Lcy03g005780 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g005780
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRNase H domain-containing protein
LocationChr03: 31612575 .. 31616735 (+)
RNA-Seq ExpressionLcy03g005780
SyntenyLcy03g005780
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACCCATCCGAATATCCATCAGTTTACAGTGGCACAACTTATAGACAACTATGGCAGATGGAATGAGCCTTTGGTTCGAGGCTCTTTTACGGAAGAGGATGCAATGAGAATTCTAAATATCCCTCTGAGCTCGTTGCTAAAGGAGGATGAGGTTATTTGGAATCTTGATTCAAAGGGGCAATTCTCCGTCAAAAGTGCTTATAGGTTGGGTCGACACCTATTACAGGCCAATGAAGCTTCCCATCAAGCCTTTAGCATCAAGAATGTTTCTGGAAATCTTTTTGGAGCTCTAAAATTCCCTCCAAAATAAAACACTGTGGCTGGAAAATTTACAATGACATTTTTCCTACCCTATCTAATTTGATTACTCGTGGATTGGATATTAATCCCATATGTTACTTGTGTAGGGATAAACTAGAATCAGCTGAGCACTTATTCTGGGAGTGTAAAGCGATAAAAGGGTTGTGGTATAACTATTTTCCTTCGACTAAGTTAATTTGTTTGGATGGCAAGAAAGGATGGACCACTCAAGAATATTGTGAAAGCATGTGGAAAGGTAGCAAGGACGGACATTTAGATGAGCAGAGATTAAGCACAAGCCTGGTGATCTGTTGGCAGATATGGGACTACAGAAATTCGATATACAAAAGAAAACAGCAGCCCAACCTAAAGATGTTGAAGGACCGAATAGATACCTACCTTGAAGAGTTCAATTGCCAGGGAAGCCAGCCGCGCACACATCCAACCACCCATGCAAATAACGTCAGCAATCTTCCATTAATTGGGACTTGGATTCCACCGTCGGATAACCAGATGAAGTTAAGTTGCGATGCCACCTGGAGTGACTGTCGAAGGCAAATTGGAATCGGCTGGATCTTACGGCAGTCGAACGACAAGCCGTTGGTAGCAGGGTTCAAATGCATCAAACGTCAATGGAGGATTAGTTGGTTGGAGGCGTTGGCTATTTGTGAAGGGCTGAGATACATTCCGAAGCAGGTTGTCGGAGTTCACATCGAATCAGACGCATGCAATGTGGTGAAGCTTCTCACGTCCAACGATGAGGATATAACCAAGATTTCCAATTTTATCTCTGAAGCTAAAGCCCTAATTGAAGCCCAAAACATTGTTTCAATAAAGTATGTGAGTAGATCTCATAATGGTATAGCCCACCAATTGGCTACTAAAGCATGCCAAGGTGGAGCATCAACTTATTGGGAGAATTTTTTTTCCTGATTGGGTGATAGGTTTAAATTTAATTGACATTGGGTTTGGTAATCAAATTAGTGGGGATCCTGTCCCACAATTGATATCCCAATGGAAAGTTTATCTTTGATTTAATGAAGTATTCTTTATAAAAAAAACACATGAAATATCTTATTGATTAATTTATTTAATAAAAAGAAATTAAAACTCTCTAAAAAATGAGGAAAATGATAGAGATTTATATAGAAAAAAAAACAAGTAAAAGCTGGTTAATGAAAATGAGAAAAAAAAAAAAGATAAAAACAAATAAGAAAAATGGAAAACGAGGAGAGATAAAAAAAAATGAAAAGAGAAAAAAAAAGGAAAAAGAATAAGAAGAATTAGGAAGTATTAAAAGGGAAAAAATATTTTTTAAAAAAAAAGGGAAAAAGAAGTTACTAACGGGAAAGAAAGAAATGAGAGAGAAAGAGGAGAGATGAGTGTAGAAATGAGAGAGAGTGAAATGCATGAAAATTGAAAAAGAAACAAAAACAGAATTTTGAGAAATTACTATTCGTGGATTTTTCAAACTTTATCCCATTTTCATAAACAATTTTTAAAGTTTAGAAACAAAATTTATCAAACATGTCTGCTTTCTTAAAAAAATGAGAAACAAAAATCAAAAGCAAAACACAACAACATCATCTAACAAGCTTCAGACTAAAAGTTGAACTTATCCTTTATGTTTTTTTTTTCTTTTTCTTTTTTAAATATTAGTGAAATCTTATCATAATTTTAAAAATATAGTTTTTAAAACACTGTTTTTTCAAACGTTTTAGAATTCATAAAAAGTAAAAAGGTATAAAAGGCTATTTTTCCAAAGATAGGTATGTTTATATGAACGAGCTTCAAGTTTGAATTTCTATCATTATATACTGGGATAGACTATATGTCCGTTTGGAATATCTTTTAACTTAAGTATTTTTCAAGAATGATTTTTTAAAAATATTTGATATAAAAGTTGTTTCTATATGCAAGTTATTATATATACTCAAAAACACTTTTAAAAAAAAATTACTTTCAAGTATTTTTCTCAAAATAATTTATTATTTCTCAATTTCATTTTTTAATAAGTCGTTTTTAGTGGTTCTCAAACACTAATTTTTTTTTTCAAAATGATTTTTATTTTTTCAAAATTAAACACTTGAAAAGTTAAATCAAACATCAAACTCATTAGCTTAAATTTTGGGGTTCATTGATGATTTTACAAATATTGTATAAGAAGTTAAAAATTAATAACACAATAGTAAAAGGACGAAAATGAAAACTTAAACTTTAAAAACAAAATTAGTTGACTAACTTAATGCAATAAACTTGGAAGCTGGTTCTTCTTATCTCTAATTAATAAGATGATTCGAGAGAATGAAACAAAAGTTAAAAAGGTTGATACTACACTACCAACGGTTGTGAATTGAGCTCCAGCTTCCTTATTTTATTTAGGTTAAATTCTCAAAAATACCCTTGAACTATAAAAATACCCCTAAACTATGAGATATTGGTTTCAATTATACCCCTGAACTTTTAAAAGTTTCATTTTAGTGCCCGAAGTTCAAAGTAACGACCATTGAAGACATTTTCCGTTAAATTTATAGACGAAAAATGATATATGTTTGCATGTGTTTAATTTTATTGTTTTTTCCACGTGTATATGTTCAAATATGTTCACATAATTAGCAACAGTGTCTATGTAAACACGTCATTTTCCGTCCATAAATTTAACGAAAAAATGCCTTCAAAGATTGTTTTGAAACAAAATTCAAATTTCGAAGGTTGAGACCCCGTTTGATAATCATTTCGGCCCCGTTTGATAACCATTTCGTTTTTTGTTTTTGGTTTTTGAAAATAAAGCTTATACACACCTACTTTCACTTATAAGTTTCTTTGTTTTAGTAAGAACCTTCTCTCTTTTTTTAAAAAACCAAGTCCAATTTTGAAAACAAAAAAAAAGTAGTTTTCAAAAACTTGTTTTTGTTTTTAGAATTTTTCTAGGAATTCAAATGGATCGTTAACAAGGATGAAAGCCATGGTAGGGAATTTAGGAGAAAACAAGCATAATTTTCAAAAACCAAAAACAAAAAACGAAATGATTATCAAACGGGGCTTTCGTTTTTGGTTTTTGGTTTTTGAAAATTAAGCCTATAAACTCTATTTTTACCCACAAGCTTCTTTATTTTTTATCTACATCCTTTCCCATGTTTTCAAAAACCAAGCCAAATTTTGAAAACAAAAAAAAAATAGTTTTCAAAAACTTGTTTTTGTTTTTGGAATTTGGCTAGGAACTCAAATGTCTCCTTAACAAAAATGAAAACCGTTGTAAGAAGTTTGAGAGAAAACAAGCACAATTTTCAAAAACCAAAATCCAAAAACGAAATGGTTATCAAACGGGACCTAAAATGTAACTTTTGAATGTTGAGAAGTATAATTGAAACCAACCTCATAGTTCAAGGTATTTTTGATAAGTTAGCCTTTTATTTATTTATTTATTTTTTGAGTCACTTGAGATTCCTTATTCTTTATATAGCCAAACACACTTTATATAAAGAAGAAGGCAATATCCAAAATTGTTGTGGAAAATTCGAGGCGTTGGATTTAGGTACCTTCTGACCAAAAGAAATTCATTTCGATCTTCCTTTAAAATGTTTTTTTTTTTTTTTCTTTTCTTTTTTTCTTAGCCAAAAAAGCATATGATAACGACTCTTCTTCTTTCTTATTTTGATGTTTCCTTTATATTTATGCAGCTCAATCTAATCGTCGGTTCATTCATATCTAAGGTGAGTGAAATTTTATGTTTTTTTTGGAATGTTTGTTTGTTGTTTGTGTATTGAAAAAAATAAAGCTTCAAATATTTGTGTTCATGATCATGTTTGTTATATTTTTGCAGTGTTTGAAGCTGTTGAAATTTGCAGCTGATCTTTGA

mRNA sequence

ATGACCCATCCGAATATCCATCAGTTTACAGTGGCACAACTTATAGACAACTATGGCAGATGGAATGAGCCTTTGGTTCGAGGCTCTTTTACGGAAGAGGATGCAATGAGAATTCTAAATATCCCTCTGAGCTCGTTGCTAAAGGAGGATGAGGTTATTTGGAATCTTGATTCAAAGGGGCAATTCTCCGTCAAAAGTGCTTATAGGGATAAACTAGAATCAGCTGAGCACTTATTCTGGGAGTGTAAAGCGATAAAAGGGTTGTGGTATAACTATTTTCCTTCGACTAAGTTAATTTGTTTGGATGGCAAGAAAGGATGGACCACTCAAGAATATTGTGAAAGCATGTGGAAAGGTAGCAAGGACGGACATTTAGATGAGCAGAGATTAAGCACAAGCCTGGTGATCTGTTGGCAGATATGGGACTACAGAAATTCGATATACAAAAGAAAACAGCAGCCCAACCTAAAGATGTTGAAGGACCGAATAGATACCTACCTTGAAGAGTTCAATTGCCAGGGAAGCCAGCCGCGCACACATCCAACCACCCATGCAAATAACGTCAGCAATCTTCCATTAATTGGGACTTGGATTCCACCGTCGGATAACCAGATGAAGTTAAGTTGCGATGCCACCTGGAGTGACTGTCGAAGGCAAATTGGAATCGGCTGGATCTTACGGCAGTCGAACGACAAGCCGTTGGTAGCAGGGTTCAAATGCATCAAACGTCAATGGAGGATTAGTTGGTTGGAGGCGTTGGCTATTTGTGAAGGGCTGAGATACATTCCGAAGCAGGTTGTCGGAGTTCACATCGAATCAGACGCATGCAATGTGGTGAAGCTTCTCACGTCCAACGATGAGGATATAACCAAGATTTCCAATTTTATCTCTGAAGCTAAAGCCCTAATTGAAGCCCAAAACATTGTTTCAATAAAGTATCTCAATCTAATCGTCGGTTCATTCATATCTAAGTGTTTGAAGCTGTTGAAATTTGCAGCTGATCTTTGA

Coding sequence (CDS)

ATGACCCATCCGAATATCCATCAGTTTACAGTGGCACAACTTATAGACAACTATGGCAGATGGAATGAGCCTTTGGTTCGAGGCTCTTTTACGGAAGAGGATGCAATGAGAATTCTAAATATCCCTCTGAGCTCGTTGCTAAAGGAGGATGAGGTTATTTGGAATCTTGATTCAAAGGGGCAATTCTCCGTCAAAAGTGCTTATAGGGATAAACTAGAATCAGCTGAGCACTTATTCTGGGAGTGTAAAGCGATAAAAGGGTTGTGGTATAACTATTTTCCTTCGACTAAGTTAATTTGTTTGGATGGCAAGAAAGGATGGACCACTCAAGAATATTGTGAAAGCATGTGGAAAGGTAGCAAGGACGGACATTTAGATGAGCAGAGATTAAGCACAAGCCTGGTGATCTGTTGGCAGATATGGGACTACAGAAATTCGATATACAAAAGAAAACAGCAGCCCAACCTAAAGATGTTGAAGGACCGAATAGATACCTACCTTGAAGAGTTCAATTGCCAGGGAAGCCAGCCGCGCACACATCCAACCACCCATGCAAATAACGTCAGCAATCTTCCATTAATTGGGACTTGGATTCCACCGTCGGATAACCAGATGAAGTTAAGTTGCGATGCCACCTGGAGTGACTGTCGAAGGCAAATTGGAATCGGCTGGATCTTACGGCAGTCGAACGACAAGCCGTTGGTAGCAGGGTTCAAATGCATCAAACGTCAATGGAGGATTAGTTGGTTGGAGGCGTTGGCTATTTGTGAAGGGCTGAGATACATTCCGAAGCAGGTTGTCGGAGTTCACATCGAATCAGACGCATGCAATGTGGTGAAGCTTCTCACGTCCAACGATGAGGATATAACCAAGATTTCCAATTTTATCTCTGAAGCTAAAGCCCTAATTGAAGCCCAAAACATTGTTTCAATAAAGTATCTCAATCTAATCGTCGGTTCATTCATATCTAAGTGTTTGAAGCTGTTGAAATTTGCAGCTGATCTTTGA

Protein sequence

MTHPNIHQFTVAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYRDKLESAEHLFWECKAIKGLWYNYFPSTKLICLDGKKGWTTQEYCESMWKGSKDGHLDEQRLSTSLVICWQIWDYRNSIYKRKQQPNLKMLKDRIDTYLEEFNCQGSQPRTHPTTHANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRYIPKQVVGVHIESDACNVVKLLTSNDEDITKISNFISEAKALIEAQNIVSIKYLNLIVGSFISKCLKLLKFAADL
Homology
BLAST of Lcy03g005780 vs. ExPASy TrEMBL
Match: A0A6J1DL64 (uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111022134 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.1e-25
Identity = 74/221 (33.48%), Postives = 115/221 (52.04%), Query Frame = 0

Query: 68  YRDKLESAEHLFWECKAIKGLWYNYFPSTKLICLDGKKGWTTQEYCESMWKGSKDGHLDE 127
           +R K E+ +H+ WECK IK +W N  P         +  WTT+EY E  W   K G  + 
Sbjct: 130 FRKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWE--WLMDKAGEEER 189

Query: 128 QRLSTSLVICWQIWDYRN-SIYK--RKQQPNLKMLKDR--IDTYLEEFNCQGSQPRTHPT 187
           +R   S++I  QIW+ RN SI+K    +  ++++  DR  I++  ++ N +      HP 
Sbjct: 190 RR---SMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPI 249

Query: 188 THANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSNDKPLVAGFKCIK 247
               + +       W PP+ N  KL+ DA W       GIGWILR    + +  G + I+
Sbjct: 250 RRIGDNTR----ARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 309

Query: 248 RQWRISWLEALAICEGLRYIPKQ-VVGVHIESDACNVVKLL 283
            +  I++LE +AICEGLR I ++    +H+ESD+   + LL
Sbjct: 310 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

BLAST of Lcy03g005780 vs. ExPASy TrEMBL
Match: A0A5C7IST2 (RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 1.4e-22
Identity = 92/332 (27.71%), Postives = 145/332 (43.67%), Query Frame = 0

Query: 11  VAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYRD 70
           V+ LI++ G+WNE L+R +F  E+A  IL+IPLS  L+ D  +W+ +  G F+VKSAYR 
Sbjct: 44  VSTLIESPGKWNESLIRRNFLPEEAELILSIPLSVYLRRDSFLWHFNKDGTFTVKSAYRV 103

Query: 71  KL----------------------ESAEHLFWECKAIKGLWYN--YFPSTKLICLDGKKG 130
            +                      E+ EH  W CK++K  W +   F     + +D   G
Sbjct: 104 AISAMKRFEAFCSSALCPLCREGPETVEHALWRCKSVKPEWNHCPLFSDLNKLKIDDFLG 163

Query: 131 WTTQEYCESMWKGSKDGHLDEQRLSTSLVICWQIWDYRN-SIYKRKQQPNLKMLKDRIDT 190
                    +W  S     + + +   +   W +W+ RN S+++ K     K   D   T
Sbjct: 164 -------RVIWVASV---ANLENVVNFITTAWLVWNNRNQSLFREK----AKCWGDSW-T 223

Query: 191 YLEEFNCQGSQPRTHPTTHANNVSNLP--LIGTWIPPSDNQMKLSCDATWSDCRRQIGIG 250
               F   G    T      NN S +P  +I  WIPPS   +K++ DA     R +  +G
Sbjct: 224 KATLFLSGGKTIETQ-----NNSSAIPSLVIKNWIPPSFGTIKVNVDAALDVGRNKFSVG 283

Query: 251 WILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRYIPKQ-VVGVHIESDACNVVKLL 310
            ++R S+ + L +       +      EA  I EGL       +  + IESD+ NVV+L 
Sbjct: 284 IVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATSSGLQPLSIESDSLNVVRLC 343

Query: 311 TSNDEDITKISNFISEAKALIEAQNIVSIKYL 315
                    + N I + + L+  +   SI Y+
Sbjct: 344 NGEISTRNDVFNVICDIQFLLSRERKTSISYI 355

BLAST of Lcy03g005780 vs. ExPASy TrEMBL
Match: A0A803QGM9 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 6.6e-20
Identity = 86/332 (25.90%), Postives = 144/332 (43.37%), Query Frame = 0

Query: 10   TVAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYR 69
            TVA LI N   W+ PL+R  F       IL+IPLS     D +IW     G +SVKS + 
Sbjct: 1895 TVASLIKNDMSWDFPLIRNYFPTHIVQEILSIPLSLQPSSDTLIWEHTKLGVYSVKSGHH 1954

Query: 70   DKLESAEHLFWECKAI-----KGLWYNYFP--STKLICLDGKKGWTTQEYCESMWKGSKD 129
              L S   L     +      K LW+   P  S + +C    KG    +Y  S    S  
Sbjct: 1955 ISLSSTAPLDIPSSSTPSPWWKNLWHLNIPPKSVQRVC----KGTIFYDYVFSS-PPSIT 2014

Query: 130  GH---------LDEQRLSTSLVICWQIWDYRNSIYKRKQQPNLKMLKDRIDTYLEEFNCQ 189
             H         L ++ + + L + W IW+ RN   +R+ Q     + D  + +L E+   
Sbjct: 2015 FHDIAHTIYVNLTKEEVESFLCVAWLIWNNRNRALRRQSQDQTHAIVDLANCFLVEYKSV 2074

Query: 190  GSQPRTHPTTHANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSNDKP 249
             S    +P   A   S+ P   +W PP   ++KL+ D    +    +G G ++R S+   
Sbjct: 2075 VS--TRNPQACA---SSTPSATSWTPPDPGRLKLNVDTVVPNDPSNVGFGGVIRNSDGLV 2134

Query: 250  LVAGFKCIKRQWRISWLEALAICEGLRYIPKQVVGVH-IESDACNVVKLLTSNDEDITKI 309
            + A      +   IS LEA ++   LR+  ++   +H +E+D   +   L+ + ED++  
Sbjct: 2135 VAAVASSYAKGGDISTLEAKSLLLSLRWCVEESFPIHCVETDCKAISDALSHSREDLSSF 2194

Query: 310  SNFISEAKALIEAQNIVSIKYLNLIVGSFISK 325
             + I++ +A +       + ++N    +F  K
Sbjct: 2195 DDIINQIRATLSLIPGAYVTHVNQTANTFAHK 2216

BLAST of Lcy03g005780 vs. ExPASy TrEMBL
Match: B8BN96 (Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_37529 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 9.6e-19
Identity = 84/331 (25.38%), Postives = 136/331 (41.09%), Query Frame = 0

Query: 11   VAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYR- 70
            V+ LI   G W+ P +   F   DA  ILNI +SS  +ED + W+ D  G FSV+SAYR 
Sbjct: 1417 VSDLITEDGSWDVPKIHQYFHNLDAEVILNICISSRSEEDFIAWHPDKNGMFSVRSAYRL 1476

Query: 71   ---------------DKLESAEHLFWECKAIKGLWYNYFPSTKLICLDGKKGWTTQEYCE 130
                           + +  A  + W+CK  +          K+        W     C 
Sbjct: 1477 AAQLVNIEESSSSGTNNINKAWEMIWKCKVPQ--------KVKIF------AWRVASNCL 1536

Query: 131  SMWKGSKDGHLDEQRLSTSLVICWQIWDYRNSIYKRKQQPNLKMLKDRIDTYLEEFNCQG 190
            +              ++  L+  W+ W  RN +   K  P  +  +  I +Y++      
Sbjct: 1537 A-------------TMAMFLMTLWRNWYVRNELIHGKSAPPTETSQRFIQSYVDLLFQIR 1596

Query: 191  SQPRTHPTTHANNVSNLPLIG------------TWIPPSDNQMKLSCDATWSDCRRQIGI 250
              P+       + V  +PL G             W  P D  MKL+ D ++     + G+
Sbjct: 1597 QAPQADLVKGKHVVRTVPLKGGPKYRVLNNHQPCWERPKDGWMKLNVDGSFDASSGKGGL 1656

Query: 251  GWILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRY-IPKQVVGVHIESDACNVVKL 310
            G ILR S    +    K ++R       E  A  EGL+  I   ++ + +E+D  +VV+L
Sbjct: 1657 GMILRNSAGDIIFTSCKPLERCNNPLESELRACVEGLKLAIHWTLLPIQVETDCASVVQL 1716

Query: 311  LTSNDEDITKISNFISEAKALIEAQNIVSIK 313
            L     D + ++N I EA+ L+  + ++SIK
Sbjct: 1717 LQGIGRDFSVLANIIHEARHLLVGERVISIK 1720

BLAST of Lcy03g005780 vs. ExPASy TrEMBL
Match: A0A803QL79 (Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.4e-17
Identity = 82/312 (26.28%), Postives = 133/312 (42.63%), Query Frame = 0

Query: 11  VAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYRD 70
           VA LI +  +WN   + G F+  D   IL IPLS    +D +IW+  S G ++VK+ Y+ 
Sbjct: 23  VASLITDARQWNLEALHGHFSPPDVDNILTIPLSLFPTDDVLIWHYSSTGCYTVKTGYQF 82

Query: 71  KLESAEHLFWECKAIKGLWYNYFPSTKLICLDGKKGWTTQEYCESMWKGSKDGHLDEQRL 130
             ES +       A    W+  F S KL        W                H+    +
Sbjct: 83  ATESQDTTAPSSSASADGWWQTFWSLKLQTKVRIFAWKAFHDALPTAAVLHYRHIASDSI 142

Query: 131 ------STSLVICWQIWDYRNSIYKRKQQPNLKMLKDRIDTYLEEFNCQGSQPRTHPTTH 190
                    + I W IW  RN+ Y  K+   + +L D    YL++++   +Q R+  T+ 
Sbjct: 143 CPLYLFELFITIMWCIWSERNAEYHGKKTKPVPLLLDYAVKYLKDYH--HAQTRSAATSQ 202

Query: 191 ------------ANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSNDK 250
                       A + S  P    WI P   Q+KL+ DA  +     IG+G +LR SN  
Sbjct: 203 QLLSSSRPVNSTAASFSTTPTQPVWIAPPPGQLKLNTDAAINMSSSIIGLGAVLRDSNGI 262

Query: 251 PLVAGFKCIKRQWRISWLEALAICEGLRYIPKQVVGV-HIESDACNVVKLLTSNDEDITK 304
            + A    IK +++   +EA A+   L+ + +  + V HIE+D+  VV+ L      ++ 
Sbjct: 263 IVAAMATSIKGRFKPEEMEASALSWSLKTLLQLQLPVHHIETDSLMVVQNLKKATTSLSA 322

BLAST of Lcy03g005780 vs. NCBI nr
Match: XP_022154990.1 (uncharacterized protein LOC111022134 isoform X1 [Momordica charantia])

HSP 1 Score: 127.5 bits (319), Expect = 2.2e-25
Identity = 74/221 (33.48%), Postives = 115/221 (52.04%), Query Frame = 0

Query: 68  YRDKLESAEHLFWECKAIKGLWYNYFPSTKLICLDGKKGWTTQEYCESMWKGSKDGHLDE 127
           +R K E+ +H+ WECK IK +W N  P         +  WTT+EY E  W   K G  + 
Sbjct: 130 FRKKEETTQHILWECKVIKDIWINCTPIEANFFYIDRTNWTTKEYWE--WLMDKAGEEER 189

Query: 128 QRLSTSLVICWQIWDYRN-SIYK--RKQQPNLKMLKDR--IDTYLEEFNCQGSQPRTHPT 187
           +R   S++I  QIW+ RN SI+K    +  ++++  DR  I++  ++ N +      HP 
Sbjct: 190 RR---SMIIACQIWEMRNKSIFKGVHSETRDIQLAIDRYIINSAGQDTNLKRKSKDFHPI 249

Query: 188 THANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSNDKPLVAGFKCIK 247
               + +       W PP+ N  KL+ DA W       GIGWILR    + +  G + I+
Sbjct: 250 RRIGDNTR----ARWKPPTSNSWKLNTDAAWRADTNTDGIGWILRDEKGEVIKTGCRIIR 309

Query: 248 RQWRISWLEALAICEGLRYIPKQ-VVGVHIESDACNVVKLL 283
            +  I++LE +AICEGLR I ++    +H+ESD+   + LL
Sbjct: 310 AERNITYLEVMAICEGLRAIRQEHCRPIHLESDSLEAIHLL 341

BLAST of Lcy03g005780 vs. NCBI nr
Match: TXG71894.1 (hypothetical protein EZV62_000473 [Acer yangbiense])

HSP 1 Score: 117.1 bits (292), Expect = 3.0e-22
Identity = 92/332 (27.71%), Postives = 145/332 (43.67%), Query Frame = 0

Query: 11  VAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQFSVKSAYRD 70
           V+ LI++ G+WNE L+R +F  E+A  IL+IPLS  L+ D  +W+ +  G F+VKSAYR 
Sbjct: 44  VSTLIESPGKWNESLIRRNFLPEEAELILSIPLSVYLRRDSFLWHFNKDGTFTVKSAYRV 103

Query: 71  KL----------------------ESAEHLFWECKAIKGLWYN--YFPSTKLICLDGKKG 130
            +                      E+ EH  W CK++K  W +   F     + +D   G
Sbjct: 104 AISAMKRFEAFCSSALCPLCREGPETVEHALWRCKSVKPEWNHCPLFSDLNKLKIDDFLG 163

Query: 131 WTTQEYCESMWKGSKDGHLDEQRLSTSLVICWQIWDYRN-SIYKRKQQPNLKMLKDRIDT 190
                    +W  S     + + +   +   W +W+ RN S+++ K     K   D   T
Sbjct: 164 -------RVIWVASV---ANLENVVNFITTAWLVWNNRNQSLFREK----AKCWGDSW-T 223

Query: 191 YLEEFNCQGSQPRTHPTTHANNVSNLP--LIGTWIPPSDNQMKLSCDATWSDCRRQIGIG 250
               F   G    T      NN S +P  +I  WIPPS   +K++ DA     R +  +G
Sbjct: 224 KATLFLSGGKTIETQ-----NNSSAIPSLVIKNWIPPSFGTIKVNVDAALDVGRNKFSVG 283

Query: 251 WILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRYIPKQ-VVGVHIESDACNVVKLL 310
            ++R S+ + L +       +      EA  I EGL       +  + IESD+ NVV+L 
Sbjct: 284 IVIRDSSGRILKSAALVFNGRTSTDIAEAKVIYEGLLLATSSGLQPLSIESDSLNVVRLC 343

Query: 311 TSNDEDITKISNFISEAKALIEAQNIVSIKYL 315
                    + N I + + L+  +   SI Y+
Sbjct: 344 NGEISTRNDVFNVICDIQFLLSRERKTSISYI 355

BLAST of Lcy03g005780 vs. NCBI nr
Match: XP_024034843.1 (uncharacterized protein LOC112096145 [Citrus clementina])

HSP 1 Score: 116.7 bits (291), Expect = 3.9e-22
Identity = 83/303 (27.39%), Postives = 140/303 (46.20%), Query Frame = 0

Query: 3   HPNIHQ-FTVAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQ 62
           H N+ +   VA  ID+  +W E  +   FT+E A +IL IPL    +ED +IW  D  G 
Sbjct: 39  HQNLTEGAVVADFIDDKNQWKEEKIEQCFTKEVAQKILKIPLPRTPQEDILIWQFDKHGC 98

Query: 63  FSVKSAYR--------DKLESAEHLFWECKAIKGLW--YNYFPSTKLICLDGKKGWTTQE 122
           +SV+S Y+        D  E ++    + KA + +W   +++   KL+          Q+
Sbjct: 99  YSVRSGYQVALKMKFPDNPECSDSSKTQWKAARKVWKLTDFYEDVKLM---------AQQ 158

Query: 123 YCESMWKGSKDGHLDEQRLSTSLVICWQIWDYRNSIYKRKQQPNLKMLKDRIDTYLEEFN 182
              SM +G       ++ L   + +CW IW  RN      +Q   K+   R    LE + 
Sbjct: 159 GILSMLQGLA-SRRKKKELEQIIAVCWAIWYARNRFMYEGKQQEPKLTAARASAILETYR 218

Query: 183 CQGSQPRTHPTTHANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCRRQIGIGWILRQSND 242
               Q     + H  N   +     W PP D + K+  DA       + G+G ++R SN+
Sbjct: 219 RIKIQNGPARSIHHRNSQQI-----WKPPPDGKYKVDVDAAIQMSGPKAGLGVVIRNSNE 278

Query: 243 KPLVAGFKCIKRQWRISWLEALAICEGLRYIPK-QVVGVHIESDACNVVKLLTSNDEDIT 294
           K + A  K +  +  ++ +EA AI  G++   + + + + IESD+  VV+L+ +    +T
Sbjct: 279 KIIAAAVKRVCYKGTVACMEAEAILFGIQVAQQAECLLMIIESDSIEVVELVLNRKGSMT 326

BLAST of Lcy03g005780 vs. NCBI nr
Match: XP_015387358.1 (uncharacterized protein LOC107177672 [Citrus sinensis])

HSP 1 Score: 115.5 bits (288), Expect = 8.6e-22
Identity = 90/338 (26.63%), Postives = 150/338 (44.38%), Query Frame = 0

Query: 3   HPNI-HQFTVAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQ 62
           H N+     VA  ID+  +W E  V   F EE A RIL  PL    +ED +IW+ D  G 
Sbjct: 12  HQNLAENVVVADFIDDKNQWMEEKVVQCFPEEVAQRILRTPLPRTPQEDLMIWHFDKYGC 71

Query: 63  FSVKSAYR--------DKLESAEHLFWECKAI---KGLWYNYFPSTKLI----------- 122
           +SV+S Y+        D  E ++    + K I     +W+   P   +I           
Sbjct: 72  YSVRSGYQVAVRMKFPDNPECSDSSKTQWKPIIYGGKMWWGIQPVKDVIVKVRMSLVLME 131

Query: 123 CLDGKKGW--TTQEYCESMWKGSKDGHLDEQRLSTSLVICWQIWDYRNSIYKRKQQPNLK 182
           C   +K W   +Q    SM +      + ++ +   L ICW IW  RN      +Q   K
Sbjct: 132 CKAARKVWKLLSQHDILSMLQELASRRM-KKEIEQILAICWAIWYARNRFVIEGKQEEPK 191

Query: 183 MLKDRIDTYLEEFNCQGSQPRTHPTTHANNVSNLPLIGTWIPPSDNQMKLSCDATWSDCR 242
           +   R    +E +    +Q     + H  N   +     W PP   + K++ DA      
Sbjct: 192 LTAARASAIVELYKRIKTQNGPARSIHYQNNQQI-----WTPPPQRKYKVNVDAAIQMAG 251

Query: 243 RQIGIGWILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRYIPK-QVVGVHIESDAC 302
            + G+G ++R SN K + A  K +  Q  ++ +EA A+  G++   + + + + IESD+ 
Sbjct: 252 LKAGLGAVVRNSNGKIIAAAVKKVCFQGTVASMEAEAVLFGIQVAQQVEYLPMIIESDST 311

Query: 303 NVVKLLTSNDEDITKISNFISEAKALIEAQNIVSIKYL 315
            VV+L+ S    +T++S  + E K  ++  N  S++Y+
Sbjct: 312 EVVELVWSRKSSLTEVSWTVEEIKQQLQISNASSLQYV 343

BLAST of Lcy03g005780 vs. NCBI nr
Match: XP_015383981.1 (uncharacterized protein LOC107176279 [Citrus sinensis])

HSP 1 Score: 113.2 bits (282), Expect = 4.3e-21
Identity = 88/343 (25.66%), Postives = 146/343 (42.57%), Query Frame = 0

Query: 3   HPNI-HQFTVAQLIDNYGRWNEPLVRGSFTEEDAMRILNIPLSSLLKEDEVIWNLDSKGQ 62
           H N+     VA  ID+  +W E  V   F EE A RIL  PL    +ED +IW+ D  G 
Sbjct: 56  HQNLAENAVVADFIDDKNQWMEEKVVQCFPEEVAQRILRTPLPRTPQEDLMIWHFDKYGC 115

Query: 63  FSVKSAYR----------DKLESAEHLFWECKAIKG-LWYNYFPSTKLI----------- 122
           +SV+S Y+           +   +    W+     G +W+   P   +I           
Sbjct: 116 YSVRSGYQVAVRMKFPENPECSDSSKTQWKPIIYGGKMWWGIQPVKDVIVKVRMSLVLME 175

Query: 123 CLDGKKGWTTQEYCESMWKGSKDGHLD----------EQRLSTSLVICWQIWDYRNSIYK 182
           C   +K W   ++ E M   S+   L           ++ +   L ICW IW  RN    
Sbjct: 176 CKAARKVWKLTDFNEDMKLLSQHDILSMLQELASRRMKKEIEQILAICWAIWYARNRFVI 235

Query: 183 RKQQPNLKMLKDRIDTYLEEFNCQGSQPRTHPTTHANNVSNLPLIGTWIPPSDNQMKLSC 242
             +Q   K+   R    +E +    +Q     + H  N   +     W PP + + K++ 
Sbjct: 236 EGKQEEPKLTAARASAIVESYKRIKTQNGPARSIHYQNNQQI-----WTPPPEGKYKVNV 295

Query: 243 DATWSDCRRQIGIGWILRQSNDKPLVAGFKCIKRQWRISWLEALAICEGLRYIPK-QVVG 302
           DA       + G+G ++R SN K + A  K +  Q   + +EA A+  G++   + + + 
Sbjct: 296 DAAIQMAGLKAGLGAVVRNSNGKIIAAAVKKVCFQGTRASMEAEAVLFGIQVAQQVEYLP 355

Query: 303 VHIESDACNVVKLLTSNDEDITKISNFISEAKALIEAQNIVSI 312
           + IESD+  VV+L+ S    +T++S  + E K  ++  N  S+
Sbjct: 356 MIIESDSTEVVELVWSRKSSLTEVSWTVEEIKQQLQISNASSL 393

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1DL641.1e-2533.48uncharacterized protein LOC111022134 isoform X1 OS=Momordica charantia OX=3673 G... [more]
A0A5C7IST21.4e-2227.71RNase H domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_000473 ... [more]
A0A803QGM96.6e-2025.90Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
B8BN969.6e-1925.38Reverse transcriptase domain-containing protein OS=Oryza sativa subsp. indica OX... [more]
A0A803QL791.4e-1726.28Uncharacterized protein OS=Cannabis sativa OX=3483 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
XP_022154990.12.2e-2533.48uncharacterized protein LOC111022134 isoform X1 [Momordica charantia][more]
TXG71894.13.0e-2227.71hypothetical protein EZV62_000473 [Acer yangbiense][more]
XP_024034843.13.9e-2227.39uncharacterized protein LOC112096145 [Citrus clementina][more]
XP_015387358.18.6e-2226.63uncharacterized protein LOC107177672 [Citrus sinensis][more]
XP_015383981.14.3e-2125.66uncharacterized protein LOC107176279 [Citrus sinensis][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002156Ribonuclease H domainPFAMPF13456RVT_3coord: 209..314
e-value: 2.1E-9
score: 37.3
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 203..317
e-value: 1.2E-5
score: 27.4
IPR044730Ribonuclease H-like domain, plant typeCDDcd06222RNase_H_likecoord: 207..315
e-value: 3.98467E-9
score: 51.9312
IPR012337Ribonuclease H-like superfamilySUPERFAMILY53098Ribonuclease H-likecoord: 204..311

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g005780.1Lcy03g005780.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0004523 RNA-DNA hybrid ribonuclease activity