Lcy03g006770 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g006770
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 35917564 .. 35920826 (-)
RNA-Seq ExpressionLcy03g006770
SyntenyLcy03g006770
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTGCGAAAGTGGCTTCGGCGAGATTCTTCTCAAGATTCGTGGGTTCAATACGTGAGGAAAGTGTCTTCAAGCTCCTCCTCCTCCGAAACTGTTGTCGCCGCGCGTATGTGTTGTCCGATCGTCGTGGGTCTTCTGCTATCGGCCAGATCTGGAAGTTTTAGAGTTGTGGGTTTTATTTTTGTTCCAGAGATGTGGGTCTTCTGCCATCGGCCGGATCTAGAAGTTCCAGAGCTGTGGGTTTTATTTTCGAGTTGCAACAGCACAGACGTCGTGGGTCTTCTCTCTTCTGTTTTTGGAAAAGGAAAATGAAGAGAGGAAAAGAAAAGAAGAAAGGAAGGAGAAAAAAAAAAAAAAGTCGCCGGCGATCGGAGTTGCAGCAGCAGTACAGGTGGTGATGTAGAATGAAGATGAAGAAGAAGGTGAAGAGGAAGAAAGAGGAGGAGGAAGAAGGAGAAGAAATAATAATATTTTTATATTATTTTAATATATTTCTATTTTTCAAAATTTTTAGAATAATTTTTCTAATAAAAAATAGTGTCATATCAGCAATCATAGAAGTGTTTTTTTTTTTTTTTTTTTATAATATGTGGGGAGGAGGATTCGGACCACAGACCTTATGGTTATAAGTACAATTTTATGCCAGTTGAGCTCAGCTCTTGTTGGCTGGTAGTAGAAGTGTTTTAACTTTAAAGAAATTAAAGGTTTCATCTTCCTTACACATTTTGTAATTGCTTTTTAATTCTTTTCTAATTAGTATTATTGTTTTTCATGCTTTTAAATTTGTTAATTTAAAATTCTCCAATGTTAATTTTGTTCAAAACTATTTTTTTAACGTTTATTCAAATATAACATAGTATTTTAGTTAATATTTTTTCTTTCTATTCTAAAAACAATTATAACTATTTTAAAGTTTTCAAAAAAAAAAAATTATAACTAAAACAAAATAAATATATATTGTTGTTTTATATTTTATATTTTTTAAGCGTATTAGTTTTATCAAATTAAATATGTTATTTGTAATATGAAGGTCAATATATACACCATTTGACATCCATTTCATGTGTAAATATATATCTATTTTCTTTGTTTTACTCATCTCATTCTAACCGTGTTTTAGAGTTGTAAAATATGTTCCATAGGATAGAACATGATAGTTTTTTTTTATATATCAAGGTGGCAAAACAACATGAGAAGAATTATAATTTAAAGAAATTGTGTGTGATTAAAAGAGTTTCATCTTTCTCTCTTCACTACTATTGTTTTAGTTCATGTTATTGTTATCCATATTTATTCTTATTTAAAGTTGTTTACTTTTATATTTATTTCTTAATTTTATTTAAAAAAATTTATTGATTTATTCATATATCTTGCTTTTATAATATTTATTTTTTAATTTCATAAAACAATCACATTATTATTCAATTTTTTTAAAAAAAATCATTTTAATCTAATAATAGAAAAAATAGAATATCATGTGCAACGCACATATTAAAAAACTAGTAGATATTAAGCATATACAAACTTTAAATACAAAAAGATACTAAATTATCACAATTTTGAAAATACAATATTAAATCGAGACTTTTAATACAACAATCAAATGTATTTTTTTTCTCTCGTCATGAAGGTTTTGCTTCTTTCATGAGGATTCGGGTTTTGTTAGGGTTTTTAGCAGGGTCTGCCGTGAGACATTTAGGTTTCCAATCAGGGTTCCAGGTGTAGGGTCGGTTGAAGCGGGTGTCTCTCGAGGGTCTGTGAGTTTAAGTGCGTAGTCATTCTGGTTGGTGCAGCGGTCTGAGGTTTTCTCTGACAAGGGGTCTGTGGGTTGTGCGGTGACGCTAGTCTGGGCTCTGAGGAAGCTTCAAGTCATGGTTTCTGTTTTGGTGCCACGGGCGGAGGGTAGTTTCTAGTATCTTATGTTTCCGCGAGTCTGTAGGATCGGAGAGGTTGGGGTGAGAGGGCAAGGGACGAAGTTAGCAGCGAGTCATGGAGGATTTGGTTCAAAAGTGGAGGGCCCTGTCATTGACGGAAGACGAAGCGGAAGTAATCAAGTCTAATGCAATGCCGGAAATCCTATCTGCTGAATCGATTAGTTTGTGTCTGGTGGGAAAGGTCTTGACGACCAAAAGGATTAATCCTGATGCTTTTCCTTCTGTTATGAAGTCAGTATGGCGGGTGTAGTGCGACACGTATAGAATCAGCAGGGGATAATGTGTTTGCGATCCAGTTTAAGTCCTAAGGCGAGAAGCTACGTGTCATGGCAACTGGGCATAGTCCTTTGATAGATCTCTGCTGGTTCTGAGGGAGGCGAGTGAAGTGTCTTCTGTGGTCTCTGTAGAGTTTAAGGAATGTGCTTTTTGGGTGCAAATCCATAATGTGCCCATGCGTAGTCAGACGAGGAAGATGGCTCTCTTTTTGGGAAAAAAGATAGGGAAGCTGGAGAGGTGAGCAGGGTTGGGGAAAGCGAATGGGTCGGTCCAATATTGAGACTTCGTGTCCGCTTGAACCTGGAACGTCCTTTGCGGTAGGGTTTCAAACTCCAAACCAGTGATGGAGAGGAGGTTTGGTGCCCGGTTCTTCATGAAAGGGTTCCAGATTTTTGCTATAGTTGTGGGCAGCTGGGCCATTCGAGGAAGGAGTGTGTGCACGATGTGGGAGAGGGGGTGCAGGTGGGTCAGGAGCAATATGGCGAGTGGATGCGAACAGAGACGGTGTTGGGGGATGTGGGGAGGCAGGGCCTGAACTCGAATGAGAAGATGGAGGGCCAGAGTGAGGGGGTGTGAGGTCAATCTAAGTGAGGGAGTAGTAGAGCCTCTACAAGAGGGTGCAGGGGGGCGGGAGCCAGGGAGAGGGTTCGATAAGGGGGGAGGTGGTGGTGGATGTGGGAGGGTCAGAGCCACAAACCAGTGTGAAGGGGAAGGAGAAGGTAGGGGTTGATGTTCCCGATACAACTGTTGAGGGGACTGGATCGATAGAAGTGGATGGGGTAGGGTCAGGCCGGACGCAGAGTGGGAAAGGGTGGAAGAGGAGAGCCCAGAATATGTTAGTAGATGTGACGAATAAGGGAGGTTCGCCTGGTAAGGAAGTGTCCAAGCGAAAGTCACCTACAGAGGCAATTGGGTCTCAGGGGGCAAAGAAAGCTAAAATTGAATGTCTACCTATTTCAGGTATAGTTGATGGGAATGTTTCCACTTCTGACTTGATGATAACTGATAGCAGGGCGGTGGTTGGGGATTACCAGCCCCGCCAGTCGTCATGA

mRNA sequence

ATGACTGCGAAAGTGGCTTCGGCGAGATTCTTCTCAAGATTCGTGGGTTCAATACGTGAGGAAAGTGTCTTCAAGCTCCTCCTCCTCCGAAACTGTTGTCGCCGCGCAGATGTGGGTCTTCTGCCATCGGCCGGATCTAGAAGTTCCAGAGCTCGGTCTGAGGTTTTCTCTGACAAGGGGTCTGTGGGTTGTGCGGTGACGCTAGTCTGGGCTCTGAGGAAGCTTCAAGTCATGGTTTCTGTTTTGGTGCCACGGGCGGAGGACGAGGAAGATGGCTCTCTTTTTGGGAAAAAAGATAGGGAAGCTGGAGAGGGTTTCAAACTCCAAACCAGTGATGGAGAGGAGGTTTGGTGCCCGGTTCTTCATGAAAGGGTTCCAGATTTTTGCTATAGTTGTGGGCAGCTGGGCCATTCGAGGAAGGAGTGTGTGCACGATGTGGGAGAGGGGGTGCAGGGGGGCGGGAGCCAGGGAGAGGGTTCGATAAGGGGGGAGGTGGTGGTGGATGTGGGAGGGTCAGAGCCACAAACCAGTGTGAAGGGGAAGGAGAAGGTAGGGGTTGATGTTCCCGATACAACTGTTGAGGGGACTGGATCGATAGAAGTGGATGGGGTAGGGTCAGGCCGGACGCAGAGTGGGAAAGGGTGGAAGAGGAGAGCCCAGAATATGTTAGTAGATGTGACGAATAAGGGAGGTTCGCCTGGTAAGGAAGTGTCCAAGCGAAAGTCACCTACAGAGGCAATTGGGTCTCAGGGGGCAAAGAAAGCTAAAATTGAATGTCTACCTATTTCAGGTATAGTTGATGGGAATGTTTCCACTTCTGACTTGATGATAACTGATAGCAGGGCGGTGGTTGGGGATTACCAGCCCCGCCAGTCGTCATGA

