Lcy03g008970 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g008970
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	RNA-binding protein Y14-like
Location	Chr03: 41664617 .. 41676601 (+)
RNA-Seq Expression	Lcy03g008970
Synteny	Lcy03g008970

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGGCAAACCAGAAACCCTTGTTTCGATCCCCAAAAACCCCACCATTCCCATCTTCTTCCTTTCCATTTCCCCCCTCACCATTTCGCAGAACCGACGAGGAGCTCTGAGAGACCTTTGTTAGCTATGGCGAGCGCTGATGTTGAGGCTGTCGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGCCTCCCCGCGAGCTCCTTTTCCTAAGCTCAAATCTGCCATTACCGGCGGCGCATCTTCCTCGCTAGCCGGTGGTGCGAAGAAGACCAAGGGTCGTGGTTTCCGAGAAGAATCTGATCGCAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGACGGCCCTGGCCCCCAACGATGTTAGTTCTGCCCCTTTCTCTTTCTTCATCCATTCCCCTTCTTCTTCTTAATTACATAGTTCGACAGATTGGGGTTTGCCATTTTTTTTTTTCTCTGTGCTGGTTTCTTTTTTCCATTTGTTATAGCTAGGGTTATGAAATTTTGGATGCTTATTTACTTGGTAGGTGGCGGATTTAGATGTATTGGCCTGTGCGTTCTACTGAAGGTTTTTTTTCTTGAATTTTCGGGATTAATGAGTTGAGAGTAAGCAAATCTTTTTCTCGAGCTTGAAGGGATTTTGCTTACTGTTAATGTCGGCTGGTTTTGCCCTCTTGTTTCAACAATGTAACAGATCTTTGCTGAAATTTGATGTGGGAAATAGTCATAGAGAAAAAGGTTTAATGTCTTGATGTGGAAAATTATCATGGAGCATCGACACTCAAGGGAGTTAAAAGAATGAACCTTTCGTTGCCTTATCCTCAAAAACGGTGCACTCTTTGCTAAGCGGCTGACGAGTCTTAAGATCATTTTTTCATTTATTTGCCACCTCCCTTCTCCTAGTGTAATTTCCCCTTTTCTTCTTACGGGTGTATCAACCATTAGCACACGGACATAAAGTAAACTCTTCACTCTATCATGACTTTTTTGGGACAAGAAATGGAACTTTTCATTGATGAATGAAAGGAGACTATTGCTCAAGGATACAAACTCCACAAGGGAGGGAAACCAAGAACCTAATGGATGGATACACAAGGAACAATAAAACAATTAAAAAAAAAGAAACCAAAAGGAAACTACCACAAGAAGAAACTAAAGAGCAAGCGAACGTAAAGGAAATAACCCAAGGAAAAACTTGCAACAACAGACGAGTCTTAGAAGCCAAAAATAATTCAGAAGGCTGCCTCCAAACTCACAAGGGAGCATAAATGAGGACAAAAAGTAGAATCTGAACCATCGAAACCTGCATCTCTTATACCACCCTGCAGAGCAAACCAAAACCAACCAGAGAACAAGCTTTATTGGAGCCCATCTTAGTTCAGCTTGATTAGAAGTTGGTTTGATGACTAAAATAAAGCCATTTCTTCATTCTCTTATGACCAGTGTTTTAAAAGGCTCAAGGCGCACTAAGGCGCAATGGCCTCCTGGGGCCTAGGCGCAAGGCGCACAAAAAGGCGCGGGCTTTATTATGTAAGGCACACTATATAGAAAAAAAATTTACAAAAATATATACATGTATATAAAACACTTTCATGGCAAGTAATGAAGTTTTTAACCAAGAAAAATAGATAAAAGATAAATAAGGTTCAAATATCAGTCTTCCAACATAGAGTCAAATGTCAATACTCCACAAAAAATAGTGAGTTTAGTATTGTTAATATGCCTTCCTTGTTGTTTGCTCATCTGTTTATTCACTCATGTATGTACAACATAAGAGCTGGTATTCTTGGATTCTTTCTTCGCTTACAAGCTTGAATATGATATTTGACACTCCGAATGACCAAGTAAGGGGGTTCGGGGGCAACGCCCCAGAAGCTAAATTTAAAATTAGCTTCATAACAAGTATTTATGTTTAAAAAAATTTAAAACATATATAAAATTGTGAAGTCCCAGAGGCGCCTAAGGCGCGCGCCTCGGGGGCTTCGAGGAAGGCGCGCGCCTTGGCCGCGCCTTCCTCACTGCGCCTTGCTTCTTCGAAGCGAGGCGCTAAGGTTGCGCCTTGCGCCTAGGCGCGCGCCTTTTAAAACACTGCTTATGACTAACTATCCCTTGGAGGGATCATTCAACATCAGCCCTTTATAACCAAGGATGGGCTTGTGCCGAATGGTCTCAGTTAGTTTACTTGCTCTCCTCCTTCCTTTTGTCTAAATCCCATTGGTTCCATGCCAATAAATGTTGACCTTCAGTATACCAATTCTCCTATTTTAAGTTGGAAAAGGGGAAACATTACTGGATCGGTCGGGAGTTTTAGACCCCTACTCACTCCTAGCTTGTATCATATATGATCTCTCAAATATCGCATCTTGTTCAGTTCTAGATGTTTGGAGTTTTCAATTTGTGAGCTTGAACATTGTAACCAGGGACTTTCTTCATGAGGTTGAAACTCATGGATGAAAGGAACTTTACCCTCTTAATTAGAATTTGCCTCCTAATCAGAAAGAAGATTCTAAAATGTGGACACTGGATAGTTTGGGGTTTTATCGTGCAAATCTCTTCTCTCTAAGCTTTCGTGTCTATTTATTGTATTCTAAAAGGTTGGTCCTCTGAGATCTGGCATGCTAGAGTTCCTAATAGGATTCAAGTTTTCCCTGTGGTCCCTTGTCATCAACTATCAATATTAATGATAGGATTCAATGGAGGAATCCTCGAATCTCCCCCTATCCTCAACAGTGTATTACCATTAGGAATGGTGCAGAGAATAAGCCATCTCTTTTCTTTCACCTTTTGCCTATGATTGTTGGATGTTGTCTTCCTGGAAATGTTGCTTACATGGGTGTCTGCACATGTCTTTTGTGGTCTTCCTCTTGGAAGTCTACAATGATCTGCTTTTTGGTGATGAAATGGTAGTTCTTTGGTGAATGCTTGTATTGCTCTTGTTTGGCAGTTATGCTTGAAAAGATGTGATAGATTTTTTTAATGATACTCTAAAACTTGGGAAGATTTTTTGTTTTGGTTCATTTTGTAGCTTTCCTCTGGAGCTCTTTCAATCGAACATTTTAACTATTCTCATTGCTCTCTCTCTTAAAGATTTAAACCGGGAAGCTCTTTGTAATTCCTTGGTTTGGGCTTGGGGGATATCTATACCCTCCCCTTTTGTGCACTTTCCCTGGTTATTTAGGTAAAGTTTTTGTCACCGAACAGAAAAAAAGGTGGCCCAGGTCAGGGACTTCAGTCATTTCAAGAAAAAAATTATAAACATTTTATCCACTTGGATTTATGAGTAAACAAATGATTCGATGTGTCCAAATTTCCATATTGTGCTAAACAAAAGCTAAGTTTGTCAATTTTTTGCATATGATCTCATGAGTCACGAGCTTAAAACTATCATTCATTTCTTACAGAACAAGAGATCAAGACTATCCTAACACTGATTTAATAGCTGCAGTACATGGTAGTTGCATAATTTATGCATTTGCTTCTGCGGGAAGGTGGAGGAACAGTGACTTCTTACTTTTGCAATTTATCCTTTTCTTTTAAAAAACCCTTTCATCTTTACACTCCATCAGTAGACTGATTGGGAAAATCTAGTACGACTTATCCTGGATCAAAGCCTGCAAAATTTTACCTGCTATGCAGTATTGCAGGTTTTAAGGCTCTTTCAGATGGACAGGTACACCCTGATTGATGGTGCCTGTCCCACATTGCTTGGCTTTCTGAGCATGTCCTTGGTACTCTGTTGTCAGTGAGAAATGTTTAATTATATGATATAAATAGTTATAGAAATAGTTCATGTGGAGAGCAATAGATCCTTTAGCTAGTACAACACCTTTAAATCAATTTCTAATTCTAGCTACTGTGTGTAGCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGACCGTCGTACTGGGTTTGTCAAGGTACATTTGCTTACTATTTTATTTTTTTTCCTATAGTAACTGTAATTTATATATTTTATCTCTTTTCTATTAAAGAGAAGTAGAAATATGCATATATGTCGTTTGGTTGTTCTATACTTAAAAACATCTAATAACTAGGTAATTTTGAAAGGAATAGAAATAGAAAACTTAAATGTTGCTAATGATCGTATGGTTTGTAAGAAGAATGTAGTAGTGTAGATTCTATTTTTATATTTGATGTTTTTAAAATCTGCATATTCTCCCTTTTCTTTGCACCCTTCTTGATAGTACAATAAATTGTTTTAATGTTAAATAAGGTTTGCCAAATAGTTCCTCACCCTATCTGGCGTACCTTTCTTTTGTAATAATAGTTTTTTTAAGTCTATCAATTGGGGCAATTGTTTTCAAGCTCCATTTGAGTTTATCATCTATCTTGATAGAATTAAAGGGGTTTCTTATAATTAATTAATTAAAGGAGGAGCCCAAAATGCCAAGTTGAACATTACTCTAGTGGTTAAGTATTTGTACTCGTCTATTATGGTGCATAAGTTCGAACCACCCCCACCCTATTCTTTGCAATGTAATATTAAAAAATTAAAGAGTACAAAAGGTTGGAGGTTAAAGTGACGTCCTCTAAATAAGATTTTGTACTACAGTAAACCAGCTACAATGCAGTAAATACATTATACTGGGGGTACCAAAAGCTTGGAAAATAAAATGTCCACCAAAGATTTTACAGGACAGTAAACCAGCTCCATTTTTTTTTTTTTGGATAAAAACCGAGCTTTCAATGAGAAAAATTGAAAGAATACAAGGAGATCCAAAATACCAAGTTCCAAAGAAAGGAACCCAACCACATACAGGGGCTCCAATCAAGCAAAATGTAACCTAACAAGAAAAACTTTAGACACTGATGCCTAAAGTTAACCAGCTACAATGCAAGAAATAAGATTAACATGTTTCAAATAAGCAAACACCAGAAGGAAACACATCTCAAATAATGAGGTTCTGCAAACTTACCCTAGAAGATTTTTTTAGGACATACCATTGATGAAAGCTCAAAAATGCATCATCCAAAGAGTTGGAAATTTTTGTAAAAAGGATCCTTGTAAAGTTGTTTTTTTTTAATAATTTAATTATTTAAGGATCCTGATAATGTGTACATTGAGAAAAAAAAATCCAACAAATCTTTAACCCTTTGAGAAGCTCAGTTTTTTATTTTTTATTTTTTATTTTATCTTTTTAATGGGAAACAAAGACAAAAATATGTTGATAGGAATGTCATTAGGGTGGAATTAGGAATATTAGTAAGGATATATTAGCAATTAGTTAAGAAGTTTGTTAGGATATTTGGTTATAAATAGGAGTATGTAAAGAGAAAGTTAACATTGATTCAATTGGTTTAGGACTTGAGTGAGCTTAAGAGAGGGAGGATCCAAGTACCTTGAAACACTTGGTTTATCTTGTAGTTTGGTTGTTTTTTATGTTGCAATATATTTCGAGTTCTATCAATTGTTTTCAAAGTAGTTCGGTTTTGGCCATGGAGCTCGATGCAAGTTTACATGAAGAGTTGTTGGTTGTCAAATGATGCAAACTTTTAGAGAGATAAAAGAAAAGATTCAGAAGTAAAAGAAATGATGAGAATGGAAAATCGAAGAGGTAGAAATTTAACTAGAATCAGGTATCTCATCGGGTAAGAAATTGAGGATACTAAGAAGGTTATTGATCAAGAGAGTGAGAGTGCCGAAACAAATCAAGAATCATTAGAATCCTTAGAGGAGGAACGAAAATGGGAAGAACGAGAAATCAATGAAGAAAATAAGTACGAAAAAGGGCAAGAATCAGTTGAGAAAGAATGAGGCCATACGAAAGTGAAGGAGAGGAGAACATGGTTGCCAGAAAACCAGTAGAAAAGGAACAGAGTTGTCCAAGGTTTTGTTCGTTAGCAAAAAAGAGGGGAAAAGGAACAAAAAGATGGGAAAGCGGATGAAAAATACTAGTGAAGAAGGTTAGGTTACGAGGAGATCCACTTGTAATTTGTTGGAATCAGAATTTGAAGATTGTGTGCAAGTGGGCTTGAAAGATACTTTACTCGATGAAGGTTGGATTTTTGGGGAGAGATCTCGACCATTGATGATTTCGTGGCAAGAGGTGAAGTTGTGGCGGGGTGACGCTTCAACAGTTGCAAAGATCAGGAGAAGGTGAATAGTTGTGACAAAAATTGAGAAAAAAAAGATATGAAAGACTGAAGCCATGGCCAACAACAAAAGCATGTATGGCCAGAGATGAAAATTTAGTAAAAGCGCCAATGTCGTTTTCATGAAGAGATGATGGTGAGGTGGGTTAGTCACGTGAAAGGTCGGGAAGGAAAAAAAATCTGGAAGTAAATGGGACCATGGGCTCAAATAACTCTTTTTGAGTGGGTTGTGTTTAAATAAATGGCATGAGGGCCCATTTACTTTCCAAGTTTGGAAAGGAGGTAGATGGATTTTGGGCTAGATTGTCTTTATTTTAAATCCCAGTAATTGACCTATTTTGGCAAGATCCTATCCACGTGAAGAGAAATCCTAGCGGCTGCTGTGTACGTCGCAAACTGTTGTTGCTTACGCTGTCACGACCGACCATCTTTGCTAATGCCGTCGACCACTGGCCATCGCACTTGGCTGTCGAAACACTGACTAGCTAGGTTTTCATAATGCTAAGAAAAAAGAGAAATGAGAGAGAAAGCTGAGATATATTTTGATCGTTATCCAATTTTGGAATTTTTTTGTGTAACCACACCTTGAGGAAAAGTTGTGTTTTAGGTGCGGGTAATGATAGGAATGTCATTAGGGTGGAATTAGAAATATTAGTAAGGGTATATTAGCAATTATTTAAGAAGTTTGTTCGGGTATTTGGTTAGAAATAAAGGGAGTGTGAAAGGAGAAAGTTAGACATTGATTTAGTTGGTTTTGGGCTTGAGTGATCTCAAGAGAGGGAGGGTCCAAGTACCTTGAAACATTTGGTTTATTTTGTAGTTTGATTATCTTTTACATTGCAATATATGTCGGGTTCTATCATATATTCTAGCAAGGGAGAGAACACACAACCTAAAAACTTTAGTGATGAGGGTCCCTAAGCCTAACTAGGAGGATAAAAAATAAAGGGCCTCCGGTCTAAGTTGATGAGCAAGCGAGTGTTATAAAAGGAATGATGTAAACAGTAAAGCACTCCCAGAGGAGGCTGTAAACTCTACACTTTCACAAAAAAAATATTAAAAGAAGACGATTTATCTAAGAATAGCTTGCTATTTCTTTCTCCAAATCATCCAGAGAAGTGCTCTGCTAGCACTATTCTATGAAATATTTGCTTTTTTCTTAAACCACCAACCTGACAGCACCAACATCAAACTATCTTCTACATTTCTAGGGGAGCACCAAGCCAAATAAAAAAAAATTGCAAATAAACATCCACCGCTGTACATGAATTGGCAATGAAGGAAAAAGTGATTGCTTAATTCTGAATTTTTGTTGCAGAGAGGACACATTGGGAGAAAGAGCTATAAATGGGTGTCTTCTTTGCACTTTATCCATTGTATTTTAAACTTCGATGAGCTAAAGGCCAAATGAAAAATTTTAGTTTCTTGGGCCTGTTTCCTTCCCAAATTGTCTTCGACAGTAGCTTGTTAAGATAAAGTGTATTTGCTTGGAGTAAGAAAGTTGCTCATTTGCCAGTAAAAGTCTGGAATCCGCTTCATTCTGTCTTCCTCTCCATTTGGTCTGATTCCTTCAAGAATGCCTATTAAATTTTCCCATTCTTCCAACTCTCTATCAAGAAGCCCTCTTCTAAGATTTAGATTCCAAATGTTGAGAATCTTAAAAGAAAGCAACCTAGTGAAGTTCCTAGGATGAAGCAAGTGGTTCGTAGAATCGACTTTCATATCCATAATTCATCAAGATGGATATAAGCAAACAGGGACACTATTTTTATCAAATAATTGCTCGCATAGATGGCCCATTCTAGAGTCAAACATGAGCACTATCTTCCATCTGAATCAATTGCGTGGATCAACTTCCATGATAAAGTTGACTGAAGGGTGAAAGATTCACACGATGACGTCCACAGCTAGTGCCATGAACTTGATAAATAATCTCCCACTATTTTTTCTTAAAAAGATCATAAACAAAGAATGACATGCAAAGGGGGGCCTTGGCCGACAAAAAAAACCATGGGGCAGTGGGACAAATTTTCCTTTTCAAAGGGGATAAATCTTACAAAATCCCTCCAATCCTAGTGTAGTTACCAAAGAACTTATGTGATGGTTGAGCACTCCTATTTGAGGCAATGAACAGTACAACATCATGAAAAAAATTCTGAAAAGTTTGGCTTATGTGTAAAAATCTTAGCCATCCTTTCCTTCCAAGAGCCAGAAAGGAGCGCTAGAGGCATTAATCATGGCATCCCTTCCTCCAAAAAAACTACAAAAAAAACTACAAAGGGATAAGGCATCCCTTACTCCAAAGAAACTACAAAAAAGCCTTCCATTGAAGGTTAATCATGGCAGCTGAGTAATTACAAAAAAATCCTATCTTGGGCACTCCAATTAGAGGCCGAAAGCTGTTAAGCATCACAAAAAATATCAAAAAGCAAGAACTTATCTATGAACACCCTCGCGTTTCTTTCCTTCCGCAAGTGCCAAATGATAGCTCTAGAGGAATTTCGCCTTAGGACTCTGGCTTTATCCTTTAATCAACCTCCTGCCAGCACCTCACTCAGCCAATTAACCACGCATGTAGGCTTACAGCCCTCCTGCCCAAAAGCTCCAAAAAACTGATTCCAAACCTTATCAGCAAACTCACAGTACATCACAACTTGAACGAACCTCAGGGAATCACTCTTCCACCATTTCTTTTAACAAACCCTATTTTATAAGCTAGATAATCCCAGCCAACCATTACGTTGGGCTTTGGCATTTTTCTTTGTTTCTCGTTGTTCATATATCCTTCAATTTTTTTTAACAAGAAATTAAACTTTTCATTGATGAAATGAAAAGAGATTAATACTCGAGATACAAAACTCCAAAGGGGAGAAAAAGCTAAAAGCATAAAGTGAAGCAAAAGGAAGCATAAAGTTACAAAAATCATTGCTAGTAACCCTTGAATATTGATGAAAGAGAGCACCAATGAGAAGATATGATCTTGATAAGCTTGAAACAATCTGATGAACAAAGATATTTATCCTAAAAAATTCTTTGGTCGTGCTTGAACCAAACGTCGGAGAGTAACGTTAGAGGCATTGATCCAAAGAAGCTTTACCTTGGAAGAGATACAGAGTTCTAAAGCCCCGTTTGATAACCATTTGGTTTTTGGTTTTTTAAAATCATGCTTATTTTCTCATAATTTCCTTGTAATGGTTTTCATCTTTGTTAAGGACACATTTGAATTCTTAGCCAAATTCCAAAACAAAAACAAGTTTTTGAAAACTACATCTTTTAGCTTTCAAAACTTGATTTGATTTTTGAAAACATGGGAGGAGGTAGATATCAAAACAAAGAAATTTATAGGTGGGTGGAGGTAGTGTTTATAAGCTTAATTTCCAAAAACCAAAATAAAAAAAAGCAAATGGTTATTAAACAGGATCCTAAGAAGCACGGACACGGACACGGACACGGACACGGGACACGGACACGGACACGACAGGACACGGCGATACGTCAAATTCTAAAAAACTAAGATACGGACACGTTGAAGATACGTTGTTTTTTTTTTTTATATATATATATATATTTTTTTTTTTAAAAAAATTTAGTATATATATAGATTAGTTTTTTTAAAAAAATAGTATATATATAAAACTTTGTTGAGAGTAGTTTAATAATCTTTCATTTTTTTTTTAATTTAAAAACAGTTTTAGTTTTTTATTGGGCTGGGCCTTTTATCTAGGTTAACTTTTTAGGTTTTAAAAGATAAAAAAGAAGAAAACTTAGATGAACCAGTGGGTTATTGGGTTGGGCCTTTTATCTAGGTTAAGTTTTTAGGTTTTAAAAGATAAAAGAAGAAAAACTAGTGGGTGAAGGGAGATATTGGAGGCAACTTCCGGCGGCAGCATGTTGAGGTTTTTGTGCTCTCTCTCTCTCTCTATCTCTCTCTCTCTCTCTCTAGACTCAGAGCGTGTCCGTGGCGTATCCAGCCGTGTCCTGGCGTGTCCGAAATTAAAAAAAAAAAAAAGACACGCAAAATTGCGTGTCGGACACGTGTCCGGAGCGTGTCCGAACGAATCCGTGTCCGACGCGTGTCCGACACAGATCCTCCCCCCATTTTGGCGTGTCCGTGCTTCCTAGACAGGATCTAAGTAATTGAAAGACCTTTGAATAAATATCTCCACTAAAAACCGAATTTATGTTGAATATTGAGAATAATGCAAACCGGCAATGACTTGAGAAAGAACATCGAAAGATGTGAACTTGGTCTTCAGAAGCTGCATATAAGGATGAAACAAAAGGGCCAACCAAAGAAGACAAAGACGTCTTAACAAACCTAGGGAAGGAAATTACAAAATTGCTTCTCAATTTATTACGAAAGATTTAAAATTACAACAATTCACCTGTAGGCCAGGTGAAAAACTTTTGTATAGCCCTTCTCTTTTGTACTTTCATATTTCTCACTGATCGTTGGTTGCTTATCCGCTGAACAAAGTATAAGTAGCGAGGTGTACTGCTGTACTTGGGATATTTTTTTTATAATGTCATCATTCCCTTGGTATGTGATTACCGTACCCAATCAGCCTTAGATTTTAGTCAAATTAATACTATGTTTCATTACAGATGCAGTCATGATATGAAGCTATTGCAGCATGCAATATCGTTTTAACACCATTCATGTATATGTTATATTTGTTGATTTTTGTGCGGATATGGAAATATCTCCTTTCTATTCCATCAACTAGGGAAATTATTGTATATTACAATAATTTGCTTTGCCATAGTTGTTTTGTTGAAGAAACACGAGCTTTAAAGCTTTGAAATCTGGATTATTTTGGTGGTAGATGTTTTTAACTTTTTATAGTAACATATTGCTCGTTTCGAAAAAAGCAAAGGTACCATATTGCATGTATATCAACAATAGTCTGCTTTGCCGTATCTATTTTTCTGGAGATACCTGAGCCTTACACTTTAAGATCTAGATTATTTAAGTGACAACCGTCTGTTTAGGAGCTGAAAATAGATATTTTAAGTCCTAATATCATATGTTGAGTTGATTGATGAAGACTACCATTTGGGTTTCCATCATTGTTATATCTACCCGACCCAGAAATTTACCCACTTTCTGTTGCGCCAATGTGCTGATATTTTTTTTTATTTCCGTTTCATCAAGGGATATGCACTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGTATGCTTCTCCAAGTCCCGTTCAAGATTAGCAAAGGGGATTATCAAATGTTTGCATTATAGGAAATTCACAAACCATGTATGTATTATTTTTCTAATTTAATTGCAGGCCTACTCGGGAACGACGTTCGAGGAGCCCTAGGAGGAGATATTGATTTTGTGGTGTAGAACTCCATGTGTGGTGTTTATGGATTTTAATCGGAAAGGTGTTTTTCTTGTGGATTGGATTAGGAGATGTTTCTACTGAGCTCTTACTCAACTGTCTCAAGATTCCCCTGGTTTCCAGCCCCTTTTTTTTCTCGGACGTTGATTTGGATTGATGAATTGTATGTAACTTAGAGGATCTGAGGTTTCTGATTTTCTTTTTTTTAATTTTTCTTCTTTTTTGGATTACTTGAGGTTTATGCCTTCTTGTGTTGATACCTGCTATTATAATATATATTTTTGTTCCAAATTTGGCTA

mRNA sequence

GGGCAAACCAGAAACCCTTGTTTCGATCCCCAAAAACCCCACCATTCCCATCTTCTTCCTTTCCATTTCCCCCCTCACCATTTCGCAGAACCGACGAGGAGCTCTGAGAGACCTTTGTTAGCTATGGCGAGCGCTGATGTTGAGGCTGTCGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGCCTCCCCGCGAGCTCCTTTTCCTAAGCTCAAATCTGCCATTACCGGCGGCGCATCTTCCTCGCTAGCCGGTGGTGCGAAGAAGACCAAGGGTCGTGGTTTCCGAGAAGAATCTGATCGCAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGACGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGACCGTCGTACTGGGTTTGTCAAGGGATATGCACTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGCCTACTCGGGAACGACGTTCGAGGAGCCCTAGGAGGAGATATTGATTTTGTGGTGTAGAACTCCATGTGTGGTGTTTATGGATTTTAATCGGAAAGGTGTTTTTCTTGTGGATTGGATTAGGAGATGTTTCTACTGAGCTCTTACTCAACTGTCTCAAGATTCCCCTGGTTTCCAGCCCCTTTTTTTTCTCGGACGTTGATTTGGATTGATGAATTGTATGTAACTTAGAGGATCTGAGGTTTCTGATTTTCTTTTTTTTAATTTTTCTTCTTTTTTGGATTACTTGAGGTTTATGCCTTCTTGTGTTGATACCTGCTATTATAATATATATTTTTGTTCCAAATTTGGCTA

Coding sequence (CDS)

ATGGCGAGCGCTGATGTTGAGGCTGTCGACTTCGAGCCCGAGGAAGACGACCTCATGGACGAGGATGGAGCTGCCGAAGCCGATGCCTCCCCGCGAGCTCCTTTTCCTAAGCTCAAATCTGCCATTACCGGCGGCGCATCTTCCTCGCTAGCCGGTGGTGCGAAGAAGACCAAGGGTCGTGGTTTCCGAGAAGAATCTGATCGCAACACCCGCCTTGCTGGGTCGGACTTCGATTCCCTCAAGTCTGCTGACGGCCCTGGCCCCCAACGATCTATTGAAGGATGGATCATTCTGGTAACTGGTGTACATGAAGAGGCACAGGAGGATGATCTACAAAATGCATTTGGTGAGTTTGGGGAGATAAAGAATTTGCATCTAAATCTCGACCGTCGTACTGGGTTTGTCAAGGGATATGCACTGATCGAATACGAGAACTTTGAGGAAGCAGAGAAAGCAATATCTGCCATGGATGGATCTGAACTTCTGACCCAAATTATCAATGTTGATTGGGCATTCAGCCATGGACCCATCAGAAGGAAGAACACAAGGCCTACTCGGGAACGACGTTCGAGGAGCCCTAGGAGGAGATATTGA

Protein sequence

MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGRGFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTRPTRERRSRSPRRRY

Homology

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BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot
Match: F4I9J7 (RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1)

HSP 1 Score: 250.4 bits (638), Expect = 1.7e-65
Identity = 141/206 (68.45%), Postives = 162/206 (78.64%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGGAKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S    AKKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPTRERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

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BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot
Match: B7FAL5 (RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.3e-65
Identity = 138/205 (67.32%), Postives = 164/205 (80.00%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAG--GAKKTK 60
           + +ADVEAVDF+P++DDLMDED    AD +P AP P+L+S I GG      G  G +KTK
Sbjct: 4   VTNADVEAVDFDPDDDDLMDEDA---ADPTP-APAPRLRSTIAGGGGGGGGGDDGQRKTK 63

Query: 61  GRGFREE-SDRNTRLAG----SDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQN 120
           GRGFR++ + R++RLAG    SDFDSL S  GPGP RSIEGWI+LVTGVHEEAQEDDL N
Sbjct: 64  GRGFRDDAAPRDSRLAGAGRASDFDSLGSDGGPGPVRSIEGWIVLVTGVHEEAQEDDLHN 123

Query: 121 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 180
            F +FG++KNLHLNLDRRTGFVKGYALIEYE FEEA+ AI A+DG+ELLTQII+VDWAFS
Sbjct: 124 IFRDFGQVKNLHLNLDRRTGFVKGYALIEYETFEEAQAAIKALDGTELLTQIISVDWAFS 183

Query: 181 HGPIRRKNTRPTRERRSRS-PRRRY 198
           +GP++R+N R    RRSRS PRRRY
Sbjct: 184 NGPVKRRNIRKRSPRRSRSPPRRRY 204

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BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot
Match: Q6ATR0 (RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 5.6e-40
Identity = 99/203 (48.77%), Postives = 130/203 (64.04%), Query Frame = 0


Query: 2   ASADVEAVDF---EPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTK 61
           A+ DVE VD+   E EE+D MDED           P P + S            G  +++
Sbjct: 4   AAEDVEFVDYDRDEEEEEDAMDEDDRGGGRGGRALPVPHIVSQ-----------GVMRSR 63

Query: 62  GRGFREESDRNTRLAGSD---FDSLKSADGP--GPQRSIEGWIILVTGVHEEAQEDDLQN 121
           GR       R+T +  S+   FDSL  A  P  GPQRSIEGWI+LV+GV E+A+EDDL N
Sbjct: 64  GRLL----GRSTSVLASNRDRFDSLADAGNPGHGPQRSIEGWILLVSGVKEDAEEDDLYN 123

Query: 122 AFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFS 181
            F +FG +K+LHLNL+RRTG+ KGYAL+EYE+FEEA+ AI AM+G++LLT+ + VDWAFS
Sbjct: 124 TFSDFGHVKDLHLNLERRTGYAKGYALVEYESFEEAQTAIKAMNGTQLLTRTVYVDWAFS 183

Query: 182 HGPIRRKNTRPTRERRSRSPRRR 197
            GPI++  +     RRSR+P RR
Sbjct: 184 RGPIQKLTSTRPLHRRSRTPPRR 191

[Close]

BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot
Match: Q6PH90 (RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 2.8e-39
Identity = 83/144 (57.64%), Postives = 106/144 (73.61%), Query Frame = 0


Query: 54  AKKTKGRGFREESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQ 113
           AKK KGRGF  +    TR+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ 
Sbjct: 32  AKKRKGRGFGADEGTRTRIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIH 91

Query: 114 NAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAF 173
           + FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q ++VDW F
Sbjct: 92  DKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPVSVDWGF 151

Query: 174 SHGPIRRKNTRPTRERRSRSPRRR 197
             GP   K  R +  RRSRSP RR
Sbjct: 152 VRGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot
Match: Q28BZ1 (RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1)

HSP 1 Score: 161.8 bits (408), Expect = 8.1e-39
Identity = 83/144 (57.64%), Postives = 105/144 (72.92%), Query Frame = 0


Query: 54  AKKTKGRGFREESDRNTRLAGSDFDSL-KSADGPGPQRSIEGWIILVTGVHEEAQEDDLQ 113
           AKK KGRGF  +     R+   D+DS+ +  D PGPQRS+EGWI+ VTGVHEEA E+D+ 
Sbjct: 32  AKKRKGRGFGADEGTRARIR-EDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIH 91

Query: 114 NAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAF 173
           + FGEFGEIKN+HLNLDRRTGF+KGYAL+EYE ++EA  A+  ++G +L+ Q I+VDW F
Sbjct: 92  DKFGEFGEIKNIHLNLDRRTGFLKGYALVEYETYKEALAAMEGLNGQDLMGQPISVDWGF 151

Query: 174 SHGPIRRKNTRPTRERRSRSPRRR 197
             GP   K  R +  RRSRSP RR
Sbjct: 152 VRGP--PKGKRRSGRRRSRSPERR 172

[Close]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL
Match: A0A6J1HB67 (RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 4.5e-101
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL
Match: A0A6J1JIZ0 (RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 SV=1)

HSP 1 Score: 373.2 bits (957), Expect = 6.5e-100
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL
Match: A0A0A0M2V3 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL
Match: A0A1S3BNH9 (RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL
Match: A0A6J1DNH7 (RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.2e-98
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA G KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]

BLAST of Lcy03g008970 vs. NCBI nr
Match: XP_022961208.1 (RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding protein Y14-like [Cucurbita pepo subsp. pepo] >KAG6590187.1 RNA-binding protein Y14, partial [Cucurbita argyrosperma subsp. sororia] >KAG7023840.1 RNA-binding protein Y14 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 377.1 bits (967), Expect = 9.3e-101
Identity = 194/197 (98.48%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. NCBI nr
Match: XP_022988215.1 (RNA-binding protein Y14A-like [Cucurbita maxima])

HSP 1 Score: 373.2 bits (957), Expect = 1.3e-99
Identity = 192/197 (97.46%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASP APFPKLKSAITGGASSSLAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPLAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRL GSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRQESDRNTRLTGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           I+NLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IRNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. NCBI nr
Match: XP_038880227.1 (RNA-binding protein Y14A [Benincasa hispida])

HSP 1 Score: 372.5 bits (955), Expect = 2.3e-99
Identity = 191/197 (96.95%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG+FGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGDFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRP RERRSRSPRRRY
Sbjct: 181 NTRPARERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. NCBI nr
Match: XP_004139049.1 (RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding protein 8A-B [Cucumis melo] >KGN66511.1 hypothetical protein Csa_007313 [Cucumis sativus])

HSP 1 Score: 371.7 bits (953), Expect = 3.9e-99
Identity = 191/197 (96.95%), Postives = 194/197 (98.48%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSL+GG KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLSGGPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAEKAISAMDG+ELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAEKAISAMDGAELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           N RP RERRSRSPRRRY
Sbjct: 181 NARPARERRSRSPRRRY 197

[Close]

BLAST of Lcy03g008970 vs. NCBI nr
Match: XP_022154366.1 (RNA-binding protein Y14A [Momordica charantia])

HSP 1 Score: 369.0 bits (946), Expect = 2.5e-98
Identity = 192/197 (97.46%), Postives = 195/197 (98.98%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLAGGAKKTKGR 60
           MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA G KKTKGR
Sbjct: 1   MASADVEAVDFEPEEDDLMDEDGAAEADASPRAPFPKLKSAITGGASSSLA-GPKKTKGR 60

Query: 61  GFREESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120
           GFR+ESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE
Sbjct: 61  GFRDESDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGE 120

Query: 121 IKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGPIRRK 180
           IKNLHLNLDRRTGFVKGYALIEYE+FEEAE+AISAMDGSELLTQIINVDWAFSHGPIRRK
Sbjct: 121 IKNLHLNLDRRTGFVKGYALIEYESFEEAERAISAMDGSELLTQIINVDWAFSHGPIRRK 180

Query: 181 NTRPTRERRSRSPRRRY 198
           NTRPTRERRSRSPRRRY
Sbjct: 181 NTRPTRERRSRSPRRRY 196

[Close]

BLAST of Lcy03g008970 vs. TAIR 10
Match: AT1G51510.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 250.4 bits (638), Expect = 1.2e-66
Identity = 141/206 (68.45%), Postives = 162/206 (78.64%), Query Frame = 0


Query: 1   MASADVEAVDFEPEEDDLMDEDGAA--EADASPRAPFPKLKSAITGGASSSLAGGAKKTK 60
           MA+ + EAVDFEPEEDDLMDE+G A   AD SPRA  P+LKSAI G    S    AKKTK
Sbjct: 1   MANIESEAVDFEPEEDDLMDEEGTAIDGADVSPRAGHPRLKSAIAGANGES----AKKTK 60

Query: 61  GRGFREE--SDRNTRLAGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFG 120
           GRGFREE  SDR  RL+  DF+SL S   PGPQRS+EGWIILV+GVHEE QE+D+ NAFG
Sbjct: 61  GRGFREEKDSDRQRRLSSRDFESLGSDGRPGPQRSVEGWIILVSGVHEETQEEDITNAFG 120

Query: 121 EFGEIKNLHLNLDRRTGFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWAFSHGP 180
           +FGEIKNL+LNLDRR+G+VKGYALIEYE  EEA+ AISAM+G+ELLTQ ++VDWAFS GP
Sbjct: 121 DFGEIKNLNLNLDRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFSSGP 180

Query: 181 -----IRRKNTRPTRERRSRSPRRRY 198
                 RRKN+R  R +RSRSPRRRY
Sbjct: 181 SGGESYRRKNSRYGRSQRSRSPRRRY 202

[Close]

BLAST of Lcy03g008970 vs. TAIR 10
Match: AT3G11400.1 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 29/99 (29.29%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 73  AGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRT 132
           AG+D    +SA G   +R  +   + VT + E+ +E DL   F  FG +  +++ +D++T
Sbjct: 195 AGAD----RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKT 254

Query: 133 GFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA 172
           G  +G+  + + + E+A++AI+ ++G      I+ V+WA
Sbjct: 255 GVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 289

[Close]

BLAST of Lcy03g008970 vs. TAIR 10
Match: AT3G11400.2 (eukaryotic translation initiation factor 3G1 )

HSP 1 Score: 58.5 bits (140), Expect = 6.8e-09
Identity = 29/99 (29.29%), Postives = 57/99 (57.58%), Query Frame = 0


Query: 73  AGSDFDSLKSADGPGPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRT 132
           AG+D    +SA G   +R  +   + VT + E+ +E DL   F  FG +  +++ +D++T
Sbjct: 222 AGAD----RSAVGSDMRRRNDENSVRVTNLSEDTREPDLMELFHPFGAVTRVYVAIDQKT 281

Query: 133 GFVKGYALIEYENFEEAEKAISAMDGSELLTQIINVDWA 172
           G  +G+  + + + E+A++AI+ ++G      I+ V+WA
Sbjct: 282 GVSRGFGFVNFVSREDAQRAINKLNGYGYDNLILRVEWA 316

[Close]

BLAST of Lcy03g008970 vs. TAIR 10
Match: AT5G64200.1 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

[Close]

BLAST of Lcy03g008970 vs. TAIR 10
Match: AT5G64200.2 (ortholog of human splicing factor SC35 )

HSP 1 Score: 57.8 bits (138), Expect = 1.2e-08
Identity = 37/117 (31.62%), Postives = 62/117 (52.99%), Query Frame = 0


Query: 87  GPQRSIEGWIILVTGVHEEAQEDDLQNAFGEFGEIKNLHLNLDRRTGFVKGYALIEYENF 146
           GP    + + +LV  +      DDL   F ++G++ ++ +  DRRTG  +G+A + Y+  
Sbjct: 8   GPPDISDTYSLLVLNITFRTTADDLYPLFAKYGKVVDVFIPRDRRTGDSRGFAFVRYKYK 67

Query: 147 EEAEKAISAMDGSELLTQIINVDWAFSHGPIRRKNTR--------PTRERRSRSPRR 196
           +EA KA+  +DG  +  + I V +A  +GP   K ++         +R  RSRSPRR
Sbjct: 68  DEAHKAVERLDGRVVDGREITVQFA-KYGPNAEKISKGRVVEPPPKSRRSRSRSPRR 123

The following BLAST results are available for this feature:

BLAST of Lcy03g008970 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4I9J7	1.7e-65	68.45	RNA-binding protein Y14 OS=Arabidopsis thaliana OX=3702 GN=Y14 PE=1 SV=1	[more]
B7FAL5	2.3e-65	67.32	RNA-binding protein Y14A OS=Oryza sativa subsp. japonica OX=39947 GN=Y14A PE=1 S...	[more]
Q6ATR0	5.6e-40	48.77	RNA-binding protein Y14B OS=Oryza sativa subsp. japonica OX=39947 GN=Y14B PE=1 S...	[more]
Q6PH90	2.8e-39	57.64	RNA-binding protein 8A-B OS=Xenopus laevis OX=8355 GN=rbm8a-b PE=2 SV=1	[more]
Q28BZ1	8.1e-39	57.64	RNA-binding protein 8A OS=Xenopus tropicalis OX=8364 GN=rbm8a PE=2 SV=1	[more]

BLAST of Lcy03g008970 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HB67	4.5e-101	98.48	RNA-binding protein Y14-like OS=Cucurbita moschata OX=3662 GN=LOC111461789 PE=4 ...	[more]
A0A6J1JIZ0	6.5e-100	97.46	RNA-binding protein Y14A-like OS=Cucurbita maxima OX=3661 GN=LOC111485519 PE=4 S...	[more]
A0A0A0M2V3	1.9e-99	96.95	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G616290 PE=4 SV...	[more]
A0A1S3BNH9	1.9e-99	96.95	RNA-binding protein 8A-B OS=Cucumis melo OX=3656 GN=LOC103492008 PE=4 SV=1	[more]
A0A6J1DNH7	1.2e-98	97.46	RNA-binding protein Y14A OS=Momordica charantia OX=3673 GN=LOC111021647 PE=4 SV=...	[more]

BLAST of Lcy03g008970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022961208.1	9.3e-101	98.48	RNA-binding protein Y14-like [Cucurbita moschata] >XP_023516370.1 RNA-binding pr...	[more]
XP_022988215.1	1.3e-99	97.46	RNA-binding protein Y14A-like [Cucurbita maxima]	[more]
XP_038880227.1	2.3e-99	96.95	RNA-binding protein Y14A [Benincasa hispida]	[more]
XP_004139049.1	3.9e-99	96.95	RNA-binding protein Y14 [Cucumis sativus] >XP_008450386.1 PREDICTED: RNA-binding...	[more]
XP_022154366.1	2.5e-98	97.46	RNA-binding protein Y14A [Momordica charantia]	[more]

BLAST of Lcy03g008970 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G51510.1	1.2e-66	68.45	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G11400.1	6.8e-09	29.29	eukaryotic translation initiation factor 3G1	[more]
AT3G11400.2	6.8e-09	29.29	eukaryotic translation initiation factor 3G1	[more]
AT5G64200.1	1.2e-08	31.62	ortholog of human splicing factor SC35	[more]
AT5G64200.2	1.2e-08	31.62	ortholog of human splicing factor SC35	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008111	RNA-binding motif protein 8	PRINTS	PR01738	RNABINDINGM8	coord: 86..100 score: 79.33 coord: 160..172 score: 55.38 coord: 142..158 score: 44.12 coord: 51..63 score: 58.46
IPR008111	RNA-binding motif protein 8	PANTHER	PTHR45894	RNA-BINDING PROTEIN 8A	coord: 2..197
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 96..169 e-value: 2.2E-19 score: 80.4
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 97..161 e-value: 9.5E-16 score: 57.4
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 95..173 score: 15.834971
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 8..190 e-value: 2.4E-30 score: 107.6
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 179..197
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 57..74
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..88
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 177..197
None	No IPR available	PANTHER	PTHR45894:SF6	RNA-BINDING PROTEIN Y14A-LIKE	coord: 2..197
IPR033744	RBM8, RNA recognition motif	CDD	cd12324	RRM_RBM8	coord: 89..176 e-value: 2.30496E-60 score: 181.262
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 88..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g008970.1	Lcy03g008970.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010628	positive regulation of gene expression
biological_process	GO:0008380	RNA splicing
biological_process	GO:0006396	RNA processing
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0035145	exon-exon junction complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003729	mRNA binding
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0003723	RNA binding