Lcy03g006930 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g006930
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Glutamate receptor
Location	Chr03: 36172623 .. 36172972 (+)
RNA-Seq Expression	Lcy03g006930
Synteny	Lcy03g006930

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTCTATAGATCTCTGGAGGTCTGAATACTACCTTTGCGAGTCCGCCACTTAATCAATTGCTCAATCAAATTACCTCAGTCAAGATGGACAAAACAAATTTTCTTCTTTAGCAAAACCTAGCCCTTCCAATTCTTCGAGGCTACAAGTTAGAGGGATATCTCACCGGGGAAAAAGCTTGCCCACCGAAAAGCATCACTCTAACACAAAGTCAAGATGCTACCAGTACAGAAAATATTGAAGCACAACAGATTCCGAACCCAGAATATGAGTCATGGATGGCAGTTGACCAATTGCTCTTGGGTTGGCTTTATAACTCAATGACTCCAGACGTGGCTGTTCACATGTAA

mRNA sequence

ATGCTCTATAGATCTCTGGAGCAAAACCTAGCCCTTCCAATTCTTCGAGGCTACAAGTTAGAGGGATATCTCACCGGGGAAAAAGCTTGCCCACCGAAAAGCATCACTCTAACACAAAGTCAAGATGCTACCAGTACAGAAAATATTGAAGCACAACAGATTCCGAACCCAGAATATGAGTCATGGATGGCAGTTGACCAATTGCTCTTGGGTTGGCTTTATAACTCAATGACTCCAGACGTGGCTGTTCACATGTAA

Coding sequence (CDS)

ATGCTCTATAGATCTCTGGAGCAAAACCTAGCCCTTCCAATTCTTCGAGGCTACAAGTTAGAGGGATATCTCACCGGGGAAAAAGCTTGCCCACCGAAAAGCATCACTCTAACACAAAGTCAAGATGCTACCAGTACAGAAAATATTGAAGCACAACAGATTCCGAACCCAGAATATGAGTCATGGATGGCAGTTGACCAATTGCTCTTGGGTTGGCTTTATAACTCAATGACTCCAGACGTGGCTGTTCACATGTAA

Protein sequence

MLYRSLEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTENIEAQQIPNPEYESWMAVDQLLLGWLYNSMTPDVAVHM

Homology

[Close]

BLAST of Lcy03g006930 vs. ExPASy TrEMBL
Match: A0A5A7VCS1 (Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold790G00430 PE=4 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 1.8e-14
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDAT------------------STE 65
           L + LALPIL+GYKLEG+LTGEK CP K +T+T S  +                   ++ 
Sbjct: 43  LWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASS 102

Query: 66  NIEAQQIPNPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           ++ A  I NP +E W+  D LLLGWLYNSMTP VAV +
Sbjct: 103 SMSAPAIINPLFEQWIMTDLLLLGWLYNSMTPKVAVQL 140

[Close]

BLAST of Lcy03g006930 vs. ExPASy TrEMBL
Match: A0A5C7GVK1 (Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027676 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.2e-14
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTENIEAQQIPNPEYESWMAV 65
           L +NL LP++RG ++EGY+TG K CPP+ I     Q+A  T         NPEYE W+  
Sbjct: 186 LWKNLVLPVIRGNRMEGYITGAKKCPPEFIITDLEQEADETLE------ENPEYEDWIVH 245

Query: 66  DQLLLGWLYNSMTPDVA 83
           DQ+LLGWLYNSM PDVA
Sbjct: 246 DQILLGWLYNSMEPDVA 256

[Close]

BLAST of Lcy03g006930 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 85.9 bits (211), Expect = 9.0e-14
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQS-QDATSTENIEAQQIPNPEYESWMA 65
           L QNLALPILR YKL  YLTG+K CPP  +  T +  +   + + ++    NP YE+W+ 
Sbjct: 46  LWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIV 105

Query: 66  VDQLLLGWLYNSMTPDVAVHM 86
           VD+LLLGWLYNSM  DVA+ +
Sbjct: 106 VDKLLLGWLYNSMAADVAMQV 126

[Close]

BLAST of Lcy03g006930 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.6e-13
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTE----------NIEAQQIP 65
           L + LALPIL+GYKLEG+LTGE  CP   +    S + T TE          +    +I 
Sbjct: 42  LWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIV 101

Query: 66  NPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           N  +E W+  D LLLGWLYNSMTPDVA+ +
Sbjct: 102 NSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

[Close]

BLAST of Lcy03g006930 vs. ExPASy TrEMBL
Match: A0A5D3BCH9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1970G00140 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 7.6e-13
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTE----------NIEAQQIP 65
           L + LALPIL+GYKLEG+LTGE  CP   +    S + T TE          +    +I 
Sbjct: 42  LWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIV 101

Query: 66  NPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           N  +E W+  D LLLGWLYNSMTPDVA+ +
Sbjct: 102 NSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

[Close]

BLAST of Lcy03g006930 vs. NCBI nr
Match: KAA0066132.1 (putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa] >TYK15175.1 putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. makuwa])

HSP 1 Score: 88.2 bits (217), Expect = 3.7e-14
Identity = 46/98 (46.94%), Postives = 59/98 (60.20%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDAT------------------STE 65
           L + LALPIL+GYKLEG+LTGEK CP K +T+T S  +                   ++ 
Sbjct: 43  LWKTLALPILKGYKLEGHLTGEKPCPEKFVTITSSAGSNGSVTEEGDDREQRAPKQIASS 102

Query: 66  NIEAQQIPNPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           ++ A  I NP +E W+  D LLLGWLYNSMTP VAV +
Sbjct: 103 SMSAPAIINPLFEQWIMTDLLLLGWLYNSMTPKVAVQL 140

[Close]

BLAST of Lcy03g006930 vs. NCBI nr
Match: TXG48382.1 (hypothetical protein EZV62_027676 [Acer yangbiense])

HSP 1 Score: 86.7 bits (213), Expect = 1.1e-13
Identity = 41/77 (53.25%), Postives = 51/77 (66.23%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTENIEAQQIPNPEYESWMAV 65
           L +NL LP++RG ++EGY+TG K CPP+ I     Q+A  T         NPEYE W+  
Sbjct: 186 LWKNLVLPVIRGNRMEGYITGAKKCPPEFIITDLEQEADETLE------ENPEYEDWIVH 245

Query: 66  DQLLLGWLYNSMTPDVA 83
           DQ+LLGWLYNSM PDVA
Sbjct: 246 DQILLGWLYNSMEPDVA 256

[Close]

BLAST of Lcy03g006930 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 85.9 bits (211), Expect = 1.8e-13
Identity = 42/81 (51.85%), Postives = 55/81 (67.90%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQS-QDATSTENIEAQQIPNPEYESWMA 65
           L QNLALPILR YKL  YLTG+K CPP  +  T +  +   + + ++    NP YE+W+ 
Sbjct: 46  LWQNLALPILRSYKLFDYLTGDKPCPPTHLVPTDTPTNIEGSTSSQSSPTLNPTYEAWIV 105

Query: 66  VDQLLLGWLYNSMTPDVAVHM 86
           VD+LLLGWLYNSM  DVA+ +
Sbjct: 106 VDKLLLGWLYNSMAADVAMQV 126

[Close]

BLAST of Lcy03g006930 vs. NCBI nr
Match: KAA0026100.1 (uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTE----------NIEAQQIP 65
           L + LALPIL+GYKLEG+LTGE  CP   +    S + T TE          +    +I 
Sbjct: 42  LWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIV 101

Query: 66  NPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           N  +E W+  D LLLGWLYNSMTPDVA+ +
Sbjct: 102 NSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

[Close]

BLAST of Lcy03g006930 vs. NCBI nr
Match: TYJ96311.1 (uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa])

HSP 1 Score: 82.8 bits (203), Expect = 1.6e-12
Identity = 43/90 (47.78%), Postives = 54/90 (60.00%), Query Frame = 0


Query: 6   LEQNLALPILRGYKLEGYLTGEKACPPKSITLTQSQDATSTE----------NIEAQQIP 65
           L + LALPIL+GYKLEG+LTGE  CP   +    S + T TE          +    +I 
Sbjct: 42  LWKTLALPILKGYKLEGHLTGETPCPSHFVLSASSSNTTVTEEGADATIGASSSITPRIV 101

Query: 66  NPEYESWMAVDQLLLGWLYNSMTPDVAVHM 86
           N  +E W+  D LLLGWLYNSMTPDVA+ +
Sbjct: 102 NSLFEQWVTTDLLLLGWLYNSMTPDVAIQL 131

The following BLAST results are available for this feature:

BLAST of Lcy03g006930 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g006930 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VCS1	1.8e-14	46.94	Putative leucine-rich repeat receptor-like protein kinase OS=Cucumis melo var. m...	[more]
A0A5C7GVK1	5.2e-14	53.25	Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_027676 PE=4 SV=1	[more]
A0A6J1DCW4	9.0e-14	51.85	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5A7SIT7	7.6e-13	47.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3BCH9	7.6e-13	47.78	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy03g006930 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0066132.1	3.7e-14	46.94	putative leucine-rich repeat receptor-like protein kinase [Cucumis melo var. mak...	[more]
TXG48382.1	1.1e-13	53.25	hypothetical protein EZV62_027676 [Acer yangbiense]	[more]
XP_022151683.1	1.8e-13	51.85	uncharacterized protein LOC111019598 [Momordica charantia]	[more]
KAA0026100.1	1.6e-12	47.78	uncharacterized protein E6C27_scaffold19G00360 [Cucumis melo var. makuwa]	[more]
TYJ96311.1	1.6e-12	47.78	uncharacterized protein E5676_scaffold1970G00140 [Cucumis melo var. makuwa]	[more]

BLAST of Lcy03g006930 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g006930.1	Lcy03g006930.1	mRNA