Lcy03g008580 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g008580
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 40839079 .. 40839556 (-)
RNA-Seq ExpressionLcy03g008580
SyntenyLcy03g008580
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATCTCTCTCATTCCTTCAACTCTCTCTCTCTCTCTAAAATTCTCTCTCTCTCTCTCCTCTTCTGAAACTATGCCTCGGCCGCGACACCAACGTCAGCCCTCTCAAGTTCTCCCGCCTGAGCTGATCTCCGGCGAGGATCCCTCCCAGGTCTTGGACTTCGGCCGGGCTGTCGCCGGAGCCGTTTCCGGCCAACCCCATCAACCACCTGAAGCTGCTGCAAATGCCGCCGCCGCCGCCGCCGTCCTTCAGAGTTCCAAATCTCCTGCCGGCCAGCAGGTCTCCGGCGCCGCCCACTTCTCCCAGCTCCCCAAAACGCCGCCGTCTGCTACTTGAACTCATCTCTCTCTCTCTCTCTCTAGATTTCATGTCTCTGTAATGGTGGGTTTTTGTTTTAGGTGACTGAGAGTTTCTCTCTCTCTTTTCTGTTTGACCCAAAAATAAATTTGATGAAATGGAAGAAGGGTTGATGCTTTGTTCA

mRNA sequence

ATCTCTCTCATTCCTTCAACTCTCTCTCTCTCTCTAAAATTCTCTCTCTCTCTCTCCTCTTCTGAAACTATGCCTCGGCCGCGACACCAACGTCAGCCCTCTCAAGTTCTCCCGCCTGAGCTGATCTCCGGCGAGGATCCCTCCCAGGTCTTGGACTTCGGCCGGGCTGTCGCCGGAGCCGTTTCCGGCCAACCCCATCAACCACCTGAAGCTGCTGCAAATGCCGCCGCCGCCGCCGCCGTCCTTCAGAGTTCCAAATCTCCTGCCGGCCAGCAGGTCTCCGGCGCCGCCCACTTCTCCCAGCTCCCCAAAACGCCGCCGTCTGCTACTTGAACTCATCTCTCTCTCTCTCTCTCTAGATTTCATGTCTCTGTAATGGTGGGTTTTTGTTTTAGGTGACTGAGAGTTTCTCTCTCTCTTTTCTGTTTGACCCAAAAATAAATTTGATGAAATGGAAGAAGGGTTGATGCTTTGTTCA

Coding sequence (CDS)

ATGCCTCGGCCGCGACACCAACGTCAGCCCTCTCAAGTTCTCCCGCCTGAGCTGATCTCCGGCGAGGATCCCTCCCAGGTCTTGGACTTCGGCCGGGCTGTCGCCGGAGCCGTTTCCGGCCAACCCCATCAACCACCTGAAGCTGCTGCAAATGCCGCCGCCGCCGCCGCCGTCCTTCAGAGTTCCAAATCTCCTGCCGGCCAGCAGGTCTCCGGCGCCGCCCACTTCTCCCAGCTCCCCAAAACGCCGCCGTCTGCTACTTGA

Protein sequence

MPRPRHQRQPSQVLPPELISGEDPSQVLDFGRAVAGAVSGQPHQPPEAAANAAAAAAVLQSSKSPAGQQVSGAAHFSQLPKTPPSAT
Homology
BLAST of Lcy03g008580 vs. ExPASy TrEMBL
Match: A0A0A0M0A1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 4.4e-24
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGEDPSQVLDFGRAVAGAVSGQPHQPPEAAANAAAAAA--- 60
          MPRPRHQRQ SQVLPP+ IS EDPSQ+LDF   VAGAVSGQPHQP +A ANAAAAAA   
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQSSKSPAGQQVSGAAHFSQLPKTPPS 86
          VLQ SK+PAGQ+ SGA HFSQLPKT PS
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

BLAST of Lcy03g008580 vs. NCBI nr
Match: KGN66547.1 (hypothetical protein Csa_007065 [Cucumis sativus])

HSP 1 Score: 120.2 bits (300), Expect = 9.1e-24
Identity = 68/88 (77.27%), Postives = 73/88 (82.95%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGEDPSQVLDFGRAVAGAVSGQPHQPPEAAANAAAAAA--- 60
          MPRPRHQRQ SQVLPP+ IS EDPSQ+LDF   VAGAVSGQPHQP +A ANAAAAAA   
Sbjct: 1  MPRPRHQRQLSQVLPPDFISAEDPSQILDFSIGVAGAVSGQPHQPSQATANAAAAAAAAT 60

Query: 61 VLQSSKSPAGQQVSGAAHFSQLPKTPPS 86
          VLQ SK+PAGQ+ SGA HFSQLPKT PS
Sbjct: 61 VLQRSKNPAGQEGSGAGHFSQLPKTAPS 88

BLAST of Lcy03g008580 vs. NCBI nr
Match: KAG6590166.1 (hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 116.3 bits (290), Expect = 1.3e-22
Identity = 65/87 (74.71%), Postives = 71/87 (81.61%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGEDPSQVLDFGRAVAGAVSGQPHQPPEAAANAAAAAAVLQ 60
          MPRPRHQRQPSQVLPPELISG DPSQ+LDFG+AVA  VSGQPH+  EAA N A AAAVLQ
Sbjct: 1  MPRPRHQRQPSQVLPPELISGVDPSQILDFGQAVARTVSGQPHKATEAATNVATAAAVLQ 60

Query: 61 SSKSPAGQQ--VSGAAHFSQLPKTPPS 86
           SK+  GQ+   SG+ HF QLPKTPPS
Sbjct: 61 RSKTSGGQEGSGSGSGHFPQLPKTPPS 87

BLAST of Lcy03g008580 vs. NCBI nr
Match: KAG6588222.1 (hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.7 bits (278), Expect = 3.2e-21
Identity = 68/92 (73.91%), Postives = 71/92 (77.17%), Query Frame = 0

Query: 1  MPRPRHQRQPSQVLPPELISGEDPSQVLDFGRAVAGAVSGQPHQ-PPEAAANAAAAA--- 60
          MPRPRH RQPSQVLPPELISGEDPSQ+LDF R VAGA SGQPHQ  PEAAA AAAAA   
Sbjct: 1  MPRPRHHRQPSQVLPPELISGEDPSQILDFERPVAGAFSGQPHQAAPEAAAAAAAAANAA 60

Query: 61 --AVLQSSKSPAGQQVSGAAHFSQLPKTPPSA 87
             V+Q SK  A Q+VSGA  F QL KTPPSA
Sbjct: 61 ASTVIQQSKIAASQEVSGAEQFPQLTKTPPSA 92

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0M0A14.4e-2477.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629040 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KGN66547.19.1e-2477.27hypothetical protein Csa_007065 [Cucumis sativus][more]
KAG6590166.11.3e-2274.71hypothetical protein SDJN03_15589, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG6588222.13.2e-2173.91hypothetical protein SDJN03_16787, partial [Cucurbita argyrosperma subsp. sorori... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..24
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 61..87

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g008580.1Lcy03g008580.1mRNA