Lcy03g006380 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g006380
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionLINE-1 retrotransposable element ORF2 protein
LocationChr03: 34113849 .. 34115494 (-)
RNA-Seq ExpressionLcy03g006380
SyntenyLcy03g006380
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTATCCTTTCTCTCTCCAAAAAACAAAACGGTCTTGTACGACCCGTTATATGCCCCAGCCAAGCCGTTAACTCCAAGGGCCCATCACAAAAGCCCAACAGAGTAGAGAGAGGCATCCCAAAGACTTTCTACAGGCCCAAACCTTCGAAAGGCATTGTCATCAACAAGCCGACGACTTTCAAACCCAAACCGACTCAATCGACCTTAACCTATCAAGCTGACGAAGGAAAATCAATAGTTCAAAATCAGATGGGTCATGAGGAATTCACATTGACTGTAGACCTGGGATATCTATCCCCCATTTCAGATACGACCATTTCAAGCCCTGAAAGAACGCCTTCTCCGGTAGAAACTTTCGTCTAAGAGCCTACATCAGACATTGTCAAGATAGTCTCCGCGGTCTTATGTAGGAAAACAGTGAAGCTCGAGCAAAGGATCAAGTATTGGGACAAACCTCCTCAGATCATAGCAGAGAGAAATCAGCTCAGATGGAGAAGAGTGGTGAAGATCAATCCTTCAAAAAGCAACTAAATGAGTGGCTGATAGAGAACAATTTCTGTCTTGTTCCGACTAAATGTATCTCTAAAAATATATCCGCTGTAAACAGCCAAGAGGCTGTGGGGTCAGCTAGTGGATCATGAAAGTACTCTCTTGGAATGTTAGAGGGTTAGGCTCTCCCTAAAAAAGAGCCCTAATAAAAGACCTAATTATCTACCTCTGTCCAGATATTGTAATTTTATCAGAAACAAAAATTGTCTCCATCTCAAAAAATTTTGTGAAATCAATATGGAGTTCCATTAGCATTAATTGGGCGTCCCTGGATTCTTCTGGTAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA

mRNA sequence

ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA

Coding sequence (CDS)

ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA

Protein sequence

MITKAICRQRGRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDTMERQGHLEESHH
Homology
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match: A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)

HSP 1 Score: 272.3 bits (695), Expect = 2.1e-69
Identity = 125/252 (49.60%), Postives = 175/252 (69.44%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ S +D ++G +SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   +SSE+S+++P+K SM  FN FI+ +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
           + ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI LE+  ++WGPSPF+F N  LK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E  F KN+ +WW   +Q GHPG+SF+++LKQL++ ++D ++ N       KK    EID+
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+  E
Sbjct: 241 IDRLEAEGNFSE 252

BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match: A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)

HSP 1 Score: 271.2 bits (692), Expect = 4.8e-69
Identity = 119/258 (46.12%), Postives = 174/258 (67.44%), Query Frame = 0

Query: 11  GRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTEL 70
           G SGGI++LWD L  SA + + G++S+S++F LAD F WWL+ +Y P K+K R+ FW EL
Sbjct: 65  GASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQEL 124

Query: 71  YDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTW 130
           +DL GLC   WLLG DFN + WS E+SS +P +  M+KFN FI+F  L+DP + NG +TW
Sbjct: 125 FDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTW 184

Query: 131 SNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFD 190
           SNLR  +++SR++RFLYS  W+ KF+ HH +RL R  SDH+PI+LE PN  WG  PFR +
Sbjct: 185 SNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLE 244

Query: 191 NYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLS 250
           N  L++K F ++I+  W+    DG+ GY+ I++L  LA  +K  +++    I   K  + 
Sbjct: 245 NLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIM 304

Query: 251 DEIDSIDTMERQGHLEES 269
           ++I SID  E  G ++++
Sbjct: 305 EKILSIDKQEETGFIDKT 322

BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match: A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)

HSP 1 Score: 266.9 bits (681), Expect = 9.0e-68
Identity = 123/251 (49.00%), Postives = 163/251 (64.94%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCN 78
           +W+    S     +GN+S+SI     +G  WWLS IYGPAKRK+R  FW EL +L  +C 
Sbjct: 1   MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60

Query: 79  DCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVI 138
             W+LGGDFN   W  E+S+++PA  SM +FN+FI+  NL+DPPL N  FTWSNLR +  
Sbjct: 61  PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKFTWSNLRAQAT 120

Query: 139 MSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKR 198
           +SRLDRFL+S+ W   F  H S+ L+R TSDHFPI+LE+ +++WGPSPFRF N  LK+  
Sbjct: 121 LSRLDRFLFSTQWENIFPGHTSKVLTRTTSDHFPIVLESSSISWGPSPFRFTNAYLKDPD 180

Query: 199 FVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDT 258
           + +NI+ WW  + Q G  GYSF+ RLKQLA K+K W R      +  KK    EID I+ 
Sbjct: 181 YKRNIEFWWGNTSQPGFAGYSFMHRLKQLAMKIKAWGREKKGKDEASKKAWIKEIDLINK 240

Query: 259 MERQGHLEESH 270
           +E +G   E H
Sbjct: 241 LEAEGTSTEIH 251

BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match: A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)

HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ + +D ++GN+SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   + SE+S+++P+K SM  FN FI  +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
             ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI+LE+  ++WGPSPF+  N  LK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E  F  NI  WW   +Q+GHPG+SF+R+LKQL++ +++ +R N       K     EIDS
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252

BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match: A0A5A7TAQ1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00050 PE=4 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ + +D ++G +SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   +SSE+S+++P+K SM  FN FI+ +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
           + ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI LE+  ++WGPSPF+  N  LK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E    KN+  WW   +Q+GHPG+SF+R+LKQL++ +++ +R N       K     EID+
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252

BLAST of Lcy03g006380 vs. NCBI nr
Match: TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 272.3 bits (695), Expect = 4.4e-69
Identity = 125/252 (49.60%), Postives = 175/252 (69.44%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ S +D ++G +SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   +SSE+S+++P+K SM  FN FI+ +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
           + ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI LE+  ++WGPSPF+F N  LK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E  F KN+ +WW   +Q GHPG+SF+++LKQL++ ++D ++ N       KK    EID+
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+  E
Sbjct: 241 IDRLEAEGNFSE 252

BLAST of Lcy03g006380 vs. NCBI nr
Match: XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])

HSP 1 Score: 271.2 bits (692), Expect = 9.9e-69
Identity = 119/258 (46.12%), Postives = 174/258 (67.44%), Query Frame = 0

Query: 11  GRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTEL 70
           G SGGI++LWD L  SA + + G++S+S++F LAD F WWL+ +Y P K+K R+ FW EL
Sbjct: 65  GASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQEL 124

Query: 71  YDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTW 130
           +DL GLC   WLLG DFN + WS E+SS +P +  M+KFN FI+F  L+DP + NG +TW
Sbjct: 125 FDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTW 184

Query: 131 SNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFD 190
           SNLR  +++SR++RFLYS  W+ KF+ HH +RL R  SDH+PI+LE PN  WG  PFR +
Sbjct: 185 SNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLE 244

Query: 191 NYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLS 250
           N  L++K F ++I+  W+    DG+ GY+ I++L  LA  +K  +++    I   K  + 
Sbjct: 245 NLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIM 304

Query: 251 DEIDSIDTMERQGHLEES 269
           ++I SID  E  G ++++
Sbjct: 305 EKILSIDKQEETGFIDKT 322

BLAST of Lcy03g006380 vs. NCBI nr
Match: TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-67
Identity = 123/251 (49.00%), Postives = 163/251 (64.94%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCN 78
           +W+    S     +GN+S+SI     +G  WWLS IYGPAKRK+R  FW EL +L  +C 
Sbjct: 1   MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60

Query: 79  DCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVI 138
             W+LGGDFN   W  E+S+++PA  SM +FN+FI+  NL+DPPL N  FTWSNLR +  
Sbjct: 61  PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKFTWSNLRAQAT 120

Query: 139 MSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKR 198
           +SRLDRFL+S+ W   F  H S+ L+R TSDHFPI+LE+ +++WGPSPFRF N  LK+  
Sbjct: 121 LSRLDRFLFSTQWENIFPGHTSKVLTRTTSDHFPIVLESSSISWGPSPFRFTNAYLKDPD 180

Query: 199 FVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDT 258
           + +NI+ WW  + Q G  GYSF+ RLKQLA K+K W R      +  KK    EID I+ 
Sbjct: 181 YKRNIEFWWGNTSQPGFAGYSFMHRLKQLAMKIKAWGREKKGKDEASKKAWIKEIDLINK 240

Query: 259 MERQGHLEESH 270
           +E +G   E H
Sbjct: 241 LEAEGTSTEIH 251

BLAST of Lcy03g006380 vs. NCBI nr
Match: TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 266.2 bits (679), Expect = 3.2e-67
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ + +D ++GN+SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   + SE+S+++P+K SM  FN FI  +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
             ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI+LE+  ++WGPSPF+  N  LK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E  F  NI  WW   +Q+GHPG+SF+R+LKQL++ +++ +R N       K     EIDS
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252

BLAST of Lcy03g006380 vs. NCBI nr
Match: KAA0040038.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])

HSP 1 Score: 265.8 bits (678), Expect = 4.1e-67
Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 0

Query: 19  LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
           +WD L+ + +D ++G +SLSIN +  DG     WWLS IYGP+  ++R+ FW EL DL  
Sbjct: 1   MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60

Query: 79  LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
            C+  WLL GDFN   +SSE+S+++P+K SM  FN FI+ +NL+DPPL N  FTWSNLR 
Sbjct: 61  KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120

Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
           + ++SR+DRFLY++ W   F  H+S+ LSRVTSDHFPI LE+  ++WGPSPF+  N  LK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180

Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
           E    KN+  WW   +Q+GHPG+SF+R+LKQL++ +++ +R N       K     EID+
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240

Query: 259 IDTMERQGHLEE 268
           ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252

BLAST of Lcy03g006380 vs. TAIR 10
Match: AT1G43760.1 (DNAse I-like superfamily protein )

HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06
Identity = 46/182 (25.27%), Postives = 78/182 (42.86%), Query Frame = 0

Query: 82  LLGGDFNTFCWSSESSS---RSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLR-ERV 141
           +L GDF+    +S+  S    S   R + +F + +  ++LVD P     +TWSN + +  
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNP 281

Query: 142 IMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNL-NWGPSPFRFDNYLLKE 201
           I+ +LDR + +  W   F    +       SDH P I+   NL       FR+ ++L   
Sbjct: 282 IIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTH 341

Query: 202 KRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSI 259
             F+ ++ + W      G   +S    LK      K   R     I+ + K   D ++SI
Sbjct: 342 PTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESI 401

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DLM22.1e-6949.60LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A6J1CVN24.8e-6946.12uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... [more]
A0A5D3BJP39.0e-6849.00LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3C4J11.5e-6749.60LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5A7TAQ12.0e-6748.81LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... [more]
Match NameE-valueIdentityDescription
TYK24536.14.4e-6949.60LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
XP_022145142.19.9e-6946.12uncharacterized protein LOC111014657 [Momordica charantia][more]
TYJ99326.11.9e-6749.00LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
TYK06777.13.2e-6749.60LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
KAA0040038.14.1e-6748.81LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
AT1G43760.11.5e-0625.27DNAse I-like superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036691Endonuclease/exonuclease/phosphatase superfamilyGENE3D3.60.10.10Endonuclease/exonuclease/phosphatasecoord: 3..176
e-value: 2.6E-22
score: 81.8
IPR036691Endonuclease/exonuclease/phosphatase superfamilySUPERFAMILY56219DNase I-likecoord: 10..176
NoneNo IPR availablePANTHERPTHR33710:SF32SUBFAMILY NOT NAMEDcoord: 41..256
NoneNo IPR availablePANTHERPTHR33710BNAC02G09200D PROTEINcoord: 41..256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g006380.1Lcy03g006380.1mRNA