Lcy03g004160 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g004160
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionRetrotrans_gag domain-containing protein
LocationChr03: 19813364 .. 19815726 (-)
RNA-Seq ExpressionLcy03g004160
SyntenyLcy03g004160
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCACTCGTTCCGTGCAGAATAAGAATTTAAGATACAATCTTGAGATCACATGGGAAGAGCGACGCCTGAGGAGGCGAGCCAAGTGCAGAGAGAGCGAGAGAAGAGAACCTATTCACTTTCCTGAGATGGGTGACCAGACGCTCAGACATATGGTAGGGCCTGATTTAAATCAGCAGCCCCTCTGTATCACCTACCTTGAAATAGAAGGTACCTTCGAACTTAAATCCGGTTTGATCCACCTACTGCCTATCTTTCGTGGTAGTGCGCATGAGAAGATCCACATTAGCATCTGAAGGATTTCCATATCGTGTGCTCTGGTATGAGGCCACACGAAGTCACAGAGGAGGCTATCAACCTAAGGGCATTTTTGAAAGTGTTAATATCTAAATTACGGAAGCAATTTTGAATCTTAGGCACTTAATAAGCTCAATTTAATCAATCTTTACATGTTGTTCATGAGAAGAAAACACAGAGACAGAATACCAACCTCTTTTACATGGAGAAATTGGTTGGATTCTTTTGTTGTTTTTCTTCACCAATCAATCACGAACCACCACTGCATCTTCCTTGCTGTCCTCAAGCCTTTGAAACGGATTGTGGGATCCTCTTGTGATGGAATTTGAAGGGAAAAGCTTGAAGAACAAGCTTATGGAGGTGGGTTTGGTCTGGCAGCAATTCACTATCTGATTCAATTAGTTGTTCCAGCCTTTTTCTTCCCTTTTATAGAGGGATCAAAGATGAAGAAAAGCCCCTGAGATTGACACCAATTCAGCCACTAATTAGTGGGAAATGGTGTGGCTTAAGAGAGGGGAGTGCATGAGTTTAGTCACCATGCACTCCACCTCCAAAAAATCAAATTATTTTGATTTTAACTAATTCAAGATAATCTTGAATTAATTTGTTTAATTATTTAATTTTTAATAATCTGAAATTTTTAAAATCAAATTTTAATTTTTCAATGTTAGATTAATTCAAAATTAATTTAAAATAATTATTAATCAAGTAATTATTAATTAATTTAATATCCAATATCAAATTAATATTTTGCCATCAACCCCGAACATTTCTGAAATGTTATTTTTCAACCATGAATCCCTATTCATGTTCTCGATATTTAAATCCTATTTAAATATTAAATCTCTCATAAACCCGATCTACACAAAACTCGACGTATCGATAACATCAACCACCTCTAACCATATCCCTAAACTGAATTCAAAGTAATTCATATTCTATCTGTCATATTGTTTCAAACGTTAGTCTCAAGCTAGCAAGGGGATCTAATGGACCTACAGATCATGGGTTCCAACGGTACGAGGTTTAATCGATTAAACCCTTTTAACCTAGCTAACCAACATCCGTTAACTACCGGGACACTCCACTATATCCTAGTAGTTGAACTCCCTTCACTGTAGATATATTTGCGTCCACTTGATGTAACCATGATCAGTAAGTCAATCCTTCACAAGTCGCTCGTTACTATAGCTAGGTCAAATGTTCGTTTTACCCCTATAGTACATCTTAGTTCTTTATGTCCACTGGTCTTCTAATGAACAATTTGTTTATGGTCCAACCACTAAACAAAGTCCCTCTCGGGCCAATGAGAGGGTGGGGCCCCTTGTTCAAGCCTTGGATTCAGCACTTAAGTGAACAACCTCTCTACTATTCCTAAATTGGGTAAGAGTGAATTCCGTCTTGATTTACTATGTCCCTAGCTATCCATCTAGTCTTATCTCCAAAATTGTAGGTTTATTGAATGACACTTTTGAACCACTCTCACCCATGCAGATCAAAAGATAATCCTAAATGAACAGGAGTTCACAGCAAGCTCAGGATTAAGATCGAGTTACCTAGGTCATCTCATGAAATAGTCAGTCTTAACAATAAACGATGTTATAAAGTAAGAGTGACTTATTTCTCGATCCTGTCTTGTGTAAGTGAAATGCGCTCTGAACTATCTAATTTAGCTAAGCTTGTTCGTTCTACGTGTGTAGGTAAGACACAGGTAAAGGCTTGTGGGTTGTGTTCGATGACCTCCCACACTACTGATGAATGTCTCCAGCTCGAAGAGAGCAGTGAAGTCAATGCCATAGGAGGCTATGCTGTGAACAACGAAAACCAAAGGCCCTACAATCCATACGAGAGCACCTATAATCCGGGGTGGCGTGACCATCCAAACTTCAACTATGGGAATCAAAAGTCCAAGGTGTTCAAGCAGAACCAAGCCACAAGTTCCTCTTCAAGTAAGTCTTTAGATGAGATCGTTGAGGAGCTTGCTGACAGTTCTTTGCAGTTCCAGAAGGAAACCAGGAACACAATTCAGAACCTAGGGAGTCAGATGACTCAAATGGCCACATAA

