Lcy03g006290 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g006290
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionReverse transcriptase domain-containing protein
LocationChr03: 33831442 .. 33831831 (-)
RNA-Seq ExpressionLcy03g006290
SyntenyLcy03g006290
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA

mRNA sequence

ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA

Coding sequence (CDS)

ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA

Protein sequence

MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWAKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPIMGGSPKSL
Homology
BLAST of Lcy03g006290 vs. ExPASy Swiss-Prot
Match: P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 35/107 (32.71%), Postives = 57/107 (53.27%), Query Frame = 0

Query: 3   ISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWAK 62
           +S  GR TL  A LSSMP++ +S    P  +   L +L   F W  ++     H + W+K
Sbjct: 32  LSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSK 91

Query: 63  TQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFY 110
              P   GGL +   +  N AL+SK  WR L ++++LW +++  K++
Sbjct: 92  VCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYH 138

BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match: A0A2N9HPD2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41707 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1    MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
            MY+SKGGR TLI +TLSS+P Y+LSLF  P KVA  + K+   F W G       H +NW
Sbjct: 1173 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 1232

Query: 61   AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
            A+   P  +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ +  G  W    
Sbjct: 1233 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 1292

Query: 121  IMGGSPKSL 130
            ++G +  SL
Sbjct: 1293 VLGPNGVSL 1300

BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match: A0A2N9GKX5 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27776 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1    MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
            MY+SKGGR TLI +TLSS+P Y+LSLF  P KVA  + K+   F W G       H +NW
Sbjct: 1121 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 1180

Query: 61   AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
            A+   P  +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ +  G  W    
Sbjct: 1181 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 1240

Query: 121  IMGGSPKSL 130
            ++G +  SL
Sbjct: 1241 VLGPNGVSL 1248

BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match: A0A2N9JAL9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61381 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0

Query: 1   MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
           MY+SKGGR TLI +TLSS+P Y+LSLF  P KVA  + K+   F W G       H +NW
Sbjct: 330 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 389

Query: 61  AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
           A+   P  +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ +  G  W    
Sbjct: 390 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 449

Query: 121 IMGGSPKSL 130
           ++G +  SL
Sbjct: 450 VLGPNGVSL 457

BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match: A0A438H6T1 (LINE-1 reverse transcriptase-like OS=Vitis vinifera OX=29760 GN=LIN1_89 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           YISKGGR TLI +TL+SMPIY +S+F+ P  VA+ L KL   F W G   +G  H +NW 
Sbjct: 758 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 817

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
                   GGL I    L N ALL KW WR+  D+DNLW+ +I  K Y      W PK  
Sbjct: 818 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQENFGWRPKKT 877

Query: 122 MG 124
           MG
Sbjct: 878 MG 878

BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match: A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 0

Query: 2    YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
            ++SKGGR TLI + LSS+P+Y+LSLFK P  V K L K++  F WEGS   GG H + W 
Sbjct: 1487 FLSKGGRLTLIQSVLSSLPLYFLSLFKAPRSVTKALEKMMRDFLWEGSESSGGEHLVAWD 1546

Query: 62   KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
            +   P   GGL I   +LRN +LL KW WRF  +Q++LW  ++ ++ Y  A   W  K  
Sbjct: 1547 EVCRPRHEGGLGIGRLELRNKSLLMKWLWRFPLEQNSLWHRVVVSR-YGRADNLWDSKKG 1606

Query: 122  MGGSPK 128
               SPK
Sbjct: 1607 SRLSPK 1611

BLAST of Lcy03g006290 vs. NCBI nr
Match: RVW80185.1 (LINE-1 reverse transcriptase-like [Vitis vinifera])

HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           YISKGGR TLI +TL+SMPIY +S+F+ P  VA+ L KL   F W G   +G  H +NW 
Sbjct: 758 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 817

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
                   GGL I    L N ALL KW WR+  D+DNLW+ +I  K Y      W PK  
Sbjct: 818 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQENFGWRPKKT 877

Query: 122 MG 124
           MG
Sbjct: 878 MG 878

BLAST of Lcy03g006290 vs. NCBI nr
Match: RVX23631.1 (LINE-1 reverse transcriptase-like [Vitis vinifera])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           YISKGGR TLI +TL+SMPIY +S+F+ P  VA+ L KL   F W G   +G  H +NW 
Sbjct: 654 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 713

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
                   GGL I    L N ALL KW WR+  D+DNLW+ +I  K Y      W PK  
Sbjct: 714 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQEDFGWRPKKT 773

Query: 122 MG 124
           MG
Sbjct: 774 MG 774

BLAST of Lcy03g006290 vs. NCBI nr
Match: RVW37283.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           YISKGGR TLI +TL+SMPIY +S+F+ P  VA+ L KL   F W G   +G  H +NW 
Sbjct: 312 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 371

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
                   GGL I    L N ALL KW WR+  D+DNLW+ +I  K Y      W PK  
Sbjct: 372 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQEDFGWRPKKT 431

Query: 122 MG 124
           MG
Sbjct: 432 MG 432

BLAST of Lcy03g006290 vs. NCBI nr
Match: XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])

HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           + SKGGR TLI + L  +P YYLSLF+ P KV + L K++  F WEG    GG H +NW 
Sbjct: 157 FFSKGGRLTLIQSVLRGIPNYYLSLFRIPVKVIEGLEKIMRDFLWEGVEEGGGAHLVNWK 216

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKF 109
           +   P   GGL + N +LRN A L+KW WRF H+   LWR II +K+
Sbjct: 217 EVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWRKIIVSKY 263

BLAST of Lcy03g006290 vs. NCBI nr
Match: RVW75239.1 (putative ribonuclease H protein [Vitis vinifera])

HSP 1 Score: 114.4 bits (285), Expect = 7.4e-22
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 0

Query: 2   YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
           YISKGGR TLI +TL+S+PIY LSL + P  VAK + ++   F W G   +G +H INW 
Sbjct: 12  YISKGGRITLIKSTLASIPIYLLSLIRIPKAVAKRIERIQRDFLWGGGCLEGKVHLINWK 71

Query: 62  KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
               P   GGLDI    L N ALL KW WR+ +++DNLW+ +I  K Y   G  W  K +
Sbjct: 72  VVCSPKEEGGLDIRKIDLLNKALLGKWVWRYAYEKDNLWKTVIGVK-YGQEGCGWKTKEV 131

Query: 122 MG 124
            G
Sbjct: 132 CG 132

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
P0C2F61.2e-1132.71Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... [more]
Match NameE-valueIdentityDescription
A0A2N9HPD29.4e-2344.96Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A2N9GKX59.4e-2344.96zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27776 P... [more]
A0A2N9JAL99.4e-2344.96Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... [more]
A0A438H6T12.1e-2247.54LINE-1 reverse transcriptase-like OS=Vitis vinifera OX=29760 GN=LIN1_89 PE=4 SV=... [more]
A0A803P4652.1e-2245.24Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
RVW80185.14.3e-2247.54LINE-1 reverse transcriptase-like [Vitis vinifera][more]
RVX23631.15.6e-2247.54LINE-1 reverse transcriptase-like [Vitis vinifera][more]
RVW37283.15.6e-2247.54putative ribonuclease H protein [Vitis vinifera][more]
XP_022151711.15.6e-2248.60uncharacterized protein LOC111019624 [Momordica charantia][more]
RVW75239.17.4e-2246.72putative ribonuclease H protein [Vitis vinifera][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 127..129
NoneNo IPR availablePANTHERPTHR33116:SF33OS01G0885550 PROTEINcoord: 5..105
NoneNo IPR availablePANTHERPTHR33116REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATEDcoord: 5..105

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g006290.1Lcy03g006290.1mRNA