Lcy03g009930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g009930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Unknown protein
Location	Chr03: 43393270 .. 43395469 (+)
RNA-Seq Expression	Lcy03g009930
Synteny	Lcy03g009930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAAGAGTACCGGCGTCGGAGGGGCACGGAGAGGGGAAGGGGAAGGGGAAGGAGAGAGAGTGTTTTGTTGAAGAAGAAAAAGAAAGTGATGGTGGTGTTGGAGAGCGGCGGCGGCAGCCATTGCCGACAAGATGGTGAAGGAGATGGAGACAAGAGGGGAAAAAGAAGAGAAAGGGGGATCGGTGAGAAAGAGGGATTTTTTAAAAAATTAGGTTAAAAATCCCTTTTCTCAACTTTCATGAAAGTAATAATTTGGTCTCTGAGCTTTGATTTGTAACGATTTAGTCATTGTACTTTCAATTTTGTAACAATTTAGTCCCTATATTTTCAAATTTGTAACAATTTAGTCCATATACTTTCAAATTTGTAACAATCTAGCTCCTATGCTTTCAAATTTGTAACAATTATCGCAAAAAAAAAATCAAAATTAAATGTCGATTTTTATTATTTCATTATTAAACTTTGTAGCCTATTAACCTATTGGGTCCAAATTAGTTTATTAATAAGAAATTTCATTAAATCTATAAATTAATTTTCCACGATAGAATCTAAATCGTTACAAATTTGAAGTACAGGGACTAAATTGTTACTTAATATTGTTACAAAATTGAAAGTATAGAGACTAAATCGTTACAAATTTAAAAGTACAGGGACTAAATCGTTACAAATCAAAGTTCATGGACTAAATTGTTACTTTTACGAAAATTCAGGCACCAAAAGTGATTTTTAATCTAAAAATTATTATTATATTATTTTTTAATTTAAAAAATAATATTTTATTATTTTTAACTGCCACATCATTAAACAAAAAATTAGCGGGGGTATTTTCCCTATTTATTTAAATGCTCAAGGCTTAAGCACAGTGACTGAAAATAAAAAAATTTCTGGAGCGAGCTTTTCCTTCAACCTGTCCTTTATATAATGTGCAAATCCAGTGCATAGGAAACAACTCTTCTCTGATTGTTTCTGTTCCTGTATTATCAGCTGAAAAGCCTCAAGATGAGCACTTTTTCTCATTATTTTATTTATATTTCTCAATTTTCCTCTCATGGGTTGGTTTAGGTTGTATGCACTATGCAGAAGCAACTTAGAGAAGCATGAGTTCTGAACAAATTTTAGAATCAGGCAAAATTTTAGAAACATCAAGATGATCTTTATGGGGTTTCTAATAGAATCTAAGGAAATAAGTATCAATCCATAAGTTAGGTGGAGGACTAGAACCTGAAATATGATTTATATCGAAAGTAAACTAAGCAATCAACCCAATAAGCATAGCATCTCTCTGAAAGTCTTTTTGAGAGTTCAGTTCATCAACCTCACTGCACTCATTGTTCCAGAAGATTGCACGGTAGCTTTGAACAAGGAATCAAAATTAAGTGAATATTCATGATTGAGTCCTTGTAATAGAGTAAAAATTACATGGAAACAAATAGCGAGGTAGCTCCATATTCATATTTGTTGAGTTCAAAAAGGGTCAAATGCGATAAATAAAACTAAAGTCAAAATACAAACAAGTTGAATATTTAGTTGTTCAAAGAGAGACAAACAAGTAAGCTCAATTCCAAAAGAAAGGAGTAGATACTAATCCAACTTGTTTATTATGCAGGTTTAAGGAGGATTCAGCAGAGCACGTATTTTGGAAATGCAAGCTTGCGAAAAAAAATTTAGGCAAATTTCCTTCCAAACTCACTTGCTCCAGCAGCGGTGATTATGTGGAACATATGGAACTCGAGAAATCAAAGTCATCACAGCGGGCAGAGACCAAACCATCATCAAATTTTCAGATCAATTACCATCAATTTGGAAGAGCTTGAAGAGAAGGAGAGAACTAACCTTAGCTCGGCAATGGCGGAGAACCATTCGAGTCAGGAGCGATGGACCCCGCCGGAAAGAAATCTGTGTAGAAATTGAACGCCGATGCGTCTTGGTGTGAGAAAGCAGGAGCAGGCGGGCTGGGGTGGGTGATCCGCGACTCGTCGGGGTCTCTGATTGGAGCTGGATGCAAGAAAGTCTGCCGGAAATGGGCGATTAAGGAACTGGAGGCTCAAGCCATTCTCGAGGGGCCGAAGCAGCTTCATGCTTTGGCCGATGTTGAAGGAGGTCGATCGAAGCCTCCCCTGGTTGTAGAATCCGATTCGAGTGAAGTCATCAATGCGCTCAAGCACGAAGAGGAGGACCTTTCCGAAATTTCGTAG

