Lcy03g008560 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g008560
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 40796541 .. 40796849 (+)
RNA-Seq ExpressionLcy03g008560
SyntenyLcy03g008560
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGATGGCAGGTGATACTGTTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTTGGCGTCGTATTCTATGCGGGTAAGAATCTACATTACCTGAACTGGATGATGGTGGGTTGGTTTCAAATCATGTTTGGTTTGGATGCTACTACACTCTTTGATCTGAACCATCCTTACTTTCAGTTGCGAAAGGGGGTTGGTATTATGCACTATTTTGTTACGAGTGAACTGGAATCTTTAGGAACTTTCTAG

mRNA sequence

ATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGATGGCAGGTGATACTGTTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTTGGCGTCGTATTCTATGCGGGTAAGAATCTACATTACCTGAACTGGATGATGGTGGGTTGGTTTCAAATCATGTTTGGTTTGGATGCTACTACACTCTTTGATCTGAACCATCCTTACTTTCAGTTGCGAAAGGGGGTTGGTATTATGCACTATTTTGTTACGAGTGAACTGGAATCTTTAGGAACTTTCTAG

Coding sequence (CDS)

ATGGTGTACTCAGTAATCTACTTAACTGTCGAGTCTAGCTGTCGAAATTGCTTTTACTATCATCCGATGGCAGGTGATACTGTTGTGCTGCTTGGCAAGTTGTCTCTGAAGACTTTTGGCGTCGTATTCTATGCGGGTAAGAATCTACATTACCTGAACTGGATGATGGTGGGTTGGTTTCAAATCATGTTTGGTTTGGATGCTACTACACTCTTTGATCTGAACCATCCTTACTTTCAGTTGCGAAAGGGGGTTGGTATTATGCACTATTTTGTTACGAGTGAACTGGAATCTTTAGGAACTTTCTAG

Protein sequence

MVYSVIYLTVESSCRNCFYYHPMAGDTVVLLGKLSLKTFGVVFYAGKNLHYLNWMMVGWFQIMFGLDATTLFDLNHPYFQLRKGVGIMHYFVTSELESLGTF
Homology
[Close]
BLAST of Lcy03g008560 vs. ExPASy TrEMBL
Match: A0A0A0LZW1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.0e-07
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MVYSVIYLTVESSCRNCFYYHPMAG-DTVVLLGKLSL 37
          MVYSVIYLTVESSCRNCFYYHP AG D VVLLGK  L
Sbjct: 25 MVYSVIYLTVESSCRNCFYYHPKAGDDIVVLLGKFCL 61

[Close]
BLAST of Lcy03g008560 vs. NCBI nr
Match: KGN66549.1 (hypothetical protein Csa_007171 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 4.1e-07
Identity = 32/37 (86.49%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 1  MVYSVIYLTVESSCRNCFYYHPMAG-DTVVLLGKLSL 37
          MVYSVIYLTVESSCRNCFYYHP AG D VVLLGK  L
Sbjct: 25 MVYSVIYLTVESSCRNCFYYHPKAGDDIVVLLGKFCL 61

The following BLAST results are available for this feature:
BLAST of Lcy03g008560 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g008560 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LZW12.0e-0786.49Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G629060 PE=4 SV=1[more]
BLAST of Lcy03g008560 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN66549.14.1e-0786.49hypothetical protein Csa_007171 [Cucumis sativus][more]
BLAST of Lcy03g008560 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g008560.1Lcy03g008560.1mRNA