Lcy03g009200 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g009200
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	clathrin coat assembly protein AP180
Location	Chr03: 42087899 .. 42088601 (-)
RNA-Seq Expression	Lcy03g009200
Synteny	Lcy03g009200

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAAAAATTGAAGAACGGAAACTCAGATATGGAACGAGCCTAGATCTGAGCTCATTCCAGCCCCCCCTTTTTTAAATAGCTAAACAGAGTGATTCGGAAAACTCGTCCTCAGAAAATTCCAGTCAGTGGGATTACACCACCTTTGTTCGAACCTTCGCTCTGTATCTCGACGAGCGACTCGATTTCTTCTTGACTGGGAAGCTTTAGAAGCGATTCACGCAACAGAAGACAGAGAGTTTTGGAACTGCATGGCGGTTCAACGAGGCGATTCGAGATATGAAATCGGTGGTGTTGATTGATCAGATTTTCTACTGGCCGAAATTTCTCGACAGAGCAAATGCCATCAGACCCACCAGTCTGGCTAAAGGGAATCAACTGGTTCAACATTCCCTTCACGCCGTCGTTCAAGAGAGCTTCAGTTTATATAGAGATATCTCAAATCGAACCAGATCTGGAATGAAAGATTTAGGAACGCCGAGTACGCCTGAAGCCGACCACCACACGACACTGCGTTTCGGATCTGCAGTTCGTGAAGAAGACCACTCGAGTTTGCTCGAGTCTGTGTTTTAGATCTGTGTGTGCGTCGTGCCGGAGAAGAAGACCACCGTGATAGGAATTTTTTTTTTTTTTTTTAAAGAAAACAGAAAGAAAGGGAAGAAAGGAAGAAGAAGGAGAAAGAAAAAAAGATGAAAGGAAGAGGCAG

mRNA sequence

AAAAAAATTGAAGAACGGAAACTCAGATATGGAACGAGCCTAGATCTGAGCTCATTCCAGCCCCCCCTTTTTTAAATAGCTAAACAGAGTGATTCGGAAAACTCGTCCTCAGAAAATTCCAGTCAGTGGGATTACACCACCTTTGTTCGAACCTTCGCTCTGTATCTCGACGAGCGACTCGATTTCTTCTTGACTGGGAAGCTTTAGAAGCGATTCACGCAACAGAAGACAGAGAGTTTTGGAACTGCATGGCGGTTCAACGAGGCGATTCGAGATATGAAATCGGTGGTGTTGATTGATCAGATTTTCTACTGGCCGAAATTTCTCGACAGAGCAAATGCCATCAGACCCACCAGTCTGGCTAAAGGGAATCAACTGGTTCAACATTCCCTTCACGCCGTCGTTCAAGAGAGCTTCAGTTTATATAGAGATATCTCAAATCGAACCAGATCTGGAATGAAAGATTTAGGAACGCCGAGTACGCCTGAAGCCGACCACCACACGACACTGCGTTTCGGATCTGCAGTTCGTGAAGAAGACCACTCGAGTTTGCTCGAGTCTGTGTTTTAGATCTGTGTGTGCGTCGTGCCGGAGAAGAAGACCACCGTGATAGGAATTTTTTTTTTTTTTTTTAAAGAAAACAGAAAGAAAGGGAAGAAAGGAAGAAGAAGGAGAAAGAAAAAAAGATGAAAGGAAGAGGCAG

Coding sequence (CDS)

ATGAAATCGGTGGTGTTGATTGATCAGATTTTCTACTGGCCGAAATTTCTCGACAGAGCAAATGCCATCAGACCCACCAGTCTGGCTAAAGGGAATCAACTGGTTCAACATTCCCTTCACGCCGTCGTTCAAGAGAGCTTCAGTTTATATAGAGATATCTCAAATCGAACCAGATCTGGAATGAAAGATTTAGGAACGCCGAGTACGCCTGAAGCCGACCACCACACGACACTGCGTTTCGGATCTGCAGTTCGTGAAGAAGACCACTCGAGTTTGCTCGAGTCTGTGTTTTAG

Protein sequence

MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISNRTRSGMKDLGTPSTPEADHHTTLRFGSAVREEDHSSLLESVF

Homology

[Close]

BLAST of Lcy03g009200 vs. ExPASy Swiss-Prot
Match: Q9ZVN6 (Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana OX=3702 GN=AP180 PE=1 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 1.1e-12
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK V+L+D+I YW K LDRA A RPT  AK N+LV+ SL+AV+QESF LYRDIS+
Sbjct: 202 MKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLYAVMQESFDLYRDISD 256

[Close]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL
Match: A0A5D3C685 (Clathrin coat assembly protein AP180 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1465G00110 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL
Match: A0A0A0KGJ5 (ENTH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421580 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL
Match: A0A1S3BN17 (clathrin coat assembly protein AP180 OS=Cucumis melo OX=3656 GN=LOC103491352 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 2.3e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL
Match: A0A6J1JET6 (clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC111486264 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 1.9e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Sbjct: 181 MKPTMLIDRISYWQKLLDRAIATRPTGSAKRNRLIQHSLHAVVQESFDLYRDISD 235

[Close]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL
Match: A0A6J1I2N8 (clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC111468453 PE=4 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 2.5e-12
Identity = 39/55 (70.91%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I+YW K LDRA A RPT  AKGN+LV +SLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRIYYWQKLLDRAIATRPTGPAKGNRLVLNSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. NCBI nr
Match: XP_008449479.1 (PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo] >KAA0061650.1 clathrin coat assembly protein AP180 [Cucumis melo var. makuwa] >TYK05856.1 clathrin coat assembly protein AP180 [Cucumis melo var. makuwa])

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. NCBI nr
Match: XP_004140244.1 (clathrin coat assembly protein AP180 [Cucumis sativus] >KGN47964.1 hypothetical protein Csa_003702 [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 4.7e-13
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDIS+
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDISD 241

[Close]

BLAST of Lcy03g009200 vs. NCBI nr
Match: XP_038887470.1 (clathrin coat assembly protein AP180 [Benincasa hispida])

HSP 1 Score: 83.6 bits (205), Expect = 1.0e-12
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AKGN+LVQHSLHAVVQESF LYRDI++
Sbjct: 187 MKPAMLIDRITYWQKLLDRAIATRPTGPAKGNRLVQHSLHAVVQESFDLYRDITD 241

[Close]

BLAST of Lcy03g009200 vs. NCBI nr
Match: XP_023531390.1 (clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Sbjct: 181 MKPTMLIDRISYWQKLLDRAIATRPTGSAKRNRLIQHSLHAVVQESFDLYRDISD 235

[Close]

BLAST of Lcy03g009200 vs. NCBI nr
Match: XP_022989087.1 (clathrin coat assembly protein AP180-like [Cucurbita maxima])

HSP 1 Score: 81.6 bits (200), Expect = 4.0e-12
Identity = 39/55 (70.91%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK  +LID+I YW K LDRA A RPT  AK N+L+QHSLHAVVQESF LYRDIS+
Sbjct: 181 MKPTMLIDRISYWQKLLDRAIATRPTGSAKRNRLIQHSLHAVVQESFDLYRDISD 235

[Close]

BLAST of Lcy03g009200 vs. TAIR 10
Match: AT1G05020.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 73.9 bits (180), Expect = 7.7e-14
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDISN 56
           MK V+L+D+I YW K LDRA A RPT  AK N+LV+ SL+AV+QESF LYRDIS+
Sbjct: 202 MKPVMLLDKITYWQKLLDRAIATRPTGDAKANRLVKMSLYAVMQESFDLYRDISD 256

[Close]

BLAST of Lcy03g009200 vs. TAIR 10
Match: AT2G25430.1 (epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related )

HSP 1 Score: 43.1 bits (100), Expect = 1.5e-04
Identity = 19/39 (48.72%), Postives = 29/39 (74.36%), Query Frame = 0


Query: 15  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI 54
           + LDR  ++RPT LAK ++++  +L+ VV+ESF LY DI
Sbjct: 263 RLLDRFLSLRPTGLAKNSRMILIALYPVVRESFKLYADI 301

[Close]

BLAST of Lcy03g009200 vs. TAIR 10
Match: AT4G02650.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 42.7 bits (99), Expect = 1.9e-04
Identity = 20/54 (37.04%), Postives = 36/54 (66.67%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS 55
           MK+  + +++ +  + LDR  A RPT  AK N++V  +++ +V+ESF LY +I+
Sbjct: 203 MKTEKIFNRVQHLQQLLDRFLACRPTGNAKNNRVVIVAMYPIVKESFQLYYNIT 256

[Close]

BLAST of Lcy03g009200 vs. TAIR 10
Match: AT1G03050.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 42.0 bits (97), Expect = 3.3e-04
Identity = 20/54 (37.04%), Postives = 35/54 (64.81%), Query Frame = 0


Query: 1   MKSVVLIDQIFYWPKFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDIS 55
           MK+  +  +I +  + LDR  A RPT  A+ N++V  +L+ +V+ESF +Y D++
Sbjct: 198 MKTEQIFIRIQHLQQLLDRFLACRPTGNARNNRVVIVALYPIVKESFQIYYDVT 251

[Close]

BLAST of Lcy03g009200 vs. TAIR 10
Match: AT4G32285.1 (ENTH/ANTH/VHS superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 7.3e-04
Identity = 18/39 (46.15%), Postives = 28/39 (71.79%), Query Frame = 0


Query: 15  KFLDRANAIRPTSLAKGNQLVQHSLHAVVQESFSLYRDI 54
           + LDR  + RPT LAK ++++  +++ VV+ESF LY DI
Sbjct: 243 RLLDRFLSCRPTGLAKNSRMILIAMYPVVKESFRLYADI 281

The following BLAST results are available for this feature:

BLAST of Lcy03g009200 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVN6	1.1e-12	65.45	Clathrin coat assembly protein AP180 OS=Arabidopsis thaliana OX=3702 GN=AP180 PE...	[more]

BLAST of Lcy03g009200 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C685	2.3e-13	74.55	Clathrin coat assembly protein AP180 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGJ5	2.3e-13	74.55	ENTH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G421580 PE=4 S...	[more]
A0A1S3BN17	2.3e-13	74.55	clathrin coat assembly protein AP180 OS=Cucumis melo OX=3656 GN=LOC103491352 PE=...	[more]
A0A6J1JET6	1.9e-12	70.91	clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]
A0A6J1I2N8	2.5e-12	70.91	clathrin coat assembly protein AP180-like OS=Cucurbita maxima OX=3661 GN=LOC1114...	[more]

BLAST of Lcy03g009200 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008449479.1	4.7e-13	74.55	PREDICTED: clathrin coat assembly protein AP180 [Cucumis melo] >KAA0061650.1 cla...	[more]
XP_004140244.1	4.7e-13	74.55	clathrin coat assembly protein AP180 [Cucumis sativus] >KGN47964.1 hypothetical ...	[more]
XP_038887470.1	1.0e-12	72.73	clathrin coat assembly protein AP180 [Benincasa hispida]	[more]
XP_023531390.1	4.0e-12	70.91	clathrin coat assembly protein AP180-like [Cucurbita pepo subsp. pepo]	[more]
XP_022989087.1	4.0e-12	70.91	clathrin coat assembly protein AP180-like [Cucurbita maxima]	[more]

BLAST of Lcy03g009200 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05020.1	7.7e-14	65.45	ENTH/ANTH/VHS superfamily protein	[more]
AT2G25430.1	1.5e-04	48.72	epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly p...	[more]
AT4G02650.1	1.9e-04	37.04	ENTH/ANTH/VHS superfamily protein	[more]
AT1G03050.1	3.3e-04	37.04	ENTH/ANTH/VHS superfamily protein	[more]
AT4G32285.1	7.3e-04	46.15	ENTH/ANTH/VHS superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011417	AP180 N-terminal homology (ANTH) domain	PFAM	PF07651	ANTH	coord: 5..56 e-value: 4.2E-7 score: 29.2
None	No IPR available	PANTHER	PTHR22951	CLATHRIN ASSEMBLY PROTEIN	coord: 1..55
None	No IPR available	PANTHER	PTHR22951:SF75	CLATHRIN COAT ASSEMBLY PROTEIN AP180	coord: 1..55
None	No IPR available	SUPERFAMILY	89009	GAT-like domain	coord: 5..56

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g009200.1	Lcy03g009200.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0048268	clathrin coat assembly
biological_process	GO:0072583	clathrin-dependent endocytosis
biological_process	GO:0015031	protein transport
biological_process	GO:0006900	vesicle budding from membrane
cellular_component	GO:0005905	clathrin-coated pit
cellular_component	GO:0030136	clathrin-coated vesicle
cellular_component	GO:0005794	Golgi apparatus
molecular_function	GO:0005545	1-phosphatidylinositol binding
molecular_function	GO:0032050	clathrin heavy chain binding
molecular_function	GO:0005546	phosphatidylinositol-4,5-bisphosphate binding
molecular_function	GO:0000149	SNARE binding
molecular_function	GO:0005543	phospholipid binding