mRNA sequence

ATGAAGGAAGAGTACCGGCGTCGGAGGGGCACGGAGAGGGGAAGGGGAAGGGGAAGGAGAGAGAGTGTTTTGTTGAAGAAGAAAAAGAAAGTGATGGTGGTGTTGGAGAGCGGCGGCGGCAGCCATTGCCGACAAGATGGTGAAGGAGATGGAGACAAGAGGGGAAAAAGAAGAGAAAGGGGGATCGGAGCAGGCGGGCTGGGGTGGGTGATCCGCGACTCGTCGGGGTCTCTGATTGGAGCTGGATGCAAGAAAGTCTGCCGGAAATGGGCGATTAAGGAACTGGAGGCTCAAGCCATTCTCGAGGGGCCGAAGCAGCTTCATGCTTTGGCCGATGTTGAAGGAGGTCGATCGAAGCCTCCCCTGGTTGTAGAATCCGATTCGAGTGAAGTCATCAATGCGCTCAAGCACGAAGAGGAGGACCTTTCCGAAATTTCGTAG

Coding sequence (CDS)

ATGAAGGAAGAGTACCGGCGTCGGAGGGGCACGGAGAGGGGAAGGGGAAGGGGAAGGAGAGAGAGTGTTTTGTTGAAGAAGAAAAAGAAAGTGATGGTGGTGTTGGAGAGCGGCGGCGGCAGCCATTGCCGACAAGATGGTGAAGGAGATGGAGACAAGAGGGGAAAAAGAAGAGAAAGGGGGATCGGAGCAGGCGGGCTGGGGTGGGTGATCCGCGACTCGTCGGGGTCTCTGATTGGAGCTGGATGCAAGAAAGTCTGCCGGAAATGGGCGATTAAGGAACTGGAGGCTCAAGCCATTCTCGAGGGGCCGAAGCAGCTTCATGCTTTGGCCGATGTTGAAGGAGGTCGATCGAAGCCTCCCCTGGTTGTAGAATCCGATTCGAGTGAAGTCATCAATGCGCTCAAGCACGAAGAGGAGGACCTTTCCGAAATTTCGTAG

Protein sequence

MKEEYRRRRGTERGRGRGRRESVLLKKKKKVMVVLESGGGSHCRQDGEGDGDKRGKRRERGIGAGGLGWVIRDSSGSLIGAGCKKVCRKWAIKELEAQAILEGPKQLHALADVEGGRSKPPLVVESDSSEVINALKHEEEDLSEIS

Homology

The following BLAST results are available for this feature:

BLAST of Lcy03g009930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g009930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g009930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g009930 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002156	Ribonuclease H domain	PFAM	PF13456	RVT_3	coord: 61..142 e-value: 1.5E-8 score: 34.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..19
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..61
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 43..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g009930.1	Lcy03g009930.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0004523	RNA-DNA hybrid ribonuclease activity