Lcy03g007950 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g007950
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Myb-related transcription factor
Location	Chr03: 39378717 .. 39378973 (+)
RNA-Seq Expression	Lcy03g007950
Synteny	Lcy03g007950

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGAGAGCTCGAGCTCCTTGCTGTGAGAAAATGAGACTAAACATGGGGTTATGGATAGTTGAAGAAGATGAAATTTTGATCTCTTATATCAATAAACATGGCCATAGCAACTGGTGTGTCCTTCCAAAGCTTGTTGTTCAGTTCGTGCATAGGTTTGATCAAATTCAGCCATGGCAATGACTTGTTTCTTTGTTTTAATCTCTTTACATTTTCTCATTTTCTGTAGGCCTTTTGCGATGTGGAAAGAGTTGTAG

mRNA sequence

ATGGTGAGAGCTCGAGCTCCTTGCTGTGAGAAAATGAGACTAAACATGGGGTTATGGATAGTTGAAGAAGATGAAATTTTGATCTCTTATATCAATAAACATGGCCATAGCAACTGGTGTGTCCTTCCAAAGCTTGTTGTTCAGTTCGTGCATAGGCCTTTTGCGATGTGGAAAGAGTTGTAG

Coding sequence (CDS)

ATGGTGAGAGCTCGAGCTCCTTGCTGTGAGAAAATGAGACTAAACATGGGGTTATGGATAGTTGAAGAAGATGAAATTTTGATCTCTTATATCAATAAACATGGCCATAGCAACTGGTGTGTCCTTCCAAAGCTTGTTGTTCAGTTCGTGCATAGGCCTTTTGCGATGTGGAAAGAGTTGTAG

Protein sequence

MVRARAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKLVVQFVHRPFAMWKEL

Homology

[Close]

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot
Match: Q9LTC4 (Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 1.8e-10
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM L  G W  EED+IL+S+I  HGHSNW  LPK
Sbjct: 3  RAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPK 42

[Close]

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot
Match: Q6K1S6 (Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=1 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 3.1e-10
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM L  G W  EED IL+++I +HGHSNW  LP+
Sbjct: 3  RAPCCEKMGLKRGPWTAEEDRILVAHIERHGHSNWRALPR 42

[Close]

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot
Match: P20024 (Myb-related protein Zm1 OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 5.3e-10
Identity = 27/44 (61.36%), Postives = 31/44 (70.45%), Query Frame = 0


Query: 1  MVRARAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          M R RAPCC K+ LN G W  +ED  LI+YI KHGH+NW  LPK
Sbjct: 1  MGRGRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPK 44

[Close]

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot
Match: Q9SJX8 (Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 7.0e-10
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM +  G W  EED+ILI+YI+ +GHSNW  LPK
Sbjct: 3  RAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPK 42

[Close]

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot
Match: Q7XBH4 (Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 SV=2)

HSP 1 Score: 63.9 bits (154), Expect = 7.0e-10
Identity = 24/40 (60.00%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM L  G W  EED++L+++I +HGH NW  LPK
Sbjct: 3  RAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPK 42

[Close]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL
Match: A0A5A7U063 (Myb-related protein Myb4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold434G001590 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTAEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL
Match: A0A0S2I8B4 (Myb-related transcription factor OS=Citrullus lanatus OX=3654 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTTEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL
Match: A0A1S3AW89 (myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103483593 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.1e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTAEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL
Match: A0A0A0L8A0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G135050 PE=4 SV=1)

HSP 1 Score: 73.9 bits (180), Expect = 2.5e-10
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILI+YINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTTEEDEILIAYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL
Match: A0A6J1DF45 (transcription factor MYB30-like OS=Momordica charantia OX=3673 GN=LOC111019490 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.2e-10
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEKM L  G W  EED+ILISYIN+HGHSNW  LPKL
Sbjct: 3  RAPCCEKMGLKKGPWTAEEDQILISYINEHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. NCBI nr
Match: XP_038902988.1 (transcription factor MYB14-like [Benincasa hispida])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTTEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. NCBI nr
Match: ALO18749.1 (myb-related transcription factor [Citrullus lanatus])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTTEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. NCBI nr
Match: KAA0049253.1 (myb-related protein Myb4-like [Cucumis melo var. makuwa] >TYK17305.1 myb-related protein Myb4-like [Cucumis melo var. makuwa])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTAEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. NCBI nr
Match: XP_008438526.1 (PREDICTED: myb-related protein Myb4-like [Cucumis melo])

HSP 1 Score: 75.1 bits (183), Expect = 2.3e-10
Identity = 32/41 (78.05%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILISYINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTAEEDEILISYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. NCBI nr
Match: XP_011650935.1 (transcription factor MYB30 [Cucumis sativus] >KAE8650329.1 hypothetical protein Csa_010088 [Cucumis sativus])

HSP 1 Score: 73.9 bits (180), Expect = 5.1e-10
Identity = 31/41 (75.61%), Postives = 33/41 (80.49%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          RAPCCEK+ L  G W  EEDEILI+YINKHGHSNW  LPKL
Sbjct: 3  RAPCCEKLGLKKGPWTTEEDEILIAYINKHGHSNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. TAIR 10
Match: AT3G23250.1 (myb domain protein 15 )

HSP 1 Score: 65.9 bits (159), Expect = 1.3e-11
Identity = 27/40 (67.50%), Postives = 30/40 (75.00%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM L  G W  EED+IL+S+I  HGHSNW  LPK
Sbjct: 3  RAPCCEKMGLKRGPWTPEEDQILVSFILNHGHSNWRALPK 42

[Close]

BLAST of Lcy03g007950 vs. TAIR 10
Match: AT2G31180.1 (myb domain protein 14 )

HSP 1 Score: 63.9 bits (154), Expect = 4.9e-11
Identity = 26/40 (65.00%), Postives = 31/40 (77.50%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          RAPCCEKM +  G W  EED+ILI+YI+ +GHSNW  LPK
Sbjct: 3  RAPCCEKMGVKRGPWTPEEDQILINYIHLYGHSNWRALPK 42

[Close]

BLAST of Lcy03g007950 vs. TAIR 10
Match: AT1G06180.1 (myb domain protein 13 )

HSP 1 Score: 62.8 bits (151), Expect = 1.1e-10
Identity = 26/41 (63.41%), Postives = 29/41 (70.73%), Query Frame = 0


Query: 5  RAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          R PCCEK+ L  G W  EED ILI+YI+ HGH NW  LPKL
Sbjct: 3  RRPCCEKIGLKKGPWSAEEDRILINYISLHGHPNWRALPKL 43

[Close]

BLAST of Lcy03g007950 vs. TAIR 10
Match: AT4G21440.1 (MYB-like 102 )

HSP 1 Score: 60.1 bits (144), Expect = 7.1e-10
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 0


Query: 4  ARAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPK 45
          AR+PCCEK  L  G W  EED+ L+ YI KHG+ NW  LPK
Sbjct: 2  ARSPCCEKNGLKKGPWTSEEDQKLVDYIQKHGYGNWRTLPK 42

[Close]

BLAST of Lcy03g007950 vs. TAIR 10
Match: AT1G56160.1 (myb domain protein 72 )

HSP 1 Score: 59.7 bits (143), Expect = 9.3e-10
Identity = 24/45 (53.33%), Postives = 31/45 (68.89%), Query Frame = 0


Query: 1  MVRARAPCCEKMRLNMGLWIVEEDEILISYINKHGHSNWCVLPKL 46
          M + RAPCC+K ++  G W  +ED  LI++I KHGH NW  LPKL
Sbjct: 1  MGKGRAPCCDKNKVKRGPWSPQEDLTLITFIQKHGHQNWRSLPKL 45

The following BLAST results are available for this feature:

BLAST of Lcy03g007950 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTC4	1.8e-10	67.50	Transcription factor MYB15 OS=Arabidopsis thaliana OX=3702 GN=MYB15 PE=1 SV=1	[more]
Q6K1S6	3.1e-10	62.50	Transcription factor MYB30 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB30 PE=...	[more]
P20024	5.3e-10	61.36	Myb-related protein Zm1 OS=Zea mays OX=4577 PE=2 SV=1	[more]
Q9SJX8	7.0e-10	65.00	Transcription factor MYB14 OS=Arabidopsis thaliana OX=3702 GN=MYB14 PE=2 SV=1	[more]
Q7XBH4	7.0e-10	60.00	Transcription factor MYB4 OS=Oryza sativa subsp. japonica OX=39947 GN=MYB4 PE=2 ...	[more]

BLAST of Lcy03g007950 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U063	1.1e-10	78.05	Myb-related protein Myb4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A0S2I8B4	1.1e-10	78.05	Myb-related transcription factor OS=Citrullus lanatus OX=3654 PE=4 SV=1	[more]
A0A1S3AW89	1.1e-10	78.05	myb-related protein Myb4-like OS=Cucumis melo OX=3656 GN=LOC103483593 PE=4 SV=1	[more]
A0A0A0L8A0	2.5e-10	75.61	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G135050 PE=4 SV=1	[more]
A0A6J1DF45	3.2e-10	75.61	transcription factor MYB30-like OS=Momordica charantia OX=3673 GN=LOC111019490 P...	[more]

BLAST of Lcy03g007950 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038902988.1	2.3e-10	78.05	transcription factor MYB14-like [Benincasa hispida]	[more]
ALO18749.1	2.3e-10	78.05	myb-related transcription factor [Citrullus lanatus]	[more]
KAA0049253.1	2.3e-10	78.05	myb-related protein Myb4-like [Cucumis melo var. makuwa] >TYK17305.1 myb-related...	[more]
XP_008438526.1	2.3e-10	78.05	PREDICTED: myb-related protein Myb4-like [Cucumis melo]	[more]
XP_011650935.1	5.1e-10	75.61	transcription factor MYB30 [Cucumis sativus] >KAE8650329.1 hypothetical protein ...	[more]

BLAST of Lcy03g007950 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G23250.1	1.3e-11	67.50	myb domain protein 15	[more]
AT2G31180.1	4.9e-11	65.00	myb domain protein 14	[more]
AT1G06180.1	1.1e-10	63.41	myb domain protein 13	[more]
AT4G21440.1	7.1e-10	58.54	MYB-like 102	[more]
AT1G56160.1	9.3e-10	53.33	myb domain protein 72	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	1.10.10.60		coord: 9..54 e-value: 3.3E-6 score: 28.5
None	No IPR available	PANTHER	PTHR10641:SF1272	TRANSCRIPTION FACTOR MYB15-3	coord: 4..45
None	No IPR available	PANTHER	PTHR10641	MYB FAMILY TRANSCRIPTION FACTOR	coord: 4..45
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 11..52 score: 6.10953
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 19..46 e-value: 6.62652E-4 score: 31.3918
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 10..45

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g007950.1	Lcy03g007950.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0009409	response to cold
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009414	response to water deprivation