Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTATCCTTTCTCTCTCCAAAAAACAAAACGGTCTTGTACGACCCGTTATATGCCCCAGCCAAGCCGTTAACTCCAAGGGCCCATCACAAAAGCCCAACAGAGTAGAGAGAGGCATCCCAAAGACTTTCTACAGGCCCAAACCTTCGAAAGGCATTGTCATCAACAAGCCGACGACTTTCAAACCCAAACCGACTCAATCGACCTTAACCTATCAAGCTGACGAAGGAAAATCAATAGTTCAAAATCAGATGGGTCATGAGGAATTCACATTGACTGTAGACCTGGGATATCTATCCCCCATTTCAGATACGACCATTTCAAGCCCTGAAAGAACGCCTTCTCCGGTAGAAACTTTCGTCTAAGAGCCTACATCAGACATTGTCAAGATAGTCTCCGCGGTCTTATGTAGGAAAACAGTGAAGCTCGAGCAAAGGATCAAGTATTGGGACAAACCTCCTCAGATCATAGCAGAGAGAAATCAGCTCAGATGGAGAAGAGTGGTGAAGATCAATCCTTCAAAAAGCAACTAAATGAGTGGCTGATAGAGAACAATTTCTGTCTTGTTCCGACTAAATGTATCTCTAAAAATATATCCGCTGTAAACAGCCAAGAGGCTGTGGGGTCAGCTAGTGGATCATGAAAGTACTCTCTTGGAATGTTAGAGGGTTAGGCTCTCCCTAAAAAAGAGCCCTAATAAAAGACCTAATTATCTACCTCTGTCCAGATATTGTAATTTTATCAGAAACAAAAATTGTCTCCATCTCAAAAAATTTTGTGAAATCAATATGGAGTTCCATTAGCATTAATTGGGCGTCCCTGGATTCTTCTGGTAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA
mRNA sequence
ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA
Coding sequence (CDS)
ATGATAACAAAGGCGATCTGTCGACAAAGAGGAAGGTCAGGGGGCATTCTTATTTTGTGGGATGCTTTAAAGCTTTCAGCTTCCGACACCGTCCAGGGCAATTACTCTCTCTCAATTAATTTCTCCTTGGCCGATGGTTTTCGTTGGTGGCTCTCGGTCATTTATGGCCCTGCTAAGAGGAAGGATCGGCGTCAATTTTGGACAGAGCTTTATGACCTTGGGGGTTTGTGCAATGATTGCTGGTTGTTGGGCGGTGACTTCAATACTTTTTGCTGGAGTTCTGAATCTTCCTCTCGCAGTCCTGCTAAAAGGAGCATGTCTAAATTCAATTCCTTCATTAACTTCACGAACCTCGTTGACCCACCCCTCATTAATGGAGGCTTCACGTGGTCTAATCTAAGGGAAAGAGTTATTATGTCAAGGTTGGACAGATTTCTTTACTCCTCTGCATGGGCCATGAAGTTCGCAGATCATCATTCCAGAAGGCTAAGTAGGGTTACTTCGGATCATTTTCCAATTATCCTTGAGAATCCGAATTTAAATTGGGGGCCGAGTCCTTTCCGCTTTGATAATTATTTGCTTAAAGAGAAGAGGTTTGTCAAAAATATTGACCTTTGGTGGGCTCTCTCTCAGCAGGACGGTCATCCGGGATACTCTTTCATTCGAAGACTTAAACAATTGGCATCAAAGGTCAAAGATTGGAAGAGGAGCAATATTGAGGCTATTAAAACAAGGAAAAAAACCTTATCAGATGAAATTGATTCTATCGACACTATGGAGAGACAAGGCCATTTGGAAGAAAGCCATCATTAA
Protein sequence
MITKAICRQRGRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDTMERQGHLEESHH
Homology
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match:
A0A5D3DLM2 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold266G00780 PE=4 SV=1)
HSP 1 Score: 272.3 bits (695), Expect = 2.1e-69
Identity = 125/252 (49.60%), Postives = 175/252 (69.44%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ S +D ++G +SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN +SSE+S+++P+K SM FN FI+ +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
+ ++SR+DRFLY++ W F H+S+ LSRVTSDHFPI LE+ ++WGPSPF+F N LK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E F KN+ +WW +Q GHPG+SF+++LKQL++ ++D ++ N KK EID+
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+ E
Sbjct: 241 IDRLEAEGNFSE 252
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match:
A0A6J1CVN2 (uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014657 PE=4 SV=1)
HSP 1 Score: 271.2 bits (692), Expect = 4.8e-69
Identity = 119/258 (46.12%), Postives = 174/258 (67.44%), Query Frame = 0
Query: 11 GRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTEL 70
G SGGI++LWD L SA + + G++S+S++F LAD F WWL+ +Y P K+K R+ FW EL
Sbjct: 65 GASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQEL 124
Query: 71 YDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTW 130
+DL GLC WLLG DFN + WS E+SS +P + M+KFN FI+F L+DP + NG +TW
Sbjct: 125 FDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTW 184
