Lcy03g009990 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g009990
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DNA (Cytosine-5)-methyltransferase CMT3-like
Location	Chr03: 43607290 .. 43608717 (+)
RNA-Seq Expression	Lcy03g009990
Synteny	Lcy03g009990

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCTTCACACTTCACCTCTTTAAGTACACAATCTCTCCCACCCCTAAAGAAACATCAAAACAAGACCCTTTAACCTTTTCTCCTTATGGCTGCATATAGCAGATCAGGCACTTCTTCCAGCTTGAGCTTCTCAGAGCAATGGCTTCTTGCTACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCATTTACGACGCCGCCGTCGCCTCGGCCTCGGAGGTGTTCCAGAGGCTGGTCATCGTCTCGCCGCTGCTTTTGGTCGTCGCCGTCCACTGGCTGTCCCTCGGCAGCGGCTGCGGTGGCGGCGGATATTACAGTAGCCACAGCCACAACCAGGCGGCTGTGGGGTTCCCATGGGGTGTTGGATTCCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTCTGCTGCTTCTGCTTTATTTCTTCTTTCTCACCAACTGAATCTCATCTCCCCCTTCCATTTGTAAGTTTCCGTTATAAGTAAAATCTCATCGGCTCGATATATGTTTTAGTCCTTAATGTTTGAGTATTTTTTCAATTTAGTCCAACGGTTGGTATCGGTACATGTGAAAATTGTTTTTTTTTTTCAACAAACTGCTCGAGTTTTCGCCCCACTTGCTTCTTAATTACTTACCCAAATCGTGACGAGGGACTAAAGAAAAATGTTAAAACAAAAGAGACTAAAACATGCATTAATCCACCTCAAATCCTGTTCTTTCTAGATTTGCAAATTGCCAATGTTAGTACATTTCTCTTTGGGGAGTGATTTCTTGCAATTATCAGTACATTTCTGTTCTGATCTGATCTCCCCTTCTCTCTCTCTCTCTTGTAATTTTAACTGTAAAAACTCTTCCTTTTTCTTCTCTTTCTCTCTCTTGGAGGTTGCCATTGTCAGAAAGTTTCTCTCTCTGTTGTTTTAATTTGCAAAGGGGCCCTTTATCAGTACATTTCTGATCACCCTTTCTCTCTCTCTGTTTAACTTGTAGGATGCCATTGCAGGGCATTTCTGACAATTCACACTTGGTTGTGTTTATCGACAGACGACTCAAACCTTTGATCAGGAGGTCAAGAGTACATACCAATTACCGTTGAGCTATGCTCTTTGGCGTCTGACTTGTCAAGTTAAAAATGAGGTCAAGTTCTTGTGTGGTACCGTATTGTTGTAGATCAATGGTTATTATTGTAAATTTCTGATGGAAGAATATATAAGAAAAATTACTCGAACCCATCTCTTTGGTTTTGTGAATTTCCATACGCAACATTCGAAGATTTGGGGAAAGTTTTAGTGCAAGGAGTAAGGAGTAGTTACGTATTGGTGTCTTTTCTAATTGATGATTGTAGGTTTGAATCTCTTCTCTGTATTATAACGTTGTAAAAAGTAAGCATCTATGTTATTAGAGGATATATATATTTCTCTT

