Lcy03g005290 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g005290
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrovirus-related Pol polyprotein from transposon TNT 1-94
Location	Chr03: 28991154 .. 28991591 (-)
RNA-Seq Expression	Lcy03g005290
Synteny	Lcy03g005290

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTACAACTCGATGATCTCAGAAGTGGCGACTCAAGTAATGGACTGTGAAAATGCAAAGGACCTCTGGGAAGCTATTCAAGGACTGTTTGGTGTACAATCGAGAGCCGAAGAGGACTACTTACGCCAGGTATTCCAACAATCTCGTAAAAATAGCTTAAAAATGGCTGATTATTTGCGTGTGATGAAAAGCCATGCAGATAACCTAGGTCAGGCTAAGAGTCATGTATCTACAAGAAATCTTGTTTCACAAGTGTTGCTAGGGCTTGACGAGGAATATAATTCTGTGGTAGCCATGATACAAGGACGGATGGATATCTCTTGGTCTGAGATGCAAGCGGAATTGTTAGTGTTCGAAAAACGTTTGGAGCTACAAAACTCACAGAAGAGTGTCAATTCATTTAGCCACAATGCCTTAGTGAATATGGCTAACAGTTGA

mRNA sequence

ATGTACAACTCGATGATCTCAGAAGTGGCGACTCAAGTAATGGACTGTGAAAATGCAAAGGACCTCTGGGAAGCTATTCAAGGACTGTTTGGTGTACAATCGAGAGCCGAAGAGGACTACTTACGCCAGGTATTCCAACAATCTCGTAAAAATAGCTTAAAAATGGCTGATTATTTGCGTGTGATGAAAAGCCATGCAGATAACCTAGGTCAGGCTAAGAGTCATGTATCTACAAGAAATCTTGTTTCACAAGTGTTGCTAGGGCTTGACGAGGAATATAATTCTGTGGTAGCCATGATACAAGGACGGATGGATATCTCTTGGTCTGAGATGCAAGCGGAATTGTTAGTGTTCGAAAAACGTTTGGAGCTACAAAACTCACAGAAGAGTGTCAATTCATTTAGCCACAATGCCTTAGTGAATATGGCTAACAGTTGA

Coding sequence (CDS)

ATGTACAACTCGATGATCTCAGAAGTGGCGACTCAAGTAATGGACTGTGAAAATGCAAAGGACCTCTGGGAAGCTATTCAAGGACTGTTTGGTGTACAATCGAGAGCCGAAGAGGACTACTTACGCCAGGTATTCCAACAATCTCGTAAAAATAGCTTAAAAATGGCTGATTATTTGCGTGTGATGAAAAGCCATGCAGATAACCTAGGTCAGGCTAAGAGTCATGTATCTACAAGAAATCTTGTTTCACAAGTGTTGCTAGGGCTTGACGAGGAATATAATTCTGTGGTAGCCATGATACAAGGACGGATGGATATCTCTTGGTCTGAGATGCAAGCGGAATTGTTAGTGTTCGAAAAACGTTTGGAGCTACAAAACTCACAGAAGAGTGTCAATTCATTTAGCCACAATGCCTTAGTGAATATGGCTAACAGTTGA

Protein sequence

MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLRVMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEKRLELQNSQKSVNSFSHNALVNMANS

Homology

[Close]

BLAST of Lcy03g005290 vs. ExPASy TrEMBL
Match: A0A6J1D5J0 (uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017501 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.8e-39
Identity = 96/137 (70.07%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM  EVATQVM  ENA DLW AIQ LFGVQS+AEEDYLRQVFQQ+RK SLKM D+LR
Sbjct: 49  LYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLR 108

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           VMKSHADNLGQA S V TR+L+SQVLLGLDEEYN VVA IQG+  ISW EMQAE      
Sbjct: 109 VMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSG 168

Query: 121 RLELQNSQKSVNSFSHN 138
             + QN Q S   F++N
Sbjct: 169 GNQRQN-QNSQPPFNNN 184

[Close]

BLAST of Lcy03g005290 vs. ExPASy TrEMBL
Match: A0A0A0LXB7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 6.2e-39
Identity = 84/145 (57.93%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNS+  EV  Q++   NAKD+WEA    FGV+SRAEED+LRQ FQ +RK +  M DYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           +MK++ADNLGQA+S +  R L+SQVLLGLDE YN V+ +IQG+ +ISW +MQ++LL+FEK
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

Query: 121 RLELQNSQKSVNSFSHNALVNMANS 146
           RL+ QNSQK++ +   NA +NMA S
Sbjct: 142 RLKHQNSQKNIGNIVQNATINMAQS 166

[Close]

BLAST of Lcy03g005290 vs. ExPASy TrEMBL
Match: A0A6J1DCW4 (uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019598 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.9e-38
Identity = 84/130 (64.62%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM ++VA QVM    +++LW A+Q LFGVQSRAE DYL+QVFQQ+ K SL+M +YL+
Sbjct: 114 LYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLK 173

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           +MKSHADNL  A S VS R+LVSQVL GLDEEYN +V  +QG++++SWSEM AELL +EK
Sbjct: 174 LMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEK 233

Query: 121 RLELQNSQKS 131
           RLE QNS KS
Sbjct: 234 RLEYQNSLKS 243

[Close]

BLAST of Lcy03g005290 vs. ExPASy TrEMBL
Match: A0A5D3E3L7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001590 PE=4 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 1.3e-33
Identity = 77/124 (62.10%), Postives = 97/124 (78.23%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM+ +VA Q+M    AKDLWEAIQ LFG++SRAEE +LR  FQ +R+ + KM DYLR
Sbjct: 83  IYNSMVPDVALQLMGFNTAKDLWEAIQNLFGIKSRAEEYFLRHTFQTTREGNYKMEDYLR 142

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           +MK +ADNLGQA S V  R L+SQVLLGLDE YN V A+IQG+ DISW +MQ+ELL+FE 
Sbjct: 143 IMKINADNLGQAGSPVPHRYLISQVLLGLDEVYNPVTAVIQGKPDISWLDMQSELLIFEN 202

Query: 121 RLEL 125
            +E+
Sbjct: 203 LVEI 206

[Close]

BLAST of Lcy03g005290 vs. ExPASy TrEMBL
Match: A0A5A7SIT7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold19G00360 PE=4 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 3.9e-33
Identity = 80/146 (54.79%), Postives = 106/146 (72.60%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM  +VA Q+M   N +DLW+A Q  FGVQSRAEED+LRQ+ Q +RK + KM +YL 
Sbjct: 119 LYNSMTPDVAIQLMGFTNVEDLWDATQDFFGVQSRAEEDFLRQMLQTTRKGNTKMEEYLL 178

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           VMK++ DNLGQ  S V  R L+SQVLLGLDE YN V+ +IQG+ DISW +MQ++LL+FEK
Sbjct: 179 VMKTNVDNLGQVGSPVPRRALISQVLLGLDEVYNLVIVVIQGKPDISWLDMQSKLLIFEK 238

Query: 121 RLELQNSQ---KSVNSFSHNALVNMA 144
            L+ QN+Q   K   + + +  +NMA
Sbjct: 239 ILKHQNTQKKKKKKGNITQSPALNMA 264

[Close]

BLAST of Lcy03g005290 vs. NCBI nr
Match: XP_038905164.1 (uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM  EVA QVM CE AKDLW +I  LFGVQSR EEDYLR VFQ +RK +LKM +YL+
Sbjct: 60  LYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQ 119

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
            MK + DNL QA S +  R LVSQVLLGLDEEYN++VAMIQGR+D+SW +MQ+ELL++E+
Sbjct: 120 TMKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYER 179

Query: 121 RLELQNSQKSVNSFSH--NALVNMANS 146
           RLE Q++QK+   F+   NA VNM N+
Sbjct: 180 RLEHQSNQKTTVGFNQISNASVNMTNT 206

[Close]

BLAST of Lcy03g005290 vs. NCBI nr
Match: XP_038905161.1 (uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida])

HSP 1 Score: 175.3 bits (443), Expect = 4.0e-40
Identity = 93/147 (63.27%), Postives = 115/147 (78.23%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM  EVA QVM CE AKDLW +I  LFGVQSR EEDYLR VFQ +RK +LKM +YL+
Sbjct: 60  LYNSMTPEVAIQVMGCECAKDLWTSIPQLFGVQSRVEEDYLRHVFQTTRKGNLKMEEYLQ 119

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
            MK + DNL QA S +  R LVSQVLLGLDEEYN++VAMIQGR+D+SW +MQ+ELL++E+
Sbjct: 120 TMKMNTDNLEQAGSPMPPRTLVSQVLLGLDEEYNAIVAMIQGRVDMSWLDMQSELLLYER 179

Query: 121 RLELQNSQKSVNSFSH--NALVNMANS 146
           RLE Q++QK+   F+   NA VNM N+
Sbjct: 180 RLEHQSNQKTTVGFNQISNASVNMTNT 206

[Close]

BLAST of Lcy03g005290 vs. NCBI nr
Match: XP_022148963.1 (uncharacterized protein LOC111017501 [Momordica charantia])

HSP 1 Score: 171.4 bits (433), Expect = 5.7e-39
Identity = 96/137 (70.07%), Postives = 106/137 (77.37%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM  EVATQVM  ENA DLW AIQ LFGVQS+AEEDYLRQVFQQ+RK SLKM D+LR
Sbjct: 49  LYNSMTPEVATQVMGYENACDLWAAIQELFGVQSQAEEDYLRQVFQQTRKGSLKMTDFLR 108

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           VMKSHADNLGQA S V TR+L+SQVLLGLDEEYN VVA IQG+  ISW EMQAE      
Sbjct: 109 VMKSHADNLGQAGSPVPTRSLISQVLLGLDEEYNPVVATIQGKRGISWPEMQAEFRSVSG 168

Query: 121 RLELQNSQKSVNSFSHN 138
             + QN Q S   F++N
Sbjct: 169 GNQRQN-QNSQPPFNNN 184

[Close]

BLAST of Lcy03g005290 vs. NCBI nr
Match: KGN65684.1 (hypothetical protein Csa_019689 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-38
Identity = 84/145 (57.93%), Postives = 112/145 (77.24%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNS+  EV  Q++   NAKD+WEA    FGV+SRAEED+LRQ FQ +RK +  M DYLR
Sbjct: 22  LYNSVTPEVVVQLIGFTNAKDMWEATHDFFGVRSRAEEDFLRQTFQTTRKGNSNMEDYLR 81

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           +MK++ADNLGQA+S +  R L+SQVLLGLDE YN V+ +IQG+ +ISW +MQ++LL+FEK
Sbjct: 82  IMKTNADNLGQAESPIPRRALISQVLLGLDEVYNPVIVVIQGKPEISWLDMQSKLLIFEK 141

Query: 121 RLELQNSQKSVNSFSHNALVNMANS 146
           RL+ QNSQK++ +   NA +NMA S
Sbjct: 142 RLKHQNSQKNIGNIVQNATINMAQS 166

[Close]

BLAST of Lcy03g005290 vs. NCBI nr
Match: XP_022151683.1 (uncharacterized protein LOC111019598 [Momordica charantia])

HSP 1 Score: 166.4 bits (420), Expect = 1.8e-37
Identity = 84/130 (64.62%), Postives = 105/130 (80.77%), Query Frame = 0


Query: 1   MYNSMISEVATQVMDCENAKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLR 60
           +YNSM ++VA QVM    +++LW A+Q LFGVQSRAE DYL+QVFQQ+ K SL+M +YL+
Sbjct: 114 LYNSMAADVAMQVMGFSTSRELWTAVQELFGVQSRAEVDYLKQVFQQTCKGSLQMIEYLK 173

Query: 61  VMKSHADNLGQAKSHVSTRNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 120
           +MKSHADNL  A S VS R+LVSQVL GLDEEYN +V  +QG++++SWSEM AELL +EK
Sbjct: 174 LMKSHADNLALAGSSVSVRDLVSQVLTGLDEEYNPIVVAVQGKVNLSWSEMHAELLTYEK 233

Query: 121 RLELQNSQKS 131
           RLE QNS KS
Sbjct: 234 RLEYQNSLKS 243

[Close]

BLAST of Lcy03g005290 vs. TAIR 10
Match: AT5G48050.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G34070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 50.1 bits (118), Expect = 1.8e-06
Identity = 38/127 (29.92%), Postives = 68/127 (53.54%), Query Frame = 0


Query: 19  AKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLRVMKSHADNLGQAKSHVST 78
           A+DLW +++ LF     A         + +  + L + +Y + +KS +D L    S +S 
Sbjct: 97  ARDLWLSLENLFRDNKEARALQFENELRTTTIDDLSVHEYCQKLKSLSDLLTNVDSPISD 156

Query: 79  RNLVSQVLLGLDEEYNSVVAMIQGRMDI-SWSEMQAELLVFEKRLELQNSQKSVNSFSHN 138
           R LV  +L GL E+Y+ ++ +I+ +    S++E ++ LL+ E RL    S KS +S SH 
Sbjct: 157 RVLVMHLLNGLTEKYDYILNVIKHKSPFPSFTEARSMLLMEESRL----SNKSKSSLSHT 216

Query: 139 ALVNMAN 145
              +++N
Sbjct: 217 NHPSLSN 219

[Close]

BLAST of Lcy03g005290 vs. TAIR 10
Match: AT1G34070.1 (CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G48050.1); Has 648 Blast hits to 647 proteins in 29 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 25; Plants - 607; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.7 bits (99), Expect = 2.9e-04
Identity = 29/102 (28.43%), Postives = 51/102 (50.00%), Query Frame = 0


Query: 19  AKDLWEAIQGLFGVQSRAEEDYLRQVFQQSRKNSLKMADYLRVMKSHADNLGQAKSHVST 78
           ++D+W  I+  F     A    L    +      +++ADY R MK  AD+L      V+ 
Sbjct: 95  SRDIWLRIKNQFRNNKDARALRLDSELRTKDIGDMRVADYYRKMKKLADSLRNVDVPVTD 154

Query: 79  RNLVSQVLLGLDEEYNSVVAMIQGRMDISWSEMQAELLVFEK 121
           RNLV  VL GL+ ++++++ +I+ R      +  A +L  E+
Sbjct: 155 RNLVMYVLNGLNPKFDNIINVIKHRQPFPSFDDAATMLQEEE 196

The following BLAST results are available for this feature:

BLAST of Lcy03g005290 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g005290 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1D5J0	2.8e-39	70.07	uncharacterized protein LOC111017501 OS=Momordica charantia OX=3673 GN=LOC111017...	[more]
A0A0A0LXB7	6.2e-39	57.93	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G496800 PE=4 SV=1	[more]
A0A6J1DCW4	8.9e-38	64.62	uncharacterized protein LOC111019598 OS=Momordica charantia OX=3673 GN=LOC111019...	[more]
A0A5D3E3L7	1.3e-33	62.10	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SIT7	3.9e-33	54.79	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Lcy03g005290 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038905164.1	4.0e-40	63.27	uncharacterized protein LOC120091275 isoform X4 [Benincasa hispida]	[more]
XP_038905161.1	4.0e-40	63.27	uncharacterized protein LOC120091275 isoform X1 [Benincasa hispida]	[more]
XP_022148963.1	5.7e-39	70.07	uncharacterized protein LOC111017501 [Momordica charantia]	[more]
KGN65684.1	1.3e-38	57.93	hypothetical protein Csa_019689 [Cucumis sativus]	[more]
XP_022151683.1	1.8e-37	64.62	uncharacterized protein LOC111019598 [Momordica charantia]	[more]

BLAST of Lcy03g005290 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48050.1	1.8e-06	29.92	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]
AT1G34070.1	2.9e-04	28.43	CONTAINS InterPro DOMAIN/s: Retrotransposon gag protein (InterPro:IPR005162); BE...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 2..122 e-value: 3.0E-12 score: 46.5
None	No IPR available	PANTHER	PTHR34222	FAMILY NOT NAMED	coord: 3..141
None	No IPR available	PANTHER	PTHR34222:SF48	SUBFAMILY NOT NAMED	coord: 3..141

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g005290.1	Lcy03g005290.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
molecular_function	GO:0003676	nucleic acid binding