Lcy03g004360 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g004360
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	ATP-dependent DNA helicase
Location	Chr03: 20913355 .. 20913831 (-)
RNA-Seq Expression	Lcy03g004360
Synteny	Lcy03g004360

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACCATTTGTAGAAGAAGACTATATTTGCCTCCCAAATGATGTTGTCATTACAGGTGAAAGCGAAGATGATGCAATATTAAAATTATTGAATACTGTTTATCCTGATCTTGAAAAAAAAAATGCTACTTTGATAGAGTATATTACAAGTAGGGCAATTCTGTCAACCACAAATGAATATGTTGATCAAATGAATGAGAAAATGATTCATCTATTTCCTGGAAAAATAGAAGAATTCCTGAGTTTTGATGAGGCGATTGACGACACACATAATTACTACCAAGAAGAATTCCTCAATTCATTATTGCCCAATAGTGTCCCTCCTCACAAATTGATATTGAAAAAACATTGTCCAGTCATGTTATTGAGAAACTTAGACCCACCAAACGGTCTATGTAACGGAACTCGAATGATTTGTCATGAATTTCACAAAAATGTCATTTATGCAGAAATCGCAGTTGGACAACATGCATGA

mRNA sequence

ATGGAACCATTTGTAGAAGAAGACTATATTTGCCTCCCAAATGATGTTGTCATTACAGGTGAAAGCGAAGATGATGCAATATTAAAATTATTGAATACTGTTTATCCTGATCTTGAAAAAAAAAATGCTACTTTGATAGAGTATATTACAAGTAGGGCAATTCTGTCAACCACAAATGAATATGTTGATCAAATGAATGAGAAAATGATTCATCTATTTCCTGGAAAAATAGAAGAATTCCTGAGTTTTGATGAGGCGATTGACGACACACATAATTACTACCAAGAAGAATTCCTCAATTCATTATTGCCCAATAGTGTCCCTCCTCACAAATTGATATTGAAAAAACATTGTCCAGTCATGTTATTGAGAAACTTAGACCCACCAAACGGTCTATGTAACGGAACTCGAATGATTTGTCATGAATTTCACAAAAATGTCATTTATGCAGAAATCGCAGTTGGACAACATGCATGA

Coding sequence (CDS)

ATGGAACCATTTGTAGAAGAAGACTATATTTGCCTCCCAAATGATGTTGTCATTACAGGTGAAAGCGAAGATGATGCAATATTAAAATTATTGAATACTGTTTATCCTGATCTTGAAAAAAAAAATGCTACTTTGATAGAGTATATTACAAGTAGGGCAATTCTGTCAACCACAAATGAATATGTTGATCAAATGAATGAGAAAATGATTCATCTATTTCCTGGAAAAATAGAAGAATTCCTGAGTTTTGATGAGGCGATTGACGACACACATAATTACTACCAAGAAGAATTCCTCAATTCATTATTGCCCAATAGTGTCCCTCCTCACAAATTGATATTGAAAAAACATTGTCCAGTCATGTTATTGAGAAACTTAGACCCACCAAACGGTCTATGTAACGGAACTCGAATGATTTGTCATGAATTTCACAAAAATGTCATTTATGCAGAAATCGCAGTTGGACAACATGCATGA

Protein sequence

MEPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEYVDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVMLLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA

Homology

[Close]

BLAST of Lcy03g004360 vs. ExPASy TrEMBL
Match: A0A6J1DFU4 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 SV=1)

HSP 1 Score: 253.8 bits (647), Expect = 4.6e-64
Identity = 119/157 (75.80%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP VE+DYICL +D+ ITGE+++ AI+KLLN VYPDLE +NAT  EY+T+R ILSTTNEY
Sbjct: 93  EPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLE-QNATSSEYMTNRVILSTTNEY 152

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VDQ+NEKMI LFPGK  EF+SFDEAIDDTHNYYQEEFLNSLLPN +PPHKL+LK +CPV+
Sbjct: 153 VDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQEEFLNSLLPNGIPPHKLMLKANCPVI 212

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C EF KN+IYAEI  GQ+A
Sbjct: 213 LLRNLDPANGLCNGTRMVCREFRKNIIYAEITTGQNA 248

[Close]

BLAST of Lcy03g004360 vs. ExPASy TrEMBL
Match: A0A6J1E1J0 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 5.8e-59
Identity = 112/157 (71.34%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP + EDY+ LP D+ I  E  +D++LKLLN VYPDL  +NA   EYIT+RAILSTTNEY
Sbjct: 21  EPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDL-PQNAMSAEYITNRAILSTTNEY 80

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD++N KMI LFPG IEEF+SFDEAIDDTH+YYQEEFLNSLLPN +PPHKL+LK +CP++
Sbjct: 81  VDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQEEFLNSLLPNGIPPHKLMLKINCPII 140

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C +F KNVI AEI  GQHA
Sbjct: 141 LLRNLDPSNGLCNGTRMVCRKFQKNVIDAEITSGQHA 176

[Close]

BLAST of Lcy03g004360 vs. ExPASy TrEMBL
Match: A0A6J1DMF2 (ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 7.6e-59
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP + EDY+ LP D+ I  E  +D++LKLLN VYPDL  +NA   EYIT+RAILSTTNEY
Sbjct: 155 EPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDL-PQNAMSAEYITNRAILSTTNEY 214

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD++N KMI LF G IEEF+SFDE IDDTH+YYQEEFLNSLLPN +PPHKLILK +CP++
Sbjct: 215 VDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQEEFLNSLLPNGIPPHKLILKINCPII 274

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C +F KNVIYAEI  GQHA
Sbjct: 275 LLRNLDPSNGLCNGTRMVCRKFQKNVIYAEITSGQHA 310

[Close]

BLAST of Lcy03g004360 vs. ExPASy TrEMBL
Match: A0A5B7A9C3 (ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.4e-50
Identity = 97/157 (61.78%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 2    EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
            EP   +D I +P+ +VI  E+++ +  KL++ +YP LE +NA   EY+T RAIL+T NEY
Sbjct: 1233 EPTNNQDMILIPDQMVIKYENDEVSEQKLIDDIYPSLE-QNAKSAEYMTKRAILATKNEY 1292

Query: 62   VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
            VD++NEK+I +FPG +  F SFDEAIDDTHNYYQEEFLNSL PN +PPH+L+LK + P+M
Sbjct: 1293 VDKLNEKLIEMFPGDVRTFNSFDEAIDDTHNYYQEEFLNSLTPNGLPPHRLVLKVNSPIM 1352

Query: 122  LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
            LLRNLDP NGLCNGTRM+C  F  NVI+AEI VGQHA
Sbjct: 1353 LLRNLDPSNGLCNGTRMVCRNFESNVIHAEITVGQHA 1388

[Close]

BLAST of Lcy03g004360 vs. ExPASy TrEMBL
Match: A0A5B7A5M4 (ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021511 PE=3 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.5e-49
Identity = 96/157 (61.15%), Postives = 123/157 (78.34%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP   +D I +P+ +VI  E+++ +  KL++ +YP LE +NA   EY+T RAIL+T NEY
Sbjct: 207 EPTNNQDMILIPDQMVIKYENDEVSEQKLIDDIYPFLE-QNAKSAEYMTKRAILATKNEY 266

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD++NEK+I +FPG +  F SFDEAIDDTHNYYQEEFLNSL PN +PPH+L+LK + P+M
Sbjct: 267 VDKLNEKLIEMFPGDVRTFNSFDEAIDDTHNYYQEEFLNSLTPNGLPPHRLVLKVNSPIM 326

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C  F  NVI+AEI +GQHA
Sbjct: 327 LLRNLDPSNGLCNGTRMVCRNFESNVIHAEITIGQHA 362

[Close]

BLAST of Lcy03g004360 vs. NCBI nr
Match: XP_022152307.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 253.8 bits (647), Expect = 9.5e-64
Identity = 119/157 (75.80%), Postives = 138/157 (87.90%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP VE+DYICL +D+ ITGE+++ AI+KLLN VYPDLE +NAT  EY+T+R ILSTTNEY
Sbjct: 93  EPSVEDDYICLTDDITITGENDEGAIMKLLNVVYPDLE-QNATSSEYMTNRVILSTTNEY 152

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VDQ+NEKMI LFPGK  EF+SFDEAIDDTHNYYQEEFLNSLLPN +PPHKL+LK +CPV+
Sbjct: 153 VDQINEKMIQLFPGKFFEFMSFDEAIDDTHNYYQEEFLNSLLPNGIPPHKLMLKANCPVI 212

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C EF KN+IYAEI  GQ+A
Sbjct: 213 LLRNLDPANGLCNGTRMVCREFRKNIIYAEITTGQNA 248

[Close]

BLAST of Lcy03g004360 vs. NCBI nr
Match: XP_022159149.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 236.9 bits (603), Expect = 1.2e-58
Identity = 112/157 (71.34%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP + EDY+ LP D+ I  E  +D++LKLLN VYPDL  +NA   EYIT+RAILSTTNEY
Sbjct: 21  EPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDL-PQNAMSAEYITNRAILSTTNEY 80

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD++N KMI LFPG IEEF+SFDEAIDDTH+YYQEEFLNSLLPN +PPHKL+LK +CP++
Sbjct: 81  VDEINNKMIRLFPGNIEEFMSFDEAIDDTHSYYQEEFLNSLLPNGIPPHKLMLKINCPII 140

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C +F KNVI AEI  GQHA
Sbjct: 141 LLRNLDPSNGLCNGTRMVCRKFQKNVIDAEITSGQHA 176

[Close]

BLAST of Lcy03g004360 vs. NCBI nr
Match: XP_022155233.1 (ATP-dependent DNA helicase PIF1-like [Momordica charantia])

HSP 1 Score: 236.5 bits (602), Expect = 1.6e-58
Identity = 112/157 (71.34%), Postives = 130/157 (82.80%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP + EDY+ LP D+ I  E  +D++LKLLN VYPDL  +NA   EYIT+RAILSTTNEY
Sbjct: 155 EPSIVEDYVRLPKDIAIIDEGHEDSVLKLLNIVYPDL-PQNAMSAEYITNRAILSTTNEY 214

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD++N KMI LF G IEEF+SFDE IDDTH+YYQEEFLNSLLPN +PPHKLILK +CP++
Sbjct: 215 VDEINNKMIRLFLGNIEEFMSFDETIDDTHSYYQEEFLNSLLPNGIPPHKLILKINCPII 274

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C +F KNVIYAEI  GQHA
Sbjct: 275 LLRNLDPSNGLCNGTRMVCRKFQKNVIYAEITSGQHA 310

[Close]

BLAST of Lcy03g004360 vs. NCBI nr
Match: XP_004136446.2 (ATP-dependent DNA helicase PIF1-like [Cucumis sativus])

HSP 1 Score: 228.4 bits (581), Expect = 4.3e-56
Identity = 110/157 (70.06%), Postives = 131/157 (83.44%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           E   E+DYICLP+++ +TG +E+D+ILKLLN VY DL K +AT   Y+TSRAILSTTNEY
Sbjct: 61  EMSTEDDYICLPSNITVTGANEEDSILKLLNIVYADL-KTHATSANYMTSRAILSTTNEY 120

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VDQ++E+MI LFP      +S+DEAIDDTHNYYQE+FLNSLLPN VPPHKL LKK CPV+
Sbjct: 121 VDQISERMIELFPSS----MSYDEAIDDTHNYYQEKFLNSLLPNGVPPHKLFLKKDCPVI 180

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NGLCNGTRM+C +F KN+IYAEIA GQ+A
Sbjct: 181 LLRNLDPGNGLCNGTRMVCRKFRKNIIYAEIATGQNA 212

[Close]

BLAST of Lcy03g004360 vs. NCBI nr
Match: XP_020255701.1 (ATP-dependent DNA helicase PIF6-like [Asparagus officinalis])

HSP 1 Score: 205.7 bits (522), Expect = 3.0e-49
Identity = 91/157 (57.96%), Postives = 129/157 (82.17%), Query Frame = 0


Query: 2   EPFVEEDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEY 61
           EP ++E+ I LP+++V+  ++++++   L++ ++P L+  N++  EY+T RAILST NEY
Sbjct: 21  EPTIDENLILLPHEMVVEYDNDENSEKNLIDAIFPSLQ-SNSSSAEYMTQRAILSTRNEY 80

Query: 62  VDQMNEKMIHLFPGKIEEFLSFDEAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCPVM 121
           VD +NEK+I LFPG+ + F SFDEA+DDT+NYYQEEFLN+L+PN +PPHKLILK++CP+M
Sbjct: 81  VDGLNEKLIALFPGEAKTFFSFDEAVDDTNNYYQEEFLNTLMPNGLPPHKLILKRNCPIM 140

Query: 122 LLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           LLRNLDP NG+CNGTRMIC  +  NVI+AEI +GQH+
Sbjct: 141 LLRNLDPSNGMCNGTRMICRGYEHNVIHAEITIGQHS 176

[Close]

BLAST of Lcy03g004360 vs. TAIR 10
Match: AT5G28780.1 (PIF1 helicase )

HSP 1 Score: 88.2 bits (217), Expect = 6.5e-18
Identity = 49/118 (41.53%), Postives = 67/118 (56.78%), Query Frame = 0


Query: 47  EYITSRAILSTTNEYVDQMNEKMIHLFPGKIEEFLS------FDEAIDDTHNYYQEEFLN 106
           +Y+T R IL+  NEYVD++N  M+    G  +E+LS       D    D    Y  ++LN
Sbjct: 113 QYLTERGILTPHNEYVDEINAYMLSQVGGDSKEYLSSYSIGKADTIGADYEALYHVKYLN 172

Query: 107 SLLPNSVPPHKLILKKHCPVMLLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQHA 159
           SL   S+P HK+ LKK  P+M +RN +   GLCNGTR+I     + VI A+I  G HA
Sbjct: 173 SLEFPSLPKHKISLKKGVPIMQMRNFNQKEGLCNGTRLIVTNLGEQVIEAQIVTGTHA 230

[Close]

BLAST of Lcy03g004360 vs. TAIR 10
Match: AT3G51690.1 (PIF1 helicase )

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-11
Identity = 49/134 (36.57%), Postives = 70/134 (52.24%), Query Frame = 0


Query: 7   EDYICLPNDVVITGESEDDAILKLLNTVYPDLEKKNATLIEYITSRAILSTTNEYVDQMN 66
           E  I +  D++IT     D I  LL  VY +   K+    ++    AIL   ++ VDQ+N
Sbjct: 78  ETEIDISKDLLIT--ESKDPIKTLLKEVYGEYFAKSYN-PDFCHDSAILCHRDDDVDQIN 137

Query: 67  EKMIHLFPGKIEEFLSFDEAIDDTHN--YYQEEFLNSLLPNSVPPHKLILKKHCPVMLLR 126
           + M+ L PG+ +E LS D      ++  +   E LNS+    +P  KL LK   PVMLLR
Sbjct: 138 DYMLSLLPGEEKECLSTDSISPSPNDDMFVPLEVLNSIKVPGLPDFKLRLKVGAPVMLLR 197

Query: 127 NLDPPNGLCNGTRM 139
           +LDP  G   GTR+
Sbjct: 198 DLDPSRGFFTGTRL 208

[Close]

BLAST of Lcy03g004360 vs. TAIR 10
Match: AT3G51700.1 (PIF1 helicase )

HSP 1 Score: 55.1 bits (131), Expect = 6.1e-08
Identity = 50/158 (31.65%), Postives = 72/158 (45.57%), Query Frame = 0


Query: 7   EDYICLPNDVVITGESEDDAILKLLNTVYPD--LEKKNATLIEYITSRAILSTTNEYVDQ 66
           E  I +  D++IT     D I  +++ VY +   E  N    ++   RAIL  TN+  D+
Sbjct: 79  ETKIDIHEDLLIT--ECKDPIKTIVDEVYGESFTESYNP---DFYQERAILCHTNDVADE 138

Query: 67  MNEKMIHLFPGKIEEFLSFD-----EAIDDTHNYYQEEFLNSLLPNSVPPHKLILKKHCP 126
           +N+ M+    G+  +    D      A  +    Y  EFLNS+     P  KL LK   P
Sbjct: 139 INDYMLSQLQGEETKCYGADTIYPTHASPNDKMLYPLEFLNSIKIPGFPDFKLRLKVGAP 198

Query: 127 VMLLRNLDPPNGLCNGTRMICHEFHKNVIYAEIAVGQH 158
           VMLLR+L P   L  GTR+        V+ A I  G +
Sbjct: 199 VMLLRDLAPYGWLRKGTRLQITRVETFVLEAMIITGNN 231

The following BLAST results are available for this feature:

BLAST of Lcy03g004360 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g004360 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DFU4	4.6e-64	75.80	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111020055 PE=3 S...	[more]
A0A6J1E1J0	5.8e-59	71.34	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111025574 PE=3 S...	[more]
A0A6J1DMF2	7.6e-59	71.34	ATP-dependent DNA helicase OS=Momordica charantia OX=3673 GN=LOC111022374 PE=3 S...	[more]
A0A5B7A9C3	8.4e-50	61.78	ATP-dependent DNA helicase OS=Davidia involucrata OX=16924 GN=Din_021512 PE=3 SV...	[more]
A0A5B7A5M4	2.5e-49	61.15	ATP-dependent DNA helicase (Fragment) OS=Davidia involucrata OX=16924 GN=Din_021...	[more]

BLAST of Lcy03g004360 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022152307.1	9.5e-64	75.80	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_022159149.1	1.2e-58	71.34	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_022155233.1	1.6e-58	71.34	ATP-dependent DNA helicase PIF1-like [Momordica charantia]	[more]
XP_004136446.2	4.3e-56	70.06	ATP-dependent DNA helicase PIF1-like [Cucumis sativus]	[more]
XP_020255701.1	3.0e-49	57.96	ATP-dependent DNA helicase PIF6-like [Asparagus officinalis]	[more]

BLAST of Lcy03g004360 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G28780.1	6.5e-18	41.53	PIF1 helicase	[more]
AT3G51690.1	2.0e-11	36.57	PIF1 helicase	[more]
AT3G51700.1	6.1e-08	31.65	PIF1 helicase	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010285	DNA helicase Pif1-like	PFAM	PF05970	PIF1	coord: 7..142 e-value: 4.8E-33 score: 114.8
None	No IPR available	PANTHER	PTHR10492	UNCHARACTERIZED	coord: 6..158
None	No IPR available	PANTHER	PTHR10492:SF76	ATP-DEPENDENT DNA HELICASE	coord: 6..158
IPR027417	P-loop containing nucleoside triphosphate hydrolase	SUPERFAMILY	52540	P-loop containing nucleoside triphosphate hydrolases	coord: 24..153

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g004360.1	Lcy03g004360.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032508	DNA duplex unwinding
biological_process	GO:0006310	DNA recombination
biological_process	GO:0006281	DNA repair
biological_process	GO:0000723	telomere maintenance
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0016887	ATP hydrolysis activity
molecular_function	GO:0003678	DNA helicase activity