mRNA sequence

TTCTTCACACTTCACCTCTTTAAGTACACAATCTCTCCCACCCCTAAAGAAACATCAAAACAAGACCCTTTAACCTTTTCTCCTTATGGCTGCATATAGCAGATCAGGCACTTCTTCCAGCTTGAGCTTCTCAGAGCAATGGCTTCTTGCTACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCATTTACGACGCCGCCGTCGCCTCGGCCTCGGAGGTGTTCCAGAGGCTGGTCATCGTCTCGCCGCTGCTTTTGGTCGTCGCCGTCCACTGGCTGTCCCTCGGCAGCGGCTGCGGTGGCGGCGGATATTACAGTAGCCACAGCCACAACCAGGCGGCTGTGGGGTTCCCATGGGGTGTTGGATTCCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTCTGCTGCTTCTGCTTTATTTCTTCTTTCTCACCAACTGAATCTCATCTCCCCCTTCCATTTGATGCCATTGCAGGGCATTTCTGACAATTCACACTTGGTTGTGTTTATCGACAGACGACTCAAACCTTTGATCAGGAGGTCAAGAGTACATACCAATTACCGTTGAGCTATGCTCTTTGGCGTCTGACTTGTCAAGTTAAAAATGAGGTCAAGTTCTTGTGTGGTACCGTATTGTTGTAGATCAATGGTTATTATTGTAAATTTCTGATGGAAGAATATATAAGAAAAATTACTCGAACCCATCTCTTTGGTTTTGTGAATTTCCATACGCAACATTCGAAGATTTGGGGAAAGTTTTAGTGCAAGGAGTAAGGAGTAGTTACGTATTGGTGTCTTTTCTAATTGATGATTGTAGGTTTGAATCTCTTCTCTGTATTATAACGTTGTAAAAAGTAAGCATCTATGTTATTAGAGGATATATATATTTCTCTT

Coding sequence (CDS)

ATGGCTGCATATAGCAGATCAGGCACTTCTTCCAGCTTGAGCTTCTCAGAGCAATGGCTTCTTGCTACCATTGCTCTTATAATCTTTGGATTCTTGGCTTATGCCATTTACGACGCCGCCGTCGCCTCGGCCTCGGAGGTGTTCCAGAGGCTGGTCATCGTCTCGCCGCTGCTTTTGGTCGTCGCCGTCCACTGGCTGTCCCTCGGCAGCGGCTGCGGTGGCGGCGGATATTACAGTAGCCACAGCCACAACCAGGCGGCTGTGGGGTTCCCATGGGGTGTTGGATTCCTTCTGCTTTTGCTTCTGTTTCCTTGGAGTGCTGCCATTCTGCTGCTTCTGCTTTATTTCTTCTTTCTCACCAACTGA

Protein sequence

MAAYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN

Homology

[Close]

BLAST of Lcy03g009990 vs. ExPASy TrEMBL
Match: A0A5A7TFN5 (DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1121G00430 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 10  SSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLG 69
           SSSLSFS+QWLLATIALIIFGFLAYA+YDAAVASASEVFQRLV+VSPLLLVVAVHWLSLG
Sbjct: 7   SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66

Query: 70  SGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 122
                GGY ++HS    AVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 67  R---DGGYNNNHS----AVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of Lcy03g009990 vs. ExPASy TrEMBL
Match: A0A0A0M2K2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 1.3e-37
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 10  SSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLG 69
           SSSLSFS+QWLLATIALIIFGFLAYA+YDAAVASASEVFQRLV+VSPLLLVVAVHWLSLG
Sbjct: 7   SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66

Query: 70  SGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 122
                GGY ++HS    AVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 67  R---DGGYNNNHS----AVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of Lcy03g009990 vs. ExPASy TrEMBL
Match: A0A6J1DUA1 (uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024080 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.4e-33
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MAAYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLV 60
           MAA +RSG       SEQWLLAT+ALI FGFLAYAIYDAAVAS +E+FQR+V+VSPLLLV
Sbjct: 1   MAAPTRSGG------SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLV 60

Query: 61  VAVHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLT 120
           VAVHWLS+G G  G G        QAAVGFPWGVG LLLL+LFPWSAA+LLLLLYFFFLT
Sbjct: 61  VAVHWLSIGGGSSGCG-------TQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLT 108

Query: 121 N 122
           N
Sbjct: 121 N 108

[Close]

BLAST of Lcy03g009990 vs. ExPASy TrEMBL
Match: A0A444ZSA4 (Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.2e-15
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 3   AYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVA 62
           AYS + +SS  SFSE WL+   + +I GFL Y +YDA +A+ASE+ QRL+++SPLLL++ 
Sbjct: 95  AYSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIV 154

Query: 63  VHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLF 104
           VHWLS GS        S       A G PWGV F+LLLL F
Sbjct: 155 VHWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 195

[Close]

BLAST of Lcy03g009990 vs. ExPASy TrEMBL
Match: A0A6P4D1L0 (uncharacterized protein LOC107481931 OS=Arachis duranensis OX=130453 GN=LOC107481931 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 5.2e-15
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 3   AYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVA 62
           AYS + +SS  SFSE WL+   + +I GFL Y +YDA +A+ASE+ QRL+++SPLLL++ 
Sbjct: 37  AYSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIV 96

Query: 63  VHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLF 104
           VHWLS GS        S       A G PWGV F+LLLL F
Sbjct: 97  VHWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 137

[Close]

BLAST of Lcy03g009990 vs. NCBI nr
Match: KAG6588160.1 (hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022053.1 hypothetical protein SDJN02_15782, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 177.6 bits (449), Expect = 6.6e-41
Identity = 101/121 (83.47%), Postives = 106/121 (87.60%), Query Frame = 0


Query: 1   MAAYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLV 60
           MAAY+RS T     FS+QWLLATIALII GFLAYAIYDAA+ASASEV QRLVIVSPLLLV
Sbjct: 1   MAAYTRSTT-----FSDQWLLATIALIISGFLAYAIYDAAIASASEVLQRLVIVSPLLLV 60

Query: 61  VAVHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLT 120
           V VHWLSLG G GGGG  S +SHNQ AVGFPWGVGFLLLLLLFPWSAAILLL+LYFFFLT
Sbjct: 61  VVVHWLSLGGGGGGGGGNSYYSHNQTAVGFPWGVGFLLLLLLFPWSAAILLLMLYFFFLT 116

Query: 121 N 122
           N
Sbjct: 121 N 116

[Close]

BLAST of Lcy03g009990 vs. NCBI nr
Match: XP_011660097.1 (uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa] >TYK14254.1 DNA (cytosine-5)-methyltransferase CMT3-like [Cucumis melo var. makuwa])

HSP 1 Score: 165.6 bits (418), Expect = 2.6e-37
Identity = 96/112 (85.71%), Postives = 101/112 (90.18%), Query Frame = 0


Query: 10  SSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLG 69
           SSSLSFS+QWLLATIALIIFGFLAYA+YDAAVASASEVFQRLV+VSPLLLVVAVHWLSLG
Sbjct: 7   SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66

Query: 70  SGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLTN 122
                GGY ++HS    AVGFPWGVGFLLLLLLFPWS AILLLLLYFFFLTN
Sbjct: 67  R---DGGYNNNHS----AVGFPWGVGFLLLLLLFPWSVAILLLLLYFFFLTN 111

[Close]

BLAST of Lcy03g009990 vs. NCBI nr
Match: XP_022157357.1 (uncharacterized protein LOC111024080 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 3.0e-33
Identity = 89/121 (73.55%), Postives = 98/121 (80.99%), Query Frame = 0


Query: 1   MAAYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLV 60
           MAA +RSG       SEQWLLAT+ALI FGFLAYAIYDAAVAS +E+FQR+V+VSPLLLV
Sbjct: 1   MAAPTRSGG------SEQWLLATVALITFGFLAYAIYDAAVASVAELFQRIVVVSPLLLV 60

Query: 61  VAVHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLFPWSAAILLLLLYFFFLT 120
           VAVHWLS+G G  G G        QAAVGFPWGVG LLLL+LFPWSAA+LLLLLYFFFLT
Sbjct: 61  VAVHWLSIGGGSSGCG-------TQAAVGFPWGVGLLLLLILFPWSAALLLLLLYFFFLT 108

Query: 121 N 122
           N
Sbjct: 121 N 108

[Close]

BLAST of Lcy03g009990 vs. NCBI nr
Match: KAE8653489.1 (hypothetical protein Csa_006929, partial [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 1.8e-25
Identity = 71/86 (82.56%), Postives = 76/86 (88.37%), Query Frame = 0


Query: 10 SSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLG 69
          SSSLSFS+QWLLATIALIIFGFLAYA+YDAAVASASEVFQRLV+VSPLLLVVAVHWLSLG
Sbjct: 7  SSSLSFSDQWLLATIALIIFGFLAYAVYDAAVASASEVFQRLVVVSPLLLVVAVHWLSLG 66

Query: 70 SGCGGGGYYSSHSHNQAAVGFPWGVG 96
               GGY ++HS    AVGFPWGVG
Sbjct: 67 R---DGGYNNNHS----AVGFPWGVG 85

[Close]

BLAST of Lcy03g009990 vs. NCBI nr
Match: XP_015957774.2 (uncharacterized protein LOC107481931 [Arachis duranensis])

HSP 1 Score: 90.5 bits (223), Expect = 1.1e-14
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0


Query: 3   AYSRSGTSSSLSFSEQWLLATIALIIFGFLAYAIYDAAVASASEVFQRLVIVSPLLLVVA 62
           AYS + +SS  SFSE WL+   + +I GFL Y +YDA +A+ASE+ QRL+++SPLLL++ 
Sbjct: 37  AYSVNRSSSGFSFSEHWLIVVASAVICGFLGYIVYDAVMATASELLQRLLVISPLLLIIV 96

Query: 63  VHWLSLGSGCGGGGYYSSHSHNQAAVGFPWGVGFLLLLLLF 104
           VHWLS GS        S       A G PWGV F+LLLL F
Sbjct: 97  VHWLSTGSQLSFPMPGSEPGAIHRAGGSPWGVAFVLLLLFF 137

[Close]

BLAST of Lcy03g009990 vs. TAIR 10
Match: AT2G31940.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G19875.1); Has 227 Blast hits to 227 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 227; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 9.0e-04
Identity = 31/90 (34.44%), Postives = 48/90 (53.33%), Query Frame = 0


Query: 21  LATIALIIFGFLA---YAIYDAAVASASEVFQRLVIVSPLLLVVAVHWLSLGSGCGGGGY 80
           L    LI+  F+    YA Y+  +   +  F+  ++ SPLLL++AVH+LS   G GG   
Sbjct: 15  LCVFVLILLMFVTISWYASYEPVIEGFTYQFKLALMASPLLLLLAVHFLSDDQGVGGMMT 74

Query: 81  YSSHSHNQAAV----GFPWGVGFLLLLLLF 104
              H + + ++    G PWGV F+L+ L F
Sbjct: 75  SLIHLNERESLYRAGGTPWGVAFMLVFLFF 104

The following BLAST results are available for this feature:

BLAST of Lcy03g009990 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g009990 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TFN5	1.3e-37	85.71	DNA (Cytosine-5)-methyltransferase CMT3-like OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0M2K2	1.3e-37	85.71	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G604070 PE=4 SV=1	[more]
A0A6J1DUA1	1.4e-33	73.55	uncharacterized protein LOC111024080 OS=Momordica charantia OX=3673 GN=LOC111024...	[more]
A0A444ZSA4	5.2e-15	50.50	Uncharacterized protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g061886 PE=4 SV=1	[more]
A0A6P4D1L0	5.2e-15	50.50	uncharacterized protein LOC107481931 OS=Arachis duranensis OX=130453 GN=LOC10748...	[more]

BLAST of Lcy03g009990 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588160.1	6.6e-41	83.47	hypothetical protein SDJN03_16725, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_011660097.1	2.6e-37	85.71	uncharacterized protein LOC105436341 [Cucumis sativus] >KAA0042234.1 DNA (cytosi...	[more]
XP_022157357.1	3.0e-33	73.55	uncharacterized protein LOC111024080 [Momordica charantia]	[more]
KAE8653489.1	1.8e-25	82.56	hypothetical protein Csa_006929, partial [Cucumis sativus]	[more]
XP_015957774.2	1.1e-14	50.50	uncharacterized protein LOC107481931 [Arachis duranensis]	[more]

BLAST of Lcy03g009990 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31940.1	9.0e-04	34.44	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: endomembra...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33306:SF22	PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR-ASSOCIATED PROTEIN 1	coord: 4..116
None	No IPR available	PANTHER	PTHR33306	EXPRESSED PROTEIN-RELATED-RELATED	coord: 4..116

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g009990.1	Lcy03g009990.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane