Lcy03g008780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g008780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	GATA transcription factor
Location	Chr03: 41261279 .. 41261926 (+)
RNA-Seq Expression	Lcy03g008780
Synteny	Lcy03g008780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGAGTTTGGAGGCTAAGGCTTTGAAATCAAGCTTCCACTGGGAATTAGCGATGAAACTTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGAAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCATTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTTGGAGAGGACGATTCGAACTCGCTTCTCGCCATTGAGCTTGCTATTCTGGTAAATTAATTTCTGGGTTTTTGTTTTGGTTCGATTTCAGAAGTATTTAGTGGAACAAAAAATTGAAATCGAAATCCCCCTCCTTCTGAGGGCGATGCTCTCGCGACCGCACCCCTTTTTTCAAACAAATCCCCCCCCACCGTCTTCTTCAAACCCCGTCGCCACAACCCTTATTCTTCTTCTTAGCCTAAATCAACCTACCCGAACATCGCCGCTTTGAAGCTACTGTGAGTCGTCGCTGCTCGTATGGGTTTTGGTTCTTTTTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAA

mRNA sequence

ATGGAGAGTTTGGAGGCTAAGGCTTTGAAATCAAGCTTCCACTGGGAATTAGCGATGAAACTTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGAAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCATTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTTGGAGAGGACGATTCGAACTCGCTTCTCGCCATTGAGCTTGCTATTCTGGTAAATTAATTTCTGGGTTTTTGTTTTGGTTCGATTTCAGAAGTATTTAGTGGAACAAAAAATTGAAATCGAAATCCCCCTCCTTCTGAGGGCGATGCTCTCGCGACCGCACCCCTTTTTTCAAACAAATCCCCCCCCACCGTCTTCTTCAAACCCCGTCGCCACAACCCTTATTCTTCTTCTTAGCCTAAATCAACCTACCCGAACATCGCCGCTTTGAAGCTACTGTGAGTCGTCGCTGCTCGTATGGGTTTTGGTTCTTTTTTTTTTCTCAGATCTGAAGATGGGAGCGGATTCAGGCACACGCGAGAGGAA

Coding sequence (CDS)

ATGGAGAGTTTGGAGGCTAAGGCTTTGAAATCAAGCTTCCACTGGGAATTAGCGATGAAACTTTCTCAAGAAGACGATTTGGTGGAGGAAATTTTGGATTTCAATGGAGCTAATCTCGTCGCCGGCGAGGAGTGTGAGGTCGACGAGTTTTTGAACTTCTATAATGGTGATTTCGAACATGGGTCTGCTTTGAGAGTTCAGAAAGATGACGATGACGACGAGTTTGAGAAGAATCGGGTCTCTGTTTCATTGGATTCGAACCAGTCTGGCGAGTTTTTGGACTTTGGAGAGGACGATTCGAACTCGCTTCTCGCCATTGAGCTTGCTATTCTGGTAAATTAA

Protein sequence

MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEHGSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAILVN

Homology

[Close]

BLAST of Lcy03g008780 vs. ExPASy TrEMBL
Match: A0A6J1L063 (GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111499842 PE=3 SV=1)

HSP 1 Score: 153.3 bits (386), Expect = 6.1e-34
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYQEFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. ExPASy TrEMBL
Match: A0A6J1G8K4 (GATA transcription factor OS=Cucurbita moschata OX=3662 GN=LOC111451842 PE=3 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.0e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYREFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. ExPASy TrEMBL
Match: A0A6J1JGW2 (GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAMK +Q DD+VE+    NGA+LVAGE+ EVDEFLNF +GDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV++DDD +EFEKNR+SVS  SNQSG F   GE+ S +++A+ELAI
Sbjct: 61  GSALRVEEDDDYEEFEKNRLSVSPYSNQSGGFPTAGEEGSKAVVAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. ExPASy TrEMBL
Match: A0A6J1JGE0 (GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAMK +Q DD+VE+    NGA+LVAGE+ EVDEFLNF +GDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV++DDD +EFEKNR+SVS  SNQSG F   GE+ S +++A+ELAI
Sbjct: 61  GSALRVEEDDDYEEFEKNRLSVSPYSNQSGGFPTAGEEGSKAVVAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. ExPASy TrEMBL
Match: A0A6J1J7X0 (GATA transcription factor 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=4 SV=1)

HSP 1 Score: 144.4 bits (363), Expect = 2.8e-31
Identity = 77/110 (70.00%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAMK +Q DD+VE+    NGA+LVAGE+ EVDEFLNF +GDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMKFAQPDDMVEDDECSNGADLVAGEDFEVDEFLNFSHGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV++DDD +EFEKNR+SVS  SNQSG F   GE+ S +++A+ELAI
Sbjct: 61  GSALRVEEDDDYEEFEKNRLSVSPYSNQSGGFPTAGEEGSKAVVAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. NCBI nr
Match: XP_023007305.1 (GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcription factor 5-like [Cucurbita maxima])

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYQEFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. NCBI nr
Match: KAG7035058.1 (GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 152.9 bits (385), Expect = 1.6e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYHEFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. NCBI nr
Match: KAG6605045.1 (GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYREFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. NCBI nr
Match: XP_022948191.1 (GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA transcription factor 5-like [Cucurbita moschata])

HSP 1 Score: 152.5 bits (384), Expect = 2.1e-33
Identity = 83/110 (75.45%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGEE EVDEF NF NGDFEH
Sbjct: 1   MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEEFEVDEFFNFSNGDFEH 60

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 61  GSALRVEENDDYREFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 110

[Close]

BLAST of Lcy03g008780 vs. NCBI nr
Match: XP_023532489.1 (GATA transcription factor 5-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 151.4 bits (381), Expect = 4.8e-33
Identity = 82/110 (74.55%), Postives = 92/110 (83.64%), Query Frame = 0


Query: 1   MESLEAKALKSSFHWELAMKLSQEDDLVEEILDFNGANLVAGEECEVDEFLNFYNGDFEH 60
           ME LEAKALKSSFHWELAM+ +Q+D LVEEI   NGANLVAGE+ EVDEF NF NGDFEH
Sbjct: 13  MECLEAKALKSSFHWELAMESAQQDALVEEIWCLNGANLVAGEDFEVDEFFNFSNGDFEH 72

Query: 61  GSALRVQKDDDDDEFEKNRVSVSLDSNQSGEFLDFGEDDSNSLLAIELAI 111
           GSALRV+++DD  EFEK+ VSVS DSNQSGE    GE+DS SLLA+ELAI
Sbjct: 73  GSALRVEENDDYREFEKDLVSVSSDSNQSGEIPAAGEEDSKSLLAVELAI 122

The following BLAST results are available for this feature:

BLAST of Lcy03g008780 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g008780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1L063	6.1e-34	75.45	GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111499842 PE=3 SV=1	[more]
A0A6J1G8K4	1.0e-33	75.45	GATA transcription factor OS=Cucurbita moschata OX=3662 GN=LOC111451842 PE=3 SV=...	[more]
A0A6J1JGW2	2.8e-31	70.00	GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1	[more]
A0A6J1JGE0	2.8e-31	70.00	GATA transcription factor OS=Cucurbita maxima OX=3661 GN=LOC111484266 PE=3 SV=1	[more]
A0A6J1J7X0	2.8e-31	70.00	GATA transcription factor 5-like isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC11...	[more]

BLAST of Lcy03g008780 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023007305.1	1.3e-33	75.45	GATA transcription factor 5-like [Cucurbita maxima] >XP_023007306.1 GATA transcr...	[more]
KAG7035058.1	1.6e-33	75.45	GATA transcription factor 5 [Cucurbita argyrosperma subsp. argyrosperma]	[more]
KAG6605045.1	2.1e-33	75.45	GATA transcription factor 5, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_022948191.1	2.1e-33	75.45	GATA transcription factor 5-like [Cucurbita moschata] >XP_022948192.1 GATA trans...	[more]
XP_023532489.1	4.8e-33	74.55	GATA transcription factor 5-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Lcy03g008780 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g008780.1	Lcy03g008780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
cellular_component	GO:0005634	nucleus
molecular_function	GO:0043565	sequence-specific DNA binding
molecular_function	GO:0008270	zinc ion binding