Lcy03g005960 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g005960
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	protein RALF-like 10
Location	Chr03: 32569073 .. 32569515 (-)
RNA-Seq Expression	Lcy03g005960
Synteny	Lcy03g005960

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGAAAGAAGACGAAAAGAAATCGTGATCAGAGAGAAAGAAAATGAAGTCATGGGTGATAAGTTTGGTTTTAATTAGCATGTTGGTGATGGGCCAAGAAGTAGCAGCGGAGAAAAAACATCTTAAAATCGACCAATGCAATCAGCCAACACCACCTCCAGGTTGTTCTTCATCGATTTCTACACCTATTCCTGCTAATCCTCATAATCGAGGTTGCTCTGCTCACCAACGTTGTCGTGGAGGATGATATCAATCAATATTTGAAATTCTCTTTATCCCTTGATATATCAAAGGTAAAAGAATAAGACCATTTAAGTGGAGCCAATTATAGGACGTTTACAATCTGTGAATGATATATATGTATTTGGTTAGAATAAGGTCATTCGAGAAAGAGTTTGATTTTTCATATACATTATGTGTAATCCAATGACAACTTAACTGTAAT

mRNA sequence

AGAAAGAAGACGAAAAGAAATCGTGATCAGAGAGAAAGAAAATGAAGTCATGGGTGATAAGTTTGGTTTTAATTAGCATGTTGGTGATGGGCCAAGAAGTAGCAGCGGAGAAAAAACATCTTAAAATCGACCAATGCAATCAGCCAACACCACCTCCAGGTTGTTCTTCATCGATTTCTACACCTATTCCTGCTAATCCTCATAATCGAGGTTGCTCTGCTCACCAACGTTGTCGTGGAGGATGATATCAATCAATATTTGAAATTCTCTTTATCCCTTGATATATCAAAGGTAAAAGAATAAGACCATTTAAGTGGAGCCAATTATAGGACGTTTACAATCTGTGAATGATATATATGTATTTGGTTAGAATAAGGTCATTCGAGAAAGAGTTTGATTTTTCATATACATTATGTGTAATCCAATGACAACTTAACTGTAAT

Coding sequence (CDS)

ATGAAGTCATGGGTGATAAGTTTGGTTTTAATTAGCATGTTGGTGATGGGCCAAGAAGTAGCAGCGGAGAAAAAACATCTTAAAATCGACCAATGCAATCAGCCAACACCACCTCCAGGTTGTTCTTCATCGATTTCTACACCTATTCCTGCTAATCCTCATAATCGAGGTTGCTCTGCTCACCAACGTTGTCGTGGAGGATGA

Protein sequence

MKSWVISLVLISMLVMGQEVAAEKKHLKIDQCNQPTPPPGCSSSISTPIPANPHNRGCSAHQRCRGG

Homology

[Close]

BLAST of Lcy03g005960 vs. ExPASy Swiss-Prot
Match: F4ISE1 (Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 5.2e-06
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEK--KHLKIDQCNQPTPPPGCS---SSISTPIPANPHN 60
          MK+WVI L++I  +V+ + V +    ++  I++C  P PPPGC+   +    P P N ++
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 60

Query: 61 RGCSAHQRCR 66
          RGCS   RCR
Sbjct: 61 RGCSKIHRCR 70

[Close]

BLAST of Lcy03g005960 vs. ExPASy Swiss-Prot
Match: O65919 (Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1)

HSP 1 Score: 48.9 bits (115), Expect = 2.6e-05
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLK---IDQCNQPTPPPGC---SSSISTPIPANPH 60
          MK+ VI L++I   V+   V + +KHL    I +C  P PPPGC    +    P PAN +
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRGCSAHQRCR 66
           RGCS   RC+
Sbjct: 61 RRGCSKITRCK 71

[Close]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL
Match: A0A0A0LI94 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 45/68 (66.18%), Postives = 50/68 (73.53%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLK-IDQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          MKSW+I L LI MLV+GQEVAAE KHLK ID CNQP+PPP C +       ANP+NR CS
Sbjct: 1  MKSWLICLALIGMLVVGQEVAAETKHLKFIDPCNQPSPPPTCPNRDKVE-EANPYNRDCS 60

Query: 61 AHQRCRGG 68
          A  RCRGG
Sbjct: 61 AINRCRGG 67

[Close]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL
Match: A0A6J1G7J2 (protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 1.7e-12
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          M+SW+I LVLI MLV+ Q+VA+E K LK  D C QP PPPGC  SI   +PANP+ RGCS
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGC--SIGNAVPANPYRRGCS 60

Query: 61 AHQRCRGG 68
             RCRGG
Sbjct: 61 KITRCRGG 66

[Close]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL
Match: A0A0A0M0X3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 3.0e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          MKSW+I +V ISMLVM QEV A+  HLK  + C+ P+PPP CSS +    P NP++RGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AHQRCRG 67
          A  RCRG
Sbjct: 61 AIHRCRG 67

[Close]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL
Match: A0A1S4DY33 (protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 3.8e-07
Identity = 37/70 (52.86%), Postives = 46/70 (65.71%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLK-IDQCNQPTPPPGC--SSSISTPIPANPHNRG 60
          MKSW+I   L+SMLVMG EVAA+ K LK +D C QP+PP  C     + +PI    ++RG
Sbjct: 1  MKSWLICFALLSMLVMGHEVAAKTKFLKFLDPCLQPSPPRSCYKHERVDSPI---AYDRG 60

Query: 61 CSAHQRCRGG 68
          CS   RCRGG
Sbjct: 61 CSPILRCRGG 67

[Close]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL
Match: A0A0A0LZK3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 36/68 (52.94%), Postives = 41/68 (60.29%), Query Frame = 0


Query: 1   MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
           MKSW+I   L+SMLVM  EVAAE K L   D C QP+PP  C        P  P++RGCS
Sbjct: 34  MKSWLICFALLSMLVMSHEVAAEGKFLNFSDLCLQPSPPKSCYKDERADSPI-PYDRGCS 93

Query: 61  AHQRCRGG 68
              RCRGG
Sbjct: 94  PILRCRGG 100

[Close]

BLAST of Lcy03g005960 vs. NCBI nr
Match: XP_038877580.1 (protein RALF-like 11 [Benincasa hispida])

HSP 1 Score: 84.0 bits (206), Expect = 5.5e-13
Identity = 43/68 (63.24%), Postives = 52/68 (76.47%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLK-IDQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          MKSW+I +V ISMLV+G  VAAEKK+L+ +D CNQP PPP C S +   + ANP+NRGCS
Sbjct: 1  MKSWLICVVFISMLVVGPGVAAEKKYLQFLDPCNQPNPPPTC-SEVKEQVEANPYNRGCS 60

Query: 61 AHQRCRGG 68
          A  RCRGG
Sbjct: 61 AIHRCRGG 67

[Close]

BLAST of Lcy03g005960 vs. NCBI nr
Match: XP_022947821.1 (protein RALF-like 10 [Cucurbita moschata])

HSP 1 Score: 81.3 bits (199), Expect = 3.6e-12
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          M+SW+I LVLI MLV+ Q+VA+E K LK  D C QP PPPGC  SI   +PANP+ RGCS
Sbjct: 1  MRSWLICLVLIGMLVVSQDVASETKFLKFPDPCQQPNPPPGC--SIGNAVPANPYRRGCS 60

Query: 61 AHQRCRGG 68
             RCRGG
Sbjct: 61 KITRCRGG 66

[Close]

BLAST of Lcy03g005960 vs. NCBI nr
Match: KAE8637268.1 (hypothetical protein CSA_017684 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 6.1e-12
Identity = 39/67 (58.21%), Postives = 48/67 (71.64%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          MKSW+I +V ISMLVM QEV A+  HLK  + C+ P+PPP CSS +    P NP++RGCS
Sbjct: 1  MKSWLICVVFISMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCS 60

Query: 61 AHQRCRG 67
          A  RCRG
Sbjct: 61 AIHRCRG 67

[Close]

BLAST of Lcy03g005960 vs. NCBI nr
Match: XP_023533089.1 (protein RALF-like 10 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 79.3 bits (194), Expect = 1.4e-11
Identity = 42/68 (61.76%), Postives = 49/68 (72.06%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCS 60
          M+SW+I +VLISMLV+ QEVA+E K LK  D C QP PP GC  SI   +PANP+ RGCS
Sbjct: 1  MRSWLICIVLISMLVVSQEVASETKFLKFPDPCQQPNPPLGC--SIGNAVPANPYRRGCS 60

Query: 61 AHQRCRGG 68
             RCRGG
Sbjct: 61 KITRCRGG 66

[Close]

BLAST of Lcy03g005960 vs. NCBI nr
Match: KAE8653619.1 (hypothetical protein Csa_007305 [Cucumis sativus])

HSP 1 Score: 68.2 bits (165), Expect = 3.1e-08
Identity = 33/58 (56.90%), Postives = 40/58 (68.97%), Query Frame = 0


Query: 10  LISMLVMGQEVAAEKKHLKI-DQCNQPTPPPGCSSSISTPIPANPHNRGCSAHQRCRG 67
           L SMLVM QEV A+  HLK  + C+ P+PPP CSS +    P NP++RGCSA  RCRG
Sbjct: 49  LASMLVMSQEVGAQTNHLKFPNPCDLPSPPPSCSSKVKDHAPTNPYDRGCSAIHRCRG 106

[Close]

BLAST of Lcy03g005960 vs. TAIR 10
Match: AT2G19040.1 (RALF-like 12 )

HSP 1 Score: 51.2 bits (121), Expect = 3.7e-07
Identity = 27/70 (38.57%), Postives = 42/70 (60.00%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEK--KHLKIDQCNQPTPPPGCS---SSISTPIPANPHN 60
          MK+WVI L++I  +V+ + V +    ++  I++C  P PPPGC+   +    P P N ++
Sbjct: 1  MKAWVIGLLVICAVVIAEPVESRNYIEYGAINKCAGPNPPPGCNPPGTEQKNPTPVNEYS 60

Query: 61 RGCSAHQRCR 66
          RGCS   RCR
Sbjct: 61 RGCSKIHRCR 70

[Close]

BLAST of Lcy03g005960 vs. TAIR 10
Match: AT2G19020.1 (ralf-like 10 )

HSP 1 Score: 48.9 bits (115), Expect = 1.8e-06
Identity = 29/71 (40.85%), Postives = 39/71 (54.93%), Query Frame = 0


Query: 1  MKSWVISLVLISMLVMGQEVAAEKKHLK---IDQCNQPTPPPGC---SSSISTPIPANPH 60
          MK+ VI L++I   V+   V + +KHL    I +C  P PPPGC    +    P PAN +
Sbjct: 1  MKALVICLLVIFAAVIAVPVESRRKHLDYGVITKCAGPNPPPGCYPPGAQQKNPTPANEY 60

Query: 61 NRGCSAHQRCR 66
           RGCS   RC+
Sbjct: 61 RRGCSKITRCK 71

The following BLAST results are available for this feature:

BLAST of Lcy03g005960 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4ISE1	5.2e-06	38.57	Protein RALF-like 12 OS=Arabidopsis thaliana OX=3702 GN=RALFL12 PE=2 SV=1	[more]
O65919	2.6e-05	40.85	Protein RALF-like 10 OS=Arabidopsis thaliana OX=3702 GN=RALFL10 PE=2 SV=1	[more]

BLAST of Lcy03g005960 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LI94	6.0e-13	66.18	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G191310 PE=3 SV=1	[more]
A0A6J1G7J2	1.7e-12	61.76	protein RALF-like 10 OS=Cucurbita moschata OX=3662 GN=LOC111451581 PE=3 SV=1	[more]
A0A0A0M0X3	3.0e-12	58.21	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690160 PE=3 SV=1	[more]
A0A1S4DY33	3.8e-07	52.86	protein RALF-like 30 OS=Cucumis melo OX=3656 GN=LOC107991083 PE=3 SV=1	[more]
A0A0A0LZK3	1.1e-06	52.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G610770 PE=3 SV=1	[more]

BLAST of Lcy03g005960 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877580.1	5.5e-13	63.24	protein RALF-like 11 [Benincasa hispida]	[more]
XP_022947821.1	3.6e-12	61.76	protein RALF-like 10 [Cucurbita moschata]	[more]
KAE8637268.1	6.1e-12	58.21	hypothetical protein CSA_017684 [Cucumis sativus]	[more]
XP_023533089.1	1.4e-11	61.76	protein RALF-like 10 [Cucurbita pepo subsp. pepo]	[more]
KAE8653619.1	3.1e-08	56.90	hypothetical protein Csa_007305 [Cucumis sativus]	[more]

BLAST of Lcy03g005960 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19040.1	3.7e-07	38.57	RALF-like 12	[more]
AT2G19020.1	1.8e-06	40.85	ralf-like 10	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008801	Rapid ALkalinization Factor	PFAM	PF05498	RALF	coord: 31..66 e-value: 1.1E-7 score: 32.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..67
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..53
None	No IPR available	PANTHER	PTHR34270	PROTEIN RALF-LIKE 15-RELATED	coord: 1..67
None	No IPR available	PANTHER	PTHR34270:SF5	PROTEIN RALF-LIKE 10-RELATED	coord: 1..67

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g005960.1	Lcy03g005960.1	mRNA