     ++  H+ + QE      K    + Y  R  
Sbjct: 65  SLDGDNIYASFLNIWESDLE----NSIEGPLKLEHKVQEQEQYHQVKKTEACSSYSSRDC 124

Query: 130 CLVAKKIKELEKLDARNVDHTLDIEEVLHYYSRLTCPTYLEIVDKFFMEIFA 181
             + KKI E+   +  +++  LD+EE LHYYSR++ P YL IVDKFF ++++
Sbjct: 125 DTMEKKINEMYMTETVDIEQALDVEEALHYYSRISSPVYLNIVDKFFTDLYS 150

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BLAST of Lcy03g012840 vs. TAIR 10
Match: AT1G15260.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G16070.1); Has 28 Blast hits to 28 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 57.8 bits (138), Expect = 1.3e-08
Identity = 33/92 (35.87%), Postives = 52/92 (56.52%), Query Frame = 0


Query: 102 THQRKTQENCESSSKNSTLNQYD-ERRMCLVAKKIKELEKLDARNVDHTLDIEEVLHYYS 161
           THQ+      +   K       D ++R   +A+K+K+L  +D R+VDH LD+ E L  YS
Sbjct: 76  THQKSLNNQHKKKPKKVAEPFEDAKKRGDALAQKMKDLNMVDLRDVDHALDVREALRCYS 135

Query: 162 RLTCPTYLEIVDKFFMEIFAEFCSNHSSSQQN 193
            +  P YL+IVD FF +++ EF    +S++ N
Sbjct: 136 SIRSPVYLDIVDNFFTDMYYEFSDPRTSAKIN 167

The following BLAST results are available for this feature:

BLAST of Lcy03g012840 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g012840 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1IF62	1.8e-69	76.68	uncharacterized protein LOC111472233 OS=Cucurbita maxima OX=3661 GN=LOC111472233...	[more]
A0A6J1H9I9	2.6e-68	67.56	uncharacterized protein LOC111461329 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A6J1F4Y2	9.8e-68	76.29	uncharacterized protein LOC111440909 OS=Cucurbita moschata OX=3662 GN=LOC1114409...	[more]
A0A6J1CV44	7.0e-66	65.79	uncharacterized protein LOC111014544 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1JFL9	4.7e-62	66.06	uncharacterized protein LOC111485292 OS=Cucurbita maxima OX=3661 GN=LOC111485292...	[more]

BLAST of Lcy03g012840 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022973644.1	3.7e-69	76.68	uncharacterized protein LOC111472233 [Cucurbita maxima]	[more]
XP_023515883.1	1.4e-68	68.75	uncharacterized protein LOC111779922 [Cucurbita pepo subsp. pepo]	[more]
KAG6587958.1	2.4e-68	76.80	hypothetical protein SDJN03_16523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022960595.1	5.3e-68	67.56	uncharacterized protein LOC111461329 [Cucurbita moschata]	[more]
XP_022933508.1	2.0e-67	76.29	uncharacterized protein LOC111440909 [Cucurbita moschata]	[more]

BLAST of Lcy03g012840 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G24535.1	3.4e-12	30.05	unknown protein; Has 28 Blast hits to 27 proteins in 8 species: Archae - 0; Bact...	[more]
AT3G16070.1	3.5e-09	26.16	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G15260.1	1.3e-08	35.87	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35461:SF3	BNAANNG14610D PROTEIN	coord: 1..198
None	No IPR available	PANTHER	PTHR35461	BNAANNG14610D PROTEIN	coord: 1..198

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g012840.1	Lcy03g012840.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane