Lcy03g004930 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g004930
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionTy3-gypsy retrotransposon protein
LocationChr03: 25425944 .. 25426567 (+)
RNA-Seq ExpressionLcy03g004930
SyntenyLcy03g004930
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCCACTCAAAGTTTCCTCTTGTATTCCAAACCTTATTCAAAGAGGATTGACAATCTGAGAATGCCCACTGGGTATCAACCTCCCAAGTTCCAACAATTTGACAGAAAGGACAATTCAAAGCAACACATCGCCCACTTCGTTGAAACTTGCGAGAACGTTGGTACTAGGGGAGATTTGCTTGTTAAGCAATTTGTTCGAACAATGAAAGGAAACATGTTCGATTGGTACACTAACCTGGAGCCTGAGATAATTAACAGCTGGGAGCAGTTTGAAAGAGAGTTCCTAAATCGCTTCTACAGTATGAGGAAAACAGTTAGTATGATGGAACTCACGAACACAAAGCAATAGAAGGGTGAGCTAGTCATTGACTACATCAACCGTTAGAGAGCCTTGAGTCTTTATTGTAAAGATAGACTCATTAAAGTGTCATTTGTCGAGATGTGCATCCAAGGCATGCACTGGGAACTTCTTTACATCTTGCAGGGGATAAAACCTCGTATCTTTGAAGAATTGGTGACTCGCGCTCATGATATGAAGTTGAGCATCGCTAGAAAAGATAAAAGAAAAGAAAGAAGTCAAAGGCACTGA

mRNA sequence

ATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCCACTCAAAGTTTCCTCTTGTATTCCAAACCTTATTCAAAGAGGATTGACAATCTGAGAATGCCCACTGGGTATCAACCTCCCAAGTTCCAACAATTTGACAGAAAGGACAATTCAAAGCAACACATCGCCCACTTCGTTGAAACTTGCGAGAACGTTGGTACTAGGGGAGATTTGCTTGTTAAGCAATTTGTTCGAACAATGAAAGGAAACATGTTCGATTGGTACACTAACCTGGAGCCTGAGATAATTAACAGCTGGGAGCAGTTTGAAAGAGAGTTCCTAAATCGCTTCTACAGTATGAGGAAAACAGGGATAAAACCTCGTATCTTTGAAGAATTGGTGACTCGCGCTCATGATATGAAGTTGAGCATCGCTAGAAAAGATAAAAGAAAAGAAAGAAGTCAAAGGCACTGA

Coding sequence (CDS)

ATGATCATGAATTCCATTAGGGCTCAATATGGTGGACCCACTCAAAGTTTCCTCTTGTATTCCAAACCTTATTCAAAGAGGATTGACAATCTGAGAATGCCCACTGGGTATCAACCTCCCAAGTTCCAACAATTTGACAGAAAGGACAATTCAAAGCAACACATCGCCCACTTCGTTGAAACTTGCGAGAACGTTGGTACTAGGGGAGATTTGCTTGTTAAGCAATTTGTTCGAACAATGAAAGGAAACATGTTCGATTGGTACACTAACCTGGAGCCTGAGATAATTAACAGCTGGGAGCAGTTTGAAAGAGAGTTCCTAAATCGCTTCTACAGTATGAGGAAAACAGGGATAAAACCTCGTATCTTTGAAGAATTGGTGACTCGCGCTCATGATATGAAGTTGAGCATCGCTAGAAAAGATAAAAGAAAAGAAAGAAGTCAAAGGCACTGA

Protein sequence

MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVETCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKPRIFEELVTRAHDMKLSIARKDKRKERSQRH
Homology
[Close]
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match: A0A5A7VAV4 (Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00190 PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 1.0e-57
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI +SI+ QYGGP Q+F LYSKPY+KRIDNLRMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCE  GTRGDLLVKQFVRT+KGN FDWY +LEPE IN+WEQ ER+FLNRFYS+R+ GIKP
Sbjct: 230 TCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESINNWEQLERDFLNRFYSIRRIGIKP 289

Query: 121 RIFEELVTRAHDMKLSIARKDKR-----KERSQRH 151
           R FEEL TRAHDM+LSIA +  +     K RS ++
Sbjct: 290 RTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 324

[Close]
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match: A0A5A7VFV7 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold344G00150 PE=4 SV=1)

HSP 1 Score: 224.6 bits (571), Expect = 2.8e-55
Identity = 104/140 (74.29%), Postives = 120/140 (85.71%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI+NSIRAQYGG  Q+  +YSKPY+KRIDNLRM  GYQPPKFQQFD K N KQHIAHFVE
Sbjct: 145 MIVNSIRAQYGGSPQTTFMYSKPYTKRIDNLRMSLGYQPPKFQQFDGKGNPKQHIAHFVE 204

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCEN  +RGD LV+QFVR++KGN+F+WYT LEPE+I++WEQ E+EFLNRFYS R TGIKP
Sbjct: 205 TCENARSRGDQLVRQFVRSLKGNVFEWYTGLEPEVIDNWEQLEKEFLNRFYSTRCTGIKP 264

Query: 121 RIFEELVTRAHDMKLSIARK 141
           R FEEL T AHDM+LSIA +
Sbjct: 265 RTFEELATSAHDMELSIANR 284

[Close]
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match: A0A5D3BRH6 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold18G00640 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.3e-55
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSI+ QYGGP ++F LYSKPY+KRIDN+RMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRK----- 120
           TCE VGTRGDLLVKQFVRT+KGN FDWYT+LEPE I+SW+Q ER+FLNRFYS R+     
Sbjct: 230 TCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTRRIVSMI 289

Query: 121 ---------------TGIKPRIFEELVTRAHDMKLSIARK 141
                           GIKPR FEEL TRAHDM+LSIA +
Sbjct: 290 ELTATKQRKGLLYILQGIKPRTFEELATRAHDMELSIANR 329

[Close]
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match: A0A5A7UZD5 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold22G004860 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.3e-55
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSI+ QYGGP ++F LYSKPY+KRIDN+RMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRK----- 120
           TCE VGTRGDLLVKQFVRT+KGN FDWYT+LEPE I+SW+Q ER+FLNRFYS R+     
Sbjct: 230 TCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTRRIVSMI 289

Query: 121 ---------------TGIKPRIFEELVTRAHDMKLSIARK 141
                           GIKPR FEEL TRAHDM+LSIA +
Sbjct: 290 ELTATKQRKGLLYILQGIKPRTFEELATRAHDMELSIANR 329

[Close]
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match: A0A5A7V8J3 (Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold616G00640 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSIRAQYG P Q+  +YSKPY+KRIDNLRMP GYQPPKFQQFD K N KQHI +FV+
Sbjct: 1   MIANSIRAQYGRPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIVYFVK 60

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCENVG+RGD LV+QFVR++K N F+WYT+L+PE+I+SWEQ E EFLNRFYS R+TGIKP
Sbjct: 61  TCENVGSRGDQLVRQFVRSLKRNAFEWYTDLDPEVIDSWEQLEIEFLNRFYSTRRTGIKP 120

Query: 121 RIFEELVTRAHDMKLSIAR---KDKRKER 147
             FEEL TR HDM+LSIA    KD  KER
Sbjct: 121 PTFEELATRTHDMELSIANRGAKDLFKER 149

[Close]
BLAST of Lcy03g004930 vs. NCBI nr
Match: KAA0065303.1 (retrotransposon gag protein [Cucumis melo var. makuwa])

HSP 1 Score: 232.6 bits (592), Expect = 2.2e-57
Identity = 110/155 (70.97%), Postives = 128/155 (82.58%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI +SI+ QYGGP Q+F LYSKPY+KRIDNLRMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIASSIKTQYGGPAQTFSLYSKPYTKRIDNLRMPNGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCE  GTRGDLLVKQFVRT+KGN FDWY +LEPE IN+WEQ ER+FLNRFYS+R+ GIKP
Sbjct: 230 TCETAGTRGDLLVKQFVRTLKGNAFDWYIDLEPESINNWEQLERDFLNRFYSIRRIGIKP 289

Query: 121 RIFEELVTRAHDMKLSIARKDKR-----KERSQRH 151
           R FEEL TRAHDM+LSIA +  +     K RS ++
Sbjct: 290 RTFEELATRAHDMELSIANRGAKDFLIPKSRSDKN 324

[Close]
BLAST of Lcy03g004930 vs. NCBI nr
Match: KAA0065967.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30262.1 ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 224.6 bits (571), Expect = 5.9e-55
Identity = 104/140 (74.29%), Postives = 120/140 (85.71%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI+NSIRAQYGG  Q+  +YSKPY+KRIDNLRM  GYQPPKFQQFD K N KQHIAHFVE
Sbjct: 145 MIVNSIRAQYGGSPQTTFMYSKPYTKRIDNLRMSLGYQPPKFQQFDGKGNPKQHIAHFVE 204

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCEN  +RGD LV+QFVR++KGN+F+WYT LEPE+I++WEQ E+EFLNRFYS R TGIKP
Sbjct: 205 TCENARSRGDQLVRQFVRSLKGNVFEWYTGLEPEVIDNWEQLEKEFLNRFYSTRCTGIKP 264

Query: 121 RIFEELVTRAHDMKLSIARK 141
           R FEEL T AHDM+LSIA +
Sbjct: 265 RTFEELATSAHDMELSIANR 284

[Close]
BLAST of Lcy03g004930 vs. NCBI nr
Match: TYK02263.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSI+ QYGGP ++F LYSKPY+KRIDN+RMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRK----- 120
           TCE VGTRGDLLVKQFVRT+KGN FDWYT+LEPE I+SW+Q ER+FLNRFYS R+     
Sbjct: 230 TCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTRRIVSMI 289

Query: 121 ---------------TGIKPRIFEELVTRAHDMKLSIARK 141
                           GIKPR FEEL TRAHDM+LSIA +
Sbjct: 290 ELTATKQRKGLLYILQGIKPRTFEELATRAHDMELSIANR 329

[Close]
BLAST of Lcy03g004930 vs. NCBI nr
Match: KAA0060608.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 107/160 (66.88%), Postives = 123/160 (76.88%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSI+ QYGGP ++F LYSKPY+KRIDN+RMP GYQPPKFQQFD K N KQH+A+F+E
Sbjct: 170 MIANSIKTQYGGPAETFSLYSKPYTKRIDNMRMPHGYQPPKFQQFDGKGNPKQHVAYFIE 229

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRK----- 120
           TCE VGTRGDLLVKQFVRT+KGN FDWYT+LEPE I+SW+Q ER+FLNRFYS R+     
Sbjct: 230 TCETVGTRGDLLVKQFVRTLKGNAFDWYTDLEPESIDSWKQLERDFLNRFYSTRRIVSMI 289

Query: 121 ---------------TGIKPRIFEELVTRAHDMKLSIARK 141
                           GIKPR FEEL TRAHDM+LSIA +
Sbjct: 290 ELTATKQRKGLLYILQGIKPRTFEELATRAHDMELSIANR 329

[Close]
BLAST of Lcy03g004930 vs. NCBI nr
Match: KAA0063928.1 (ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 6.5e-54
Identity = 107/149 (71.81%), Postives = 123/149 (82.55%), Query Frame = 0 

Query: 1   MIMNSIRAQYGGPTQSFLLYSKPYSKRIDNLRMPTGYQPPKFQQFDRKDNSKQHIAHFVE 60
           MI NSIRAQYG P Q+  +YSKPY+KRIDNLRMP GYQPPKFQQFD K N KQHI +FV+
Sbjct: 1   MIANSIRAQYGRPPQTSFMYSKPYTKRIDNLRMPLGYQPPKFQQFDGKGNPKQHIVYFVK 60

Query: 61  TCENVGTRGDLLVKQFVRTMKGNMFDWYTNLEPEIINSWEQFEREFLNRFYSMRKTGIKP 120
           TCENVG+RGD LV+QFVR++K N F+WYT+L+PE+I+SWEQ E EFLNRFYS R+TGIKP
Sbjct: 61  TCENVGSRGDQLVRQFVRSLKRNAFEWYTDLDPEVIDSWEQLEIEFLNRFYSTRRTGIKP 120

Query: 121 RIFEELVTRAHDMKLSIAR---KDKRKER 147
             FEEL TR HDM+LSIA    KD  KER
Sbjct: 121 PTFEELATRTHDMELSIANRGAKDLFKER 149

The following BLAST results are available for this feature:
BLAST of Lcy03g004930 vs.
Match NameE-valueIdentityDescription
BLAST of Lcy03g004930 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VAV41.0e-5770.97Retrotransposon gag protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaf... [more]
A0A5A7VFV72.8e-5574.29Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5D3BRH68.3e-5566.88Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E567... [more]
A0A5A7UZD58.3e-5566.88Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
A0A5A7V8J33.1e-5471.81Ty3-gypsy retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of Lcy03g004930 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065303.12.2e-5770.97retrotransposon gag protein [Cucumis melo var. makuwa][more]
KAA0065967.15.9e-5574.29ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa] >TYK30262.1 ty3-gyp... [more]
TYK02263.11.7e-5466.88ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0060608.11.7e-5466.88ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0063928.16.5e-5471.81ty3-gypsy retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of Lcy03g004930 vs. NCBI nr
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g004930.1Lcy03g004930.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006259 DNA metabolic process
molecular_function GO:0140640 catalytic activity, acting on a nucleic acid
molecular_function GO:0003676 nucleic acid binding