Query: 131 SNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFD 190
SNLR +++SR++RFLYS W+ KF+ HH +RL R SDH+PI+LE PN WG PFR +
Sbjct: 185 SNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLE 244
Query: 191 NYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLS 250
N L++K F ++I+ W+ DG+ GY+ I++L LA +K +++ I K +
Sbjct: 245 NLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIM 304
Query: 251 DEIDSIDTMERQGHLEES 269
++I SID E G ++++
Sbjct: 305 EKILSIDKQEETGFIDKT 322
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match:
A0A5D3BJP3 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G005410 PE=4 SV=1)
HSP 1 Score: 266.9 bits (681), Expect = 9.0e-68
Identity = 123/251 (49.00%), Postives = 163/251 (64.94%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCN 78
+W+ S +GN+S+SI +G WWLS IYGPAKRK+R FW EL +L +C
Sbjct: 1 MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60
Query: 79 DCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVI 138
W+LGGDFN W E+S+++PA SM +FN+FI+ NL+DPPL N FTWSNLR +
Sbjct: 61 PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKFTWSNLRAQAT 120
Query: 139 MSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKR 198
+SRLDRFL+S+ W F H S+ L+R TSDHFPI+LE+ +++WGPSPFRF N LK+
Sbjct: 121 LSRLDRFLFSTQWENIFPGHTSKVLTRTTSDHFPIVLESSSISWGPSPFRFTNAYLKDPD 180
Query: 199 FVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDT 258
+ +NI+ WW + Q G GYSF+ RLKQLA K+K W R + KK EID I+
Sbjct: 181 YKRNIEFWWGNTSQPGFAGYSFMHRLKQLAMKIKAWGREKKGKDEASKKAWIKEIDLINK 240
Query: 259 MERQGHLEESH 270
+E +G E H
Sbjct: 241 LEAEGTSTEIH 251
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match:
A0A5D3C4J1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold13G00790 PE=4 SV=1)
HSP 1 Score: 266.2 bits (679), Expect = 1.5e-67
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ + +D ++GN+SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN + SE+S+++P+K SM FN FI +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
++SR+DRFLY++ W F H+S+ LSRVTSDHFPI+LE+ ++WGPSPF+ N LK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E F NI WW +Q+GHPG+SF+R+LKQL++ +++ +R N K EIDS
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252
BLAST of Lcy03g006380 vs. ExPASy TrEMBL
Match:
A0A5A7TAQ1 (LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold366G00050 PE=4 SV=1)
HSP 1 Score: 265.8 bits (678), Expect = 2.0e-67
Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ + +D ++G +SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN +SSE+S+++P+K SM FN FI+ +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
+ ++SR+DRFLY++ W F H+S+ LSRVTSDHFPI LE+ ++WGPSPF+ N LK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E KN+ WW +Q+GHPG+SF+R+LKQL++ +++ +R N K EID+
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252
BLAST of Lcy03g006380 vs. NCBI nr
Match:
TYK24536.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 272.3 bits (695), Expect = 4.4e-69
Identity = 125/252 (49.60%), Postives = 175/252 (69.44%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ S +D ++G +SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFSVTDCIEGTFSLSININFPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN +SSE+S+++P+K SM FN FI+ +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNAVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
+ ++SR+DRFLY++ W F H+S+ LSRVTSDHFPI LE+ ++WGPSPF+F N LK
Sbjct: 121 QPVLSRIDRFLYTANWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKFINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E F KN+ +WW +Q GHPG+SF+++LKQL++ ++D ++ N KK EID+
Sbjct: 181 EPWFKKNVTIWWKNLRQGGHPGFSFMKKLKQLSAIIRDEQKKNKCYNDEEKKAWIKEIDN 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+ E
Sbjct: 241 IDRLEAEGNFSE 252
BLAST of Lcy03g006380 vs. NCBI nr
Match:
XP_022145142.1 (uncharacterized protein LOC111014657 [Momordica charantia])
HSP 1 Score: 271.2 bits (692), Expect = 9.9e-69
Identity = 119/258 (46.12%), Postives = 174/258 (67.44%), Query Frame = 0
Query: 11 GRSGGILILWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTEL 70
G SGGI++LWD L SA + + G++S+S++F LAD F WWL+ +Y P K+K R+ FW EL
Sbjct: 65 GASGGIILLWDQLSTSAVEVICGHFSISVHFKLADNFTWWLTGVYSPVKQKKRKLFWQEL 124
Query: 71 YDLGGLCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTW 130
+DL GLC WLLG DFN + WS E+SS +P + M+KFN FI+F L+DP + NG +TW
Sbjct: 125 FDLNGLCGPIWLLGEDFNIYRWSHETSSANPPQTGMNKFNHFIDFAGLIDPFMNNGQYTW 184
Query: 131 SNLRERVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFD 190
SNLR +++SR++RFLYS W+ KF+ HH +RL R SDH+PI+LE PN WG PFR +
Sbjct: 185 SNLRPHIVLSRINRFLYSKGWSDKFSHHHIKRLPRACSDHYPILLEPPNQQWGHCPFRLE 244
Query: 191 NYLLKEKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLS 250
N L++K F ++I+ W+ DG+ GY+ I++L LA +K +++ I K +
Sbjct: 245 NLWLQDKHFQQHIEAIWSSGSSDGYLGYALIKKLNTLAQDIKRLRKNFGPNIPREKAKIM 304
Query: 251 DEIDSIDTMERQGHLEES 269
++I SID E G ++++
Sbjct: 305 EKILSIDKQEETGFIDKT 322
BLAST of Lcy03g006380 vs. NCBI nr
Match:
TYJ99326.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.9 bits (681), Expect = 1.9e-67
Identity = 123/251 (49.00%), Postives = 163/251 (64.94%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADGFRWWLSVIYGPAKRKDRRQFWTELYDLGGLCN 78
+W+ S +GN+S+SI +G WWLS IYGPAKRK+R FW EL +L +C
Sbjct: 1 MWNDQNFSIQSVFKGNFSVSIQVGSNNGASWWLSAIYGPAKRKNRPLFWEELENLKSICF 60
Query: 79 DCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRERVI 138
W+LGGDFN W E+S+++PA SM +FN+FI+ NL+DPPL N FTWSNLR +
Sbjct: 61 PTWILGGDFNVIRWKEETSTKNPASLSMKRFNTFISNCNLIDPPLTNAKFTWSNLRAQAT 120
Query: 139 MSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLKEKR 198
+SRLDRFL+S+ W F H S+ L+R TSDHFPI+LE+ +++WGPSPFRF N LK+
Sbjct: 121 LSRLDRFLFSTQWENIFPGHTSKVLTRTTSDHFPIVLESSSISWGPSPFRFTNAYLKDPD 180
Query: 199 FVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSIDT 258
+ +NI+ WW + Q G GYSF+ RLKQLA K+K W R + KK EID I+
Sbjct: 181 YKRNIEFWWGNTSQPGFAGYSFMHRLKQLAMKIKAWGREKKGKDEASKKAWIKEIDLINK 240
Query: 259 MERQGHLEESH 270
+E +G E H
Sbjct: 241 LEAEGTSTEIH 251
BLAST of Lcy03g006380 vs. NCBI nr
Match:
TYK06777.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 266.2 bits (679), Expect = 3.2e-67
Identity = 125/252 (49.60%), Postives = 172/252 (68.25%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ + +D ++GN+SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFNVTDFIEGNFSLSININSPDGPSNSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN + SE+S+++P+K SM FN FI +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNVVRFPSETSAQNPSKHSMRCFNKFIADSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
++SR+DRFLY++ W F H+S+ LSRVTSDHFPI+LE+ ++WGPSPF+ N LK
Sbjct: 121 HPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIVLESSLISWGPSPFKLINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E F NI WW +Q+GHPG+SF+R+LKQL++ +++ +R N K EIDS
Sbjct: 181 EPWFKNNITNWWKNLRQEGHPGFSFMRKLKQLSTIIRNEQRKNKCYSDEDKNAWIKEIDS 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252
BLAST of Lcy03g006380 vs. NCBI nr
Match:
KAA0040038.1 (LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa])
HSP 1 Score: 265.8 bits (678), Expect = 4.1e-67
Identity = 123/252 (48.81%), Postives = 173/252 (68.65%), Query Frame = 0
Query: 19 LWDALKLSASDTVQGNYSLSINFSLADG---FRWWLSVIYGPAKRKDRRQFWTELYDLGG 78
+WD L+ + +D ++G +SLSIN + DG WWLS IYGP+ ++R+ FW EL DL
Sbjct: 1 MWDDLRFNVTDFIEGTFSLSININTPDGPSSSAWWLSAIYGPSGGRNRKSFWAELLDLKN 60
Query: 79 LCNDCWLLGGDFNTFCWSSESSSRSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLRE 138
C+ WLL GDFN +SSE+S+++P+K SM FN FI+ +NL+DPPL N FTWSNLR
Sbjct: 61 KCSPTWLLAGDFNVVRFSSETSTQNPSKHSMRCFNKFISDSNLIDPPLSNAKFTWSNLRV 120
Query: 139 RVIMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNLNWGPSPFRFDNYLLK 198
+ ++SR+DRFLY++ W F H+S+ LSRVTSDHFPI LE+ ++WGPSPF+ N LK
Sbjct: 121 QPVLSRIDRFLYTTNWENLFTAHYSKTLSRVTSDHFPIALESSMISWGPSPFKLINVHLK 180
Query: 199 EKRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDS 258
E KN+ WW +Q+GHPG+SF+R+LKQL++ +++ +R N K EID+
Sbjct: 181 ESWLKKNVTYWWKNLRQEGHPGFSFMRKLKQLSAIIRNEQRKNKCYSDEDKNAWIKEIDN 240
Query: 259 IDTMERQGHLEE 268
ID +E +G+L E
Sbjct: 241 IDRLEAEGNLSE 252
BLAST of Lcy03g006380 vs. TAIR 10
Match:
AT1G43760.1 (DNAse I-like superfamily protein )
HSP 1 Score: 51.2 bits (121), Expect = 1.5e-06
Identity = 46/182 (25.27%), Postives = 78/182 (42.86%), Query Frame = 0
Query: 82 LLGGDFNTFCWSSESSS---RSPAKRSMSKFNSFINFTNLVDPPLINGGFTWSNLR-ERV 141
+L GDF+ +S+ S S R + +F + + ++LVD P +TWSN + +
Sbjct: 222 ILVGDFDQIAATSDHYSVLQTSIPMRGLEEFQNCLRDSDLVDIPSRGVHYTWSNHQDDNP 281
Query: 142 IMSRLDRFLYSSAWAMKFADHHSRRLSRVTSDHFPIILENPNL-NWGPSPFRFDNYLLKE 201
I+ +LDR + + W F + SDH P I+ NL FR+ ++L
Sbjct: 282 IIRKLDRAIANGDWFSSFPSAIAVFELSGVSDHSPCIIILENLPKRSKKCFRYFSFLSTH 341
Query: 202 KRFVKNIDLWWALSQQDGHPGYSFIRRLKQLASKVKDWKRSNIEAIKTRKKTLSDEIDSI 259
F+ ++ + W G +S LK K R I+ + K D ++SI
Sbjct: 342 PTFLVSLTVAWEEQIPVGSHMFSLGEHLKAAKKCCKLLNRQGFGNIQHKTKEALDSLESI 401
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3DLM2 | 2.1e-69 | 49.60 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A6J1CVN2 | 4.8e-69 | 46.12 | uncharacterized protein LOC111014657 OS=Momordica charantia OX=3673 GN=LOC111014... | [more] |
A0A5D3BJP3 | 9.0e-68 | 49.00 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5D3C4J1 | 1.5e-67 | 49.60 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
A0A5A7TAQ1 | 2.0e-67 | 48.81 | LINE-1 retrotransposable element ORF2 protein OS=Cucumis melo var. makuwa OX=119... | [more] |
Match Name | E-value | Identity | Description | |
TYK24536.1 | 4.4e-69 | 49.60 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
XP_022145142.1 | 9.9e-69 | 46.12 | uncharacterized protein LOC111014657 [Momordica charantia] | [more] |
TYJ99326.1 | 1.9e-67 | 49.00 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
TYK06777.1 | 3.2e-67 | 49.60 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
KAA0040038.1 | 4.1e-67 | 48.81 | LINE-1 retrotransposable element ORF2 protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
AT1G43760.1 | 1.5e-06 | 25.27 | DNAse I-like superfamily protein | [more] |