Coding sequence (CDS)

ATGACTGCGAAAGTGGCTTCGGCGAGATTCTTCTCAAGATTCGTGGGTTCAATACGTGAGGAAAGTGTCTTCAAGCTCCTCCTCCTCCGAAACTGTTGTCGCCGCGCAGATGTGGGTCTTCTGCCATCGGCCGGATCTAGAAGTTCCAGAGCTCGGTCTGAGGTTTTCTCTGACAAGGGGTCTGTGGGTTGTGCGGTGACGCTAGTCTGGGCTCTGAGGAAGCTTCAAGTCATGGTTTCTGTTTTGGTGCCACGGGCGGAGGACGAGGAAGATGGCTCTCTTTTTGGGAAAAAAGATAGGGAAGCTGGAGAGGGTTTCAAACTCCAAACCAGTGATGGAGAGGAGGTTTGGTGCCCGGTTCTTCATGAAAGGGTTCCAGATTTTTGCTATAGTTGTGGGCAGCTGGGCCATTCGAGGAAGGAGTGTGTGCACGATGTGGGAGAGGGGGTGCAGGGGGGCGGGAGCCAGGGAGAGGGTTCGATAAGGGGGGAGGTGGTGGTGGATGTGGGAGGGTCAGAGCCACAAACCAGTGTGAAGGGGAAGGAGAAGGTAGGGGTTGATGTTCCCGATACAACTGTTGAGGGGACTGGATCGATAGAAGTGGATGGGGTAGGGTCAGGCCGGACGCAGAGTGGGAAAGGGTGGAAGAGGAGAGCCCAGAATATGTTAGTAGATGTGACGAATAAGGGAGGTTCGCCTGGTAAGGAAGTGTCCAAGCGAAAGTCACCTACAGAGGCAATTGGGTCTCAGGGGGCAAAGAAAGCTAAAATTGAATGTCTACCTATTTCAGGTATAGTTGATGGGAATGTTTCCACTTCTGACTTGATGATAACTGATAGCAGGGCGGTGGTTGGGGATTACCAGCCCCGCCAGTCGTCATGA

Protein sequence

MTAKVASARFFSRFVGSIREESVFKLLLLRNCCRRADVGLLPSAGSRSSRARSEVFSDKGSVGCAVTLVWALRKLQVMVSVLVPRAEDEEDGSLFGKKDREAGEGFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHDVGEGVQGGGSQGEGSIRGEVVVDVGGSEPQTSVKGKEKVGVDVPDTTVEGTGSIEVDGVGSGRTQSGKGWKRRAQNMLVDVTNKGGSPGKEVSKRKSPTEAIGSQGAKKAKIECLPISGIVDGNVSTSDLMITDSRAVVGDYQPRQSS
Homology
[Close]
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 6.7e-08
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKEC 143
           G KL+ SDG+++WCP+ +E++PDFCY CG++GHS +EC
Sbjct: 183 GIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGREC 220

[Close]
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match: A0A6J1DVS4 (uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023555 PE=4 SV=1)

HSP 1 Score: 64.3 bits (155), Expect = 9.6e-07
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKE 142
           G K++TSDG+++WCP+ +ER+PDFCY CG +GHS +E
Sbjct: 183 GLKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

[Close]
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match: A0A6J1DAR4 (uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018954 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 1.3e-06
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 107 KLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHDVGEGVQGGGSQGEGSIRGEVV 166
           K+QT+DG+++WCP+ +E++PDFCY CG++GHS +E      EG   G +Q    +R  ++
Sbjct: 2   KIQTTDGKDLWCPLRYEKLPDFCYECGRMGHSGREHEQRPPEGTFNGSAQYGSWLRASLL 61

[Close]
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match: A0A2U1QAG5 (CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA054370 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 5.3e-05
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHDVGEGVQGGGSQ 157
           GF +  SDG+E W  + +ER+ DFCY CG LGH R+ C +DV E   G  SQ
Sbjct: 156 GFFIPRSDGKESWITLKYERLSDFCYRCGCLGHCRESCTNDVIERFAGKWSQ 207

[Close]
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match: A0A314YD53 (CCHC-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_00485 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.0e-04
Identity = 25/52 (48.08%), Postives = 32/52 (61.54%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHD-VGEGVQGGGS 156
           GF L  SDG E W  + +ER+ DFCY+CG+LGH   EC  +   EG  G G+
Sbjct: 67  GFWLPRSDGSETWAELQYERLSDFCYNCGRLGHCNTECPQEKAEEGAAGYGT 118

[Close]
BLAST of Lcy03g006770 vs. NCBI nr
Match: XP_022149484.1 (uncharacterized protein LOC111017902 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 1.4e-07
Identity = 22/38 (57.89%), Postives = 33/38 (86.84%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKEC 143
           G KL+ SDG+++WCP+ +E++PDFCY CG++GHS +EC
Sbjct: 183 GIKLKNSDGKDIWCPLRYEKLPDFCYECGKIGHSGREC 220

[Close]
BLAST of Lcy03g006770 vs. NCBI nr
Match: XP_022156711.1 (uncharacterized protein LOC111023555 [Momordica charantia])

HSP 1 Score: 64.3 bits (155), Expect = 2.0e-06
Identity = 22/37 (59.46%), Postives = 32/37 (86.49%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKE 142
           G K++TSDG+++WCP+ +ER+PDFCY CG +GHS +E
Sbjct: 183 GLKVKTSDGKDIWCPLRYERLPDFCYGCGCVGHSIRE 219

[Close]
BLAST of Lcy03g006770 vs. NCBI nr
Match: XP_022150918.1 (uncharacterized protein LOC111018954 [Momordica charantia])

HSP 1 Score: 63.9 bits (154), Expect = 2.6e-06
Identity = 25/60 (41.67%), Postives = 41/60 (68.33%), Query Frame = 0 

Query: 107 KLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHDVGEGVQGGGSQGEGSIRGEVV 166
           K+QT+DG+++WCP+ +E++PDFCY CG++GHS +E      EG   G +Q    +R  ++
Sbjct: 2   KIQTTDGKDLWCPLRYEKLPDFCYECGRMGHSGREHEQRPPEGTFNGSAQYGSWLRASLL 61

[Close]
BLAST of Lcy03g006770 vs. NCBI nr
Match: PWA95005.1 (hypothetical protein CTI12_AA054370 [Artemisia annua])

HSP 1 Score: 58.5 bits (140), Expect = 1.1e-04
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKECVHDVGEGVQGGGSQ 157
           GF +  SDG+E W  + +ER+ DFCY CG LGH R+ C +DV E   G  SQ
Sbjct: 156 GFFIPRSDGKESWITLKYERLSDFCYRCGCLGHCRESCTNDVIERFAGKWSQ 207

[Close]
BLAST of Lcy03g006770 vs. NCBI nr
Match: OMO99383.1 (hypothetical protein COLO4_13287 [Corchorus olitorius])

HSP 1 Score: 57.0 bits (136), Expect = 3.2e-04
Identity = 19/38 (50.00%), Postives = 27/38 (71.05%), Query Frame = 0 

Query: 105 GFKLQTSDGEEVWCPVLHERVPDFCYSCGQLGHSRKEC 143
           GF +   D E +WC + +ER+ DFCYSCG++GH+ K C
Sbjct: 169 GFWVPKHDNERMWCDIKYERLADFCYSCGRMGHTEKNC 206

The following BLAST results are available for this feature:
BLAST of Lcy03g006770 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g006770 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A6J1D7656.7e-0857.89uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A6J1DVS49.6e-0759.46uncharacterized protein LOC111023555 OS=Momordica charantia OX=3673 GN=LOC111023... [more]
A0A6J1DAR41.3e-0641.67uncharacterized protein LOC111018954 OS=Momordica charantia OX=3673 GN=LOC111018... [more]
A0A2U1QAG55.3e-0550.00CCHC-type domain-containing protein OS=Artemisia annua OX=35608 GN=CTI12_AA05437... [more]
A0A314YD532.0e-0448.08CCHC-type domain-containing protein OS=Prunus yedoensis var. nudiflora OX=209455... [more]
BLAST of Lcy03g006770 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022149484.11.4e-0757.89uncharacterized protein LOC111017902 [Momordica charantia][more]
XP_022156711.12.0e-0659.46uncharacterized protein LOC111023555 [Momordica charantia][more]
XP_022150918.12.6e-0641.67uncharacterized protein LOC111018954 [Momordica charantia][more]
PWA95005.11.1e-0450.00hypothetical protein CTI12_AA054370 [Artemisia annua][more]
OMO99383.13.2e-0450.00hypothetical protein COLO4_13287 [Corchorus olitorius][more]
BLAST of Lcy03g006770 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 107..142
e-value: 9.6E-10
score: 38.0
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 229..253
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 129..142
score: 9.850513

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g006770.1Lcy03g006770.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding