Lcy03g004380 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g004380
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	AAA-ATPase
Location	Chr03: 21087884 .. 21088123 (-)
RNA-Seq Expression	Lcy03g004380
Synteny	Lcy03g004380

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGGAGTACTGGTCCTCCCTCGCCTCCCTCATCGGTGTTCTCGCCTTCTGCCAAACCCTCCTCAAGGAAATCTTCCCGCTGGAGCTCCGCTTCACCGTCCTCAAGCTCTTCAACCAACTCTTCCGCTGCTTCTCCTCCTATGTCTACTTCAACATCACCGAGATCGACGGCGTCAACACCAACGAGCTCTACAACGCCGTCTCAGCTCCTCCGTCTCCATCTCCGACAATCGCTTGA

mRNA sequence

ATGAAGGAGTACTGGTCCTCCCTCGCCTCCCTCATCGGTGTTCTCGCCTTCTGCCAAACCCTCCTCAAGGAAATCTTCCCGCTGGAGCTCCGCTTCACCGTCCTCAAGCTCTTCAACCAACTCTTCCGCTGCTTCTCCTCCTATGTCTACTTCAACATCACCGAGATCGACGGCGTCAACACCAACGAGCTCTACAACGCCGTCTCAGCTCCTCCGTCTCCATCTCCGACAATCGCTTGA

Coding sequence (CDS)

ATGAAGGAGTACTGGTCCTCCCTCGCCTCCCTCATCGGTGTTCTCGCCTTCTGCCAAACCCTCCTCAAGGAAATCTTCCCGCTGGAGCTCCGCTTCACCGTCCTCAAGCTCTTCAACCAACTCTTCCGCTGCTTCTCCTCCTATGTCTACTTCAACATCACCGAGATCGACGGCGTCAACACCAACGAGCTCTACAACGCCGTCTCAGCTCCTCCGTCTCCATCTCCGACAATCGCTTGA

Protein sequence

MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVNTNELYNAVSAPPSPSPTIA

Homology

[Close]

BLAST of Lcy03g004380 vs. ExPASy Swiss-Prot
Match: Q9FKM3 (AAA-ATPase At5g57480 OS=Arabidopsis thaliana OX=3702 GN=At5g57480 PE=3 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 5.0e-24
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYW+SLASL+GVLAFCQ+L++ IFP ELRF  LK FN++F  FSSY YF+ITEIDGVN
Sbjct: 1  MKEYWTSLASLLGVLAFCQSLMQSIFPPELRFAFLKFFNRIFHVFSSYCYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +IA
Sbjct: 61 TNELYNAVQLYLSSSVSIA 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy Swiss-Prot
Match: Q8RY66 (AAA-ATPase At4g25835 OS=Arabidopsis thaliana OX=3702 GN=At4g25835 PE=2 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.2e-23
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYW+SLASL+GVLAFCQ+L+  +FP ELRF + KLFN+ F+ FS++ YF+ITEIDGVN
Sbjct: 1  MKEYWTSLASLLGVLAFCQSLMNSVFPPELRFAISKLFNKFFKLFSTFCYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +IA
Sbjct: 61 TNELYNAVQLYLSSSVSIA 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy Swiss-Prot
Match: F4JPK8 (AAA-ATPase At4g30250 OS=Arabidopsis thaliana OX=3702 GN=At4g30250 PE=3 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 9.1e-18
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          M +YW+++ASL+G+LAFCQT+++ +FP ELR   L    ++   FSS++YF+ITEIDGVN
Sbjct: 1  MSDYWTTMASLLGMLAFCQTIVQLVFPPELRLAFLHFLTRIRHVFSSHIYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTI 79
          TNELYNAV    S S T+
Sbjct: 61 TNELYNAVQLYLSSSVTV 78

[Close]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL
Match: A0A5D3CKZ7 (AAA-ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00650 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL
Match: A0A5A7UT03 (AAA-ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006210 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL
Match: A0A0A0LX94 (AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423100 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQAIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL
Match: A0A1S3CPC3 (AAA-ATPase At5g57480-like OS=Cucumis melo OX=3656 GN=LOC103503281 PE=3 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 2.8e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL
Match: A0A314UKY7 (AAA-ATPase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27306 PE=4 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.0e-24
Identity = 60/82 (73.17%), Postives = 69/82 (84.15%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYW+SLASL+GVLAFCQ +L+ +FP ELRF  LKLFN++F  FSSY YF+ITEIDGVN
Sbjct: 1  MKEYWTSLASLLGVLAFCQGILQTVFPPELRFAFLKLFNKIFHWFSSYYYFDITEIDGVN 60

Query: 61 TNELYNAVS---APPSPSPTIA 80
          TNELYNAV    APPSPSP +A
Sbjct: 61 TNELYNAVQLYLAPPSPSPAVA 82

[Close]

BLAST of Lcy03g004380 vs. NCBI nr
Match: XP_038878733.1 (AAA-ATPase At5g57480 [Benincasa hispida])

HSP 1 Score: 124.4 bits (311), Expect = 4.4e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  LKLFNQ+FRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQAIFPPELRFAALKLFNQIFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. NCBI nr
Match: XP_008465640.1 (PREDICTED: AAA-ATPase At5g57480-like [Cucumis melo])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. NCBI nr
Match: XP_004146314.3 (AAA-ATPase At5g57480 [Cucumis sativus] >KGN65452.1 hypothetical protein Csa_019636 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQAIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. NCBI nr
Match: KAA0058288.1 (AAA-ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. NCBI nr
Match: TYK11844.1 (AAA-ATPase [Cucumis melo var. makuwa])

HSP 1 Score: 124.0 bits (310), Expect = 5.7e-25
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYWSSLASL+GVLAFCQTLL+ IFP ELRF  +KLFNQLFRCFSSYVYF+ITEIDGVN
Sbjct: 1  MKEYWSSLASLLGVLAFCQTLLQTIFPPELRFAAVKLFNQLFRCFSSYVYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +I+
Sbjct: 61 TNELYNAVQLYLSSSVSIS 79

[Close]

BLAST of Lcy03g004380 vs. TAIR 10
Match: AT5G57480.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 111.3 bits (277), Expect = 3.6e-25
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYW+SLASL+GVLAFCQ+L++ IFP ELRF  LK FN++F  FSSY YF+ITEIDGVN
Sbjct: 1  MKEYWTSLASLLGVLAFCQSLMQSIFPPELRFAFLKFFNRIFHVFSSYCYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +IA
Sbjct: 61 TNELYNAVQLYLSSSVSIA 79

[Close]

BLAST of Lcy03g004380 vs. TAIR 10
Match: AT4G25835.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 108.6 bits (270), Expect = 2.3e-24
Identity = 53/79 (67.09%), Postives = 65/79 (82.28%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          MKEYW+SLASL+GVLAFCQ+L+  +FP ELRF + KLFN+ F+ FS++ YF+ITEIDGVN
Sbjct: 1  MKEYWTSLASLLGVLAFCQSLMNSVFPPELRFAISKLFNKFFKLFSTFCYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTIA 80
          TNELYNAV    S S +IA
Sbjct: 61 TNELYNAVQLYLSSSVSIA 79

[Close]

BLAST of Lcy03g004380 vs. TAIR 10
Match: AT4G30250.1 (P-loop containing nucleoside triphosphate hydrolases superfamily protein )

HSP 1 Score: 90.5 bits (223), Expect = 6.5e-19
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 0


Query: 1  MKEYWSSLASLIGVLAFCQTLLKEIFPLELRFTVLKLFNQLFRCFSSYVYFNITEIDGVN 60
          M +YW+++ASL+G+LAFCQT+++ +FP ELR   L    ++   FSS++YF+ITEIDGVN
Sbjct: 1  MSDYWTTMASLLGMLAFCQTIVQLVFPPELRLAFLHFLTRIRHVFSSHIYFDITEIDGVN 60

Query: 61 TNELYNAVSAPPSPSPTI 79
          TNELYNAV    S S T+
Sbjct: 61 TNELYNAVQLYLSSSVTV 78

The following BLAST results are available for this feature:

BLAST of Lcy03g004380 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9FKM3	5.0e-24	70.89	AAA-ATPase At5g57480 OS=Arabidopsis thaliana OX=3702 GN=At5g57480 PE=3 SV=1	[more]
Q8RY66	3.2e-23	67.09	AAA-ATPase At4g25835 OS=Arabidopsis thaliana OX=3702 GN=At4g25835 PE=2 SV=1	[more]
F4JPK8	9.1e-18	55.13	AAA-ATPase At4g30250 OS=Arabidopsis thaliana OX=3702 GN=At4g30250 PE=3 SV=1	[more]

BLAST of Lcy03g004380 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKZ7	2.8e-25	79.75	AAA-ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold152G00650 PE=...	[more]
A0A5A7UT03	2.8e-25	79.75	AAA-ATPase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold274G006210 PE...	[more]
A0A0A0LX94	2.8e-25	79.75	AAA domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G423100 PE=3 SV...	[more]
A0A1S3CPC3	2.8e-25	79.75	AAA-ATPase At5g57480-like OS=Cucumis melo OX=3656 GN=LOC103503281 PE=3 SV=1	[more]
A0A314UKY7	3.0e-24	73.17	AAA-ATPase OS=Prunus yedoensis var. nudiflora OX=2094558 GN=Pyn_27306 PE=4 SV=1	[more]

BLAST of Lcy03g004380 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038878733.1	4.4e-25	79.75	AAA-ATPase At5g57480 [Benincasa hispida]	[more]
XP_008465640.1	5.7e-25	79.75	PREDICTED: AAA-ATPase At5g57480-like [Cucumis melo]	[more]
XP_004146314.3	5.7e-25	79.75	AAA-ATPase At5g57480 [Cucumis sativus] >KGN65452.1 hypothetical protein Csa_0196...	[more]
KAA0058288.1	5.7e-25	79.75	AAA-ATPase [Cucumis melo var. makuwa]	[more]
TYK11844.1	5.7e-25	79.75	AAA-ATPase [Cucumis melo var. makuwa]	[more]

BLAST of Lcy03g004380 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G57480.1	3.6e-25	70.89	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G25835.1	2.3e-24	67.09	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]
AT4G30250.1	6.5e-19	55.13	P-loop containing nucleoside triphosphate hydrolases superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025753	AAA-type ATPase, N-terminal domain	PFAM	PF14363	AAA_assoc	coord: 26..69 e-value: 2.3E-6 score: 27.9
None	No IPR available	PANTHER	PTHR23070	BCS1 AAA-TYPE ATPASE	coord: 2..72
None	No IPR available	PANTHER	PTHR23070:SF107	BNAC06G41240D PROTEIN	coord: 2..72

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g004380.1	Lcy03g004380.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity