Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA
mRNA sequence
ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA
Coding sequence (CDS)
ATGTACATTTCTAAAGGTGGCAGGTACACTCTAATTCATGCTACTCTCTCGAGTATGCCCATTTATTATCTATCTCTGTTTAAATTTCCAGCTAAGGTGGCCAAAGTTTTAGGCAAGCTCATTCTCCACTTCTTCTGGGAAGGTTCTTCAGGTGATGGGGGCTTACATAATATCAATTGGGCAAAGACACAACTCCCTCACATTATGGGAGGCCTTGATATTGTAAATTTTCAACTTAGAAATACTGCACTTTTATCAAAATGGTTTTGGAGATTTTTGCATGATCAAGACAACCTATGGAGAATAATTATTTTTGCTAAGTTTTACAATGTTGCTGGAATTTGTTGGTGGCCAAAGCCCATCATGGGAGGGTCACCAAAATCACTTTGA
Protein sequence
MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWAKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPIMGGSPKSL
Homology
BLAST of Lcy03g006290 vs. ExPASy Swiss-Prot
Match:
P0C2F6 (Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1g65750 PE=3 SV=1)
HSP 1 Score: 70.9 bits (172), Expect = 1.2e-11
Identity = 35/107 (32.71%), Postives = 57/107 (53.27%), Query Frame = 0
Query: 3 ISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWAK 62
+S GR TL A LSSMP++ +S P + L +L F W ++ H + W+K
Sbjct: 32 LSFAGRLTLTKAVLSSMPVHSMSTILLPQSILNRLDQLSRTFLWGSTAEKKKQHLVKWSK 91
Query: 63 TQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFY 110
P GGL + + N AL+SK WR L ++++LW +++ K++
Sbjct: 92 VCSPKKEGGLGVRAAKSMNRALISKVGWRLLQEKNSLWTLVLQKKYH 138
BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match:
A0A2N9HPD2 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS41707 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0
Query: 1 MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
MY+SKGGR TLI +TLSS+P Y+LSLF P KVA + K+ F W G H +NW
Sbjct: 1173 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 1232
Query: 61 AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
A+ P +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ + G W
Sbjct: 1233 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 1292
Query: 121 IMGGSPKSL 130
++G + SL
Sbjct: 1293 VLGPNGVSL 1300
BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match:
A0A2N9GKX5 (zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27776 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0
Query: 1 MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
MY+SKGGR TLI +TLSS+P Y+LSLF P KVA + K+ F W G H +NW
Sbjct: 1121 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 1180
Query: 61 AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
A+ P +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ + G W
Sbjct: 1181 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 1240
Query: 121 IMGGSPKSL 130
++G + SL
Sbjct: 1241 VLGPNGVSL 1248
BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match:
A0A2N9JAL9 (Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS61381 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 9.4e-23
Identity = 58/129 (44.96%), Postives = 80/129 (62.02%), Query Frame = 0
Query: 1 MYISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINW 60
MY+SKGGR TLI +TLSS+P Y+LSLF P KVA + K+ F W G H +NW
Sbjct: 330 MYLSKGGRLTLIKSTLSSLPTYFLSLFPIPVKVASRIDKIQRDFLWGGMGEGKKFHLVNW 389
Query: 61 AKTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKP 120
A+ P +GGL I N ++ N ALL KW WRF ++++ LWR++I AK+ + G W
Sbjct: 390 AQVCQPVHLGGLGIRNLRIFNKALLGKWLWRFGNEREALWRLVIVAKYGDQHG-GWSSGE 449
Query: 121 IMGGSPKSL 130
++G + SL
Sbjct: 450 VLGPNGVSL 457
BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match:
A0A438H6T1 (LINE-1 reverse transcriptase-like OS=Vitis vinifera OX=29760 GN=LIN1_89 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
YISKGGR TLI +TL+SMPIY +S+F+ P VA+ L KL F W G +G H +NW
Sbjct: 758 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 817
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
GGL I L N ALL KW WR+ D+DNLW+ +I K Y W PK
Sbjct: 818 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQENFGWRPKKT 877
Query: 122 MG 124
MG
Sbjct: 878 MG 878
BLAST of Lcy03g006290 vs. ExPASy TrEMBL
Match:
A0A803P465 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)
HSP 1 Score: 115.2 bits (287), Expect = 2.1e-22
Identity = 57/126 (45.24%), Postives = 76/126 (60.32%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
++SKGGR TLI + LSS+P+Y+LSLFK P V K L K++ F WEGS GG H + W
Sbjct: 1487 FLSKGGRLTLIQSVLSSLPLYFLSLFKAPRSVTKALEKMMRDFLWEGSESSGGEHLVAWD 1546
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
+ P GGL I +LRN +LL KW WRF +Q++LW ++ ++ Y A W K
Sbjct: 1547 EVCRPRHEGGLGIGRLELRNKSLLMKWLWRFPLEQNSLWHRVVVSR-YGRADNLWDSKKG 1606
Query: 122 MGGSPK 128
SPK
Sbjct: 1607 SRLSPK 1611
BLAST of Lcy03g006290 vs. NCBI nr
Match:
RVW80185.1 (LINE-1 reverse transcriptase-like [Vitis vinifera])
HSP 1 Score: 115.2 bits (287), Expect = 4.3e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
YISKGGR TLI +TL+SMPIY +S+F+ P VA+ L KL F W G +G H +NW
Sbjct: 758 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 817
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
GGL I L N ALL KW WR+ D+DNLW+ +I K Y W PK
Sbjct: 818 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQENFGWRPKKT 877
Query: 122 MG 124
MG
Sbjct: 878 MG 878
BLAST of Lcy03g006290 vs. NCBI nr
Match:
RVX23631.1 (LINE-1 reverse transcriptase-like [Vitis vinifera])
HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
YISKGGR TLI +TL+SMPIY +S+F+ P VA+ L KL F W G +G H +NW
Sbjct: 654 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 713
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
GGL I L N ALL KW WR+ D+DNLW+ +I K Y W PK
Sbjct: 714 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQEDFGWRPKKT 773
Query: 122 MG 124
MG
Sbjct: 774 MG 774
BLAST of Lcy03g006290 vs. NCBI nr
Match:
RVW37283.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
YISKGGR TLI +TL+SMPIY +S+F+ P VA+ L KL F W G +G H +NW
Sbjct: 312 YISKGGRVTLIKSTLASMPIYQMSIFRMPKMVARRLEKLQRDFLWGGGQMEGKTHLVNWE 371
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
GGL I L N ALL KW WR+ D+DNLW+ +I K Y W PK
Sbjct: 372 VVCTDKTKGGLGIRKLALLNKALLGKWIWRYASDKDNLWKQVIKVK-YGQEDFGWRPKKT 431
Query: 122 MG 124
MG
Sbjct: 432 MG 432
BLAST of Lcy03g006290 vs. NCBI nr
Match:
XP_022151711.1 (uncharacterized protein LOC111019624 [Momordica charantia])
HSP 1 Score: 114.8 bits (286), Expect = 5.6e-22
Identity = 52/107 (48.60%), Postives = 67/107 (62.62%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
+ SKGGR TLI + L +P YYLSLF+ P KV + L K++ F WEG GG H +NW
Sbjct: 157 FFSKGGRLTLIQSVLRGIPNYYLSLFRIPVKVIEGLEKIMRDFLWEGVEEGGGAHLVNWK 216
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKF 109
+ P GGL + N +LRN A L+KW WRF H+ LWR II +K+
Sbjct: 217 EVSKPLEAGGLGVGNLRLRNEAFLAKWLWRFFHEPHALWRKIIVSKY 263
BLAST of Lcy03g006290 vs. NCBI nr
Match:
RVW75239.1 (putative ribonuclease H protein [Vitis vinifera])
HSP 1 Score: 114.4 bits (285), Expect = 7.4e-22
Identity = 57/122 (46.72%), Postives = 73/122 (59.84%), Query Frame = 0
Query: 2 YISKGGRYTLIHATLSSMPIYYLSLFKFPAKVAKVLGKLILHFFWEGSSGDGGLHNINWA 61
YISKGGR TLI +TL+S+PIY LSL + P VAK + ++ F W G +G +H INW
Sbjct: 12 YISKGGRITLIKSTLASIPIYLLSLIRIPKAVAKRIERIQRDFLWGGGCLEGKVHLINWK 71
Query: 62 KTQLPHIMGGLDIVNFQLRNTALLSKWFWRFLHDQDNLWRIIIFAKFYNVAGICWWPKPI 121
P GGLDI L N ALL KW WR+ +++DNLW+ +I K Y G W K +
Sbjct: 72 VVCSPKEEGGLDIRKIDLLNKALLGKWVWRYAYEKDNLWKTVIGVK-YGQEGCGWKTKEV 131
Query: 122 MG 124
G
Sbjct: 132 CG 132
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
P0C2F6 | 1.2e-11 | 32.71 | Putative ribonuclease H protein At1g65750 OS=Arabidopsis thaliana OX=3702 GN=At1... | [more] |
Match Name | E-value | Identity | Description | |
A0A2N9HPD2 | 9.4e-23 | 44.96 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A2N9GKX5 | 9.4e-23 | 44.96 | zf-RVT domain-containing protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS27776 P... | [more] |
A0A2N9JAL9 | 9.4e-23 | 44.96 | Reverse transcriptase domain-containing protein OS=Fagus sylvatica OX=28930 GN=F... | [more] |
A0A438H6T1 | 2.1e-22 | 47.54 | LINE-1 reverse transcriptase-like OS=Vitis vinifera OX=29760 GN=LIN1_89 PE=4 SV=... | [more] |
A0A803P465 | 2.1e-22 | 45.24 | Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
RVW80185.1 | 4.3e-22 | 47.54 | LINE-1 reverse transcriptase-like [Vitis vinifera] | [more] |
RVX23631.1 | 5.6e-22 | 47.54 | LINE-1 reverse transcriptase-like [Vitis vinifera] | [more] |
RVW37283.1 | 5.6e-22 | 47.54 | putative ribonuclease H protein [Vitis vinifera] | [more] |
XP_022151711.1 | 5.6e-22 | 48.60 | uncharacterized protein LOC111019624 [Momordica charantia] | [more] |
RVW75239.1 | 7.4e-22 | 46.72 | putative ribonuclease H protein [Vitis vinifera] | [more] |
Match Name | E-value | Identity | Description | |