mRNA sequence

ATGATCACTCGTTCCGTGCAGAATAAGAATTTAAGATACAATCTTGAGATCACATGGGAAGAGCGACGCCTGAGGAGGCGAGCCAAGTGCAGAGAGAGCGAGAGAAGAGAACCTATTCACTTTCCTGAGATGGGTGACCAGACGCTCAGACATATGGTAGGGCCTGATTTAAATCAGCAGCCCCTCTGTATCACCTACCTTGAAATAGAAGGTAAGACACAGGTAAAGGCTTGTGGGTTGTGTTCGATGACCTCCCACACTACTGATGAATGTCTCCAGCTCGAAGAGAGCAGTGAAGTCAATGCCATAGGAGGCTATGCTGTGAACAACGAAAACCAAAGGCCCTACAATCCATACGAGAGCACCTATAATCCGGGGTGGCGTGACCATCCAAACTTCAACTATGGGAATCAAAAGTCCAAGGTGTTCAAGCAGAACCAAGCCACAAGTTCCTCTTCAAGTAAGTCTTTAGATGAGATCGTTGAGGAGCTTGCTGACAGTTCTTTGCAGTTCCAGAAGGAAACCAGGAACACAATTCAGAACCTAGGGAGTCAGATGACTCAAATGGCCACATAA

Coding sequence (CDS)

ATGATCACTCGTTCCGTGCAGAATAAGAATTTAAGATACAATCTTGAGATCACATGGGAAGAGCGACGCCTGAGGAGGCGAGCCAAGTGCAGAGAGAGCGAGAGAAGAGAACCTATTCACTTTCCTGAGATGGGTGACCAGACGCTCAGACATATGGTAGGGCCTGATTTAAATCAGCAGCCCCTCTGTATCACCTACCTTGAAATAGAAGGTAAGACACAGGTAAAGGCTTGTGGGTTGTGTTCGATGACCTCCCACACTACTGATGAATGTCTCCAGCTCGAAGAGAGCAGTGAAGTCAATGCCATAGGAGGCTATGCTGTGAACAACGAAAACCAAAGGCCCTACAATCCATACGAGAGCACCTATAATCCGGGGTGGCGTGACCATCCAAACTTCAACTATGGGAATCAAAAGTCCAAGGTGTTCAAGCAGAACCAAGCCACAAGTTCCTCTTCAAGTAAGTCTTTAGATGAGATCGTTGAGGAGCTTGCTGACAGTTCTTTGCAGTTCCAGAAGGAAACCAGGAACACAATTCAGAACCTAGGGAGTCAGATGACTCAAATGGCCACATAA

Protein sequence

MITRSVQNKNLRYNLEITWEERRLRRRAKCRESERREPIHFPEMGDQTLRHMVGPDLNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDECLQLEESSEVNAIGGYAVNNENQRPYNPYESTYNPGWRDHPNFNYGNQKSKVFKQNQATSSSSSKSLDEIVEELADSSLQFQKETRNTIQNLGSQMTQMAT
Homology
BLAST of Lcy03g004160 vs. ExPASy TrEMBL
Match: A0A1U8Q0P7 (uncharacterized protein LOC104587430 OS=Nelumbo nucifera OX=4432 GN=LOC104587430 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 3.8e-20
Identity = 66/128 (51.56%), Postives = 84/128 (65.62%), Query Frame = 0

Query: 75  VKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQRPYNPYESTYNPGWRDHPN 134
           VKACG+CS+  H TD C  LQ E   +VNA GG+    + QR Y+PY STYNP WRDHPN
Sbjct: 73  VKACGICSVVGHPTDMCPTLQEEPIEQVNAAGGFP--GQPQRKYDPYSSTYNPRWRDHPN 132

Query: 135 FNYGN-QKSKVFKQNQ--------ATSSSSSKSLDEIVEELADSSLQFQKETRNTIQNLG 192
            +YGN Q  + F+Q Q          +S SS SL+ IV+ LA ++LQFQ+ETR +IQ+L 
Sbjct: 133 LSYGNPQNRQTFQQYQPHPPRQQPTQTSDSSMSLEGIVKSLATNTLQFQQETRASIQHLD 192

BLAST of Lcy03g004160 vs. ExPASy TrEMBL
Match: A0A2G9G7U9 (DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_26122 PE=4 SV=1)

HSP 1 Score: 107.8 bits (268), Expect = 4.9e-20
Identity = 66/132 (50.00%), Postives = 89/132 (67.42%), Query Frame = 0

Query: 69  IEGKT-QVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQRPYNPYESTYNP 128
           + GKT QVKACG+C+ T+H TD C  LQ E   + NA+GG+      QR Y+PY +TYNP
Sbjct: 300 VAGKTHQVKACGICANTNHPTDMCPTLQEEPCEQTNAVGGFP--GPPQRKYDPYSNTYNP 359

Query: 129 GWRDHPNFNY----GNQKSKVFKQ--NQATSSSSSKSLDEIVEELADSSLQFQKETRNTI 188
           GWRDHPNF+Y     N ++   KQ   Q  +SSS  SL++IV+ LA ++ QFQ+ETR +I
Sbjct: 360 GWRDHPNFSYRTRQPNYQNFQHKQPPPQQPTSSSGMSLEDIVKSLATNTQQFQQETRKSI 419

Query: 189 QNLGSQMTQMAT 192
           Q+L  Q+ Q+AT
Sbjct: 420 QDLEKQVGQLAT 429

BLAST of Lcy03g004160 vs. ExPASy TrEMBL
Match: A0A1U8ARH5 (uncharacterized protein LOC104605763 OS=Nelumbo nucifera OX=4432 GN=LOC104605763 PE=4 SV=1)

HSP 1 Score: 106.7 bits (265), Expect = 1.1e-19
Identity = 71/156 (45.51%), Postives = 92/156 (58.97%), Query Frame = 0

Query: 57  LNQQPLCITYLEIE---GKTQ-VKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNN 116
           L QQ   +T L  +   GK Q +K CG+CS+  H TD C  LQ E   +VNA+GG+    
Sbjct: 27  LEQQIASLTSLVCQMAVGKMQTMKVCGICSIVGHPTDMCPTLQEEPVEQVNAVGGFP--G 86

Query: 117 ENQRPYNPYESTYNPGWRDHPNFNYGN--------QKSKVFKQNQ--------ATSSSSS 176
           + QR Y+PY STYNPGWRDHPN +YGN        Q    F+Q Q          +S S 
Sbjct: 87  QPQRKYDPYSSTYNPGWRDHPNLSYGNPQNHPSFPQYHPTFQQYQPHPPRQQPTQNSDSD 146

Query: 177 KSLDEIVEELADSSLQFQKETRNTIQNLGSQMTQMA 191
             L++IV+ LA ++LQFQ+ETR +IQ L +QM QMA
Sbjct: 147 MFLEDIVKSLAINTLQFQQETRTSIQRLDNQMGQMA 180

BLAST of Lcy03g004160 vs. ExPASy TrEMBL
Match: A0A2G9I3Q1 (Retrotrans_gag domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_02876 PE=4 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 3.2e-19
Identity = 65/158 (41.14%), Postives = 92/158 (58.23%), Query Frame = 0

Query: 43  EMGDQTLRHMVGPDLNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDECLQLEESS--EV 102
           E+ + +L H +    +     +  L +    QVKACG+C+   H TD C  L+E S    
Sbjct: 115 EVSNSSLEHQI----SNLTSLVQQLVVGKVQQVKACGICANIGHPTDMCPTLQEDSFEHA 174

Query: 103 NAIGGYAVNNENQRPYNPYESTYNPGWRDHPNFNYG-------NQKSKVFKQNQATSSSS 162
           NA+GG+      QR Y+PY +TYNPGWRDHPN +YG       N +S+       +SS S
Sbjct: 175 NAVGGFP--GPPQRKYDPYSNTYNPGWRDHPNLSYGARPPNFQNFQSRPSAPPPHSSSES 234

Query: 163 SKSLDEIVEELADSSLQFQKETRNTIQNLGSQMTQMAT 192
              L+EIV+ LA ++ QFQ+ETR +IQNL  Q++Q+AT
Sbjct: 235 GMPLEEIVKSLAINTQQFQQETRESIQNLERQVSQLAT 266

BLAST of Lcy03g004160 vs. ExPASy TrEMBL
Match: A0A1U7ZEK1 (uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 5.5e-19
Identity = 65/127 (51.18%), Postives = 82/127 (64.57%), Query Frame = 0

Query: 74  QVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQRPYNPYESTYNPGWRDHP 133
           QVK CG+CS T H TD C  LQ E   + NA+GG+      QR Y+PY +TYN  WRDHP
Sbjct: 310 QVKTCGICSTTGHPTDMCPTLQDEPYEQANAVGGFP-----QRRYDPYLNTYNVEWRDHP 369

Query: 134 NFNYGNQKSKVFKQNQA-------TSSSSSKSLDEIVEELADSSLQFQKETRNTIQNLGS 192
           N NYG  K   F+Q QA       +SS    SLDEIV+ LA ++ QFQ+ETR +IQNL +
Sbjct: 370 NLNYG-AKPFGFQQYQARQPAPQHSSSKPGMSLDEIVKALATNTQQFQQETRTSIQNLEN 429

BLAST of Lcy03g004160 vs. NCBI nr
Match: XP_019157176.1 (PREDICTED: uncharacterized protein LOC109153766 [Ipomoea nil])

HSP 1 Score: 116.7 bits (291), Expect = 2.2e-22
Identity = 67/141 (47.52%), Postives = 98/141 (69.50%), Query Frame = 0

Query: 57  LNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQR 116
           L+Q    +  L +    QVKACG+C++T H TD C  LQ     +VNA+GG+    + QR
Sbjct: 233 LSQLTTLVQQLVVRNVQQVKACGICAVTGHPTDMCPTLQYNSCDDVNAVGGFP--GQPQR 292

Query: 117 PYNPYESTYNPGWRDHPNFNYGNQKSKV-FKQ---NQATSSSSSKSLDEIVEELADSSLQ 176
            Y+PY +TYNPGWRDHPNF+Y   K+++ F+Q   +Q +SS+S  SL++IV+ LA ++ Q
Sbjct: 293 NYDPYSNTYNPGWRDHPNFSY---KARLQFQQPSSSQQSSSNSGMSLEDIVKSLATNTQQ 352

Query: 177 FQKETRNTIQNLGSQMTQMAT 192
           FQ+ETR +IQ+L SQM+Q+A+
Sbjct: 353 FQQETRTSIQHLESQMSQLAS 368

BLAST of Lcy03g004160 vs. NCBI nr
Match: XP_019155105.1 (PREDICTED: uncharacterized protein LOC109151969 [Ipomoea nil])

HSP 1 Score: 112.5 bits (280), Expect = 4.1e-21
Identity = 64/141 (45.39%), Postives = 94/141 (66.67%), Query Frame = 0

Query: 57  LNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQR 116
           L+Q    +  L +    QVKACG+C++T H TD C  LQ     +VNA+GG+    + QR
Sbjct: 323 LSQLTTLVQQLVVRNVQQVKACGICAVTGHPTDMCPTLQYNSCEDVNAVGGFP--GQPQR 382

Query: 117 PYNPYESTYNPGWRDHPNFNYGNQKSKVFKQ----NQATSSSSSKSLDEIVEELADSSLQ 176
            Y+PY +TYNPGWRDHPNF+Y  +    F+Q     Q +SS+S  SL++IV+ LA ++ Q
Sbjct: 383 NYDPYSNTYNPGWRDHPNFSY--KARPQFQQFQPIPQQSSSNSGTSLEDIVKSLATNTQQ 442

Query: 177 FQKETRNTIQNLGSQMTQMAT 192
           FQ++TR +IQ+L SQ++Q+A+
Sbjct: 443 FQQKTRTSIQHLESQLSQLAS 459

BLAST of Lcy03g004160 vs. NCBI nr
Match: XP_019178826.1 (PREDICTED: uncharacterized protein LOC109173960 [Ipomoea nil])

HSP 1 Score: 110.5 bits (275), Expect = 1.6e-20
Identity = 66/146 (45.21%), Postives = 94/146 (64.38%), Query Frame = 0

Query: 57  LNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQR 116
           L+Q    +  L +    QVKACG+C++T H TD C  LQ      VNA+GG+    + QR
Sbjct: 126 LSQLTTLVQQLVVRNVQQVKACGICAVTGHPTDMCPTLQYNSCEGVNAVGGFP--GQPQR 185

Query: 117 PYNPYESTYNPGWRDHPNFNYG-----NQKSKVFKQ----NQATSSSSSKSLDEIVEELA 176
            Y+PY +TYNPGWRDHPNF+Y       Q   V +Q    +Q +SS+S  SL++IV+ LA
Sbjct: 186 NYDPYSNTYNPGWRDHPNFSYKARPQFQQYQHVPQQQPSSSQQSSSNSGTSLEDIVKSLA 245

Query: 177 DSSLQFQKETRNTIQNLGSQMTQMAT 192
            ++ QFQ+ETR +IQ+L SQ++Q+A+
Sbjct: 246 TNTQQFQQETRTSIQHLESQVSQLAS 269

BLAST of Lcy03g004160 vs. NCBI nr
Match: XP_019197814.1 (PREDICTED: uncharacterized protein LOC109191648 [Ipomoea nil])

HSP 1 Score: 110.2 bits (274), Expect = 2.1e-20
Identity = 65/146 (44.52%), Postives = 94/146 (64.38%), Query Frame = 0

Query: 57  LNQQPLCITYLEIEGKTQVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQR 116
           L+Q    +  L +    QVKACG+C++T H TD C  LQ     +VNA+GG+    + QR
Sbjct: 293 LSQLTTLVQQLVVRNVQQVKACGICAVTGHPTDMCPTLQYNSCEDVNAVGGFL--GQPQR 352

Query: 117 PYNPYESTYNPGWRDHPNFNYG-----NQKSKVFKQ----NQATSSSSSKSLDEIVEELA 176
            Y+PY +TYNPGWRDHPNF+Y       Q   V +Q    +Q +SS+S   L++IV+ LA
Sbjct: 353 NYDPYSNTYNPGWRDHPNFSYKARPQFQQYQHVPQQQPSSSQQSSSNSGTPLEDIVKSLA 412

Query: 177 DSSLQFQKETRNTIQNLGSQMTQMAT 192
            ++ QFQ+ETR +IQ+L SQ++Q+A+
Sbjct: 413 TNTQQFQQETRTSIQHLESQVSQLAS 436

BLAST of Lcy03g004160 vs. NCBI nr
Match: XP_031105706.1 (uncharacterized protein LOC116010433 [Ipomoea triloba])

HSP 1 Score: 109.8 bits (273), Expect = 2.7e-20
Identity = 64/141 (45.39%), Postives = 93/141 (65.96%), Query Frame = 0

Query: 64  ITYLEIEGKTQVKACGLCSMTSHTTDEC--LQLEESSEVNAIGGYAVNNENQRPYNPYES 123
           +  L + G  QVKACG+C+ T H TD C  LQ +   + NAIGG+    + QR Y+PY +
Sbjct: 300 VQQLAVGGTHQVKACGICAATGHQTDMCLTLQYDYCEQANAIGGFP--GQPQRNYDPYSN 359

Query: 124 TYNPGWRDHPNFNYGN-------QKSKVFKQNQATS----SSSSKSLDEIVEELADSSLQ 183
           TYNPGWRDHPNF+Y         Q  ++ ++  ++S    S+SS SL++IV+ LA ++ Q
Sbjct: 360 TYNPGWRDHPNFSYKPRPQFPQFQPRQLIQEQPSSSQQPYSNSSMSLEDIVKSLATNTQQ 419

Query: 184 FQKETRNTIQNLGSQMTQMAT 192
           FQ+ETR +IQ+L SQM+Q+A+
Sbjct: 420 FQQETRTSIQHLESQMSQLAS 438

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1U8Q0P73.8e-2051.56uncharacterized protein LOC104587430 OS=Nelumbo nucifera OX=4432 GN=LOC104587430... [more]
A0A2G9G7U94.9e-2050.00DNA-directed DNA polymerase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_261... [more]
A0A1U8ARH51.1e-1945.51uncharacterized protein LOC104605763 OS=Nelumbo nucifera OX=4432 GN=LOC104605763... [more]
A0A2G9I3Q13.2e-1941.14Retrotrans_gag domain-containing protein OS=Handroanthus impetiginosus OX=429701... [more]
A0A1U7ZEK15.5e-1951.18uncharacterized protein LOC104589313 OS=Nelumbo nucifera OX=4432 GN=LOC104589313... [more]
Match NameE-valueIdentityDescription
XP_019157176.12.2e-2247.52PREDICTED: uncharacterized protein LOC109153766 [Ipomoea nil][more]
XP_019155105.14.1e-2145.39PREDICTED: uncharacterized protein LOC109151969 [Ipomoea nil][more]
XP_019178826.11.6e-2045.21PREDICTED: uncharacterized protein LOC109173960 [Ipomoea nil][more]
XP_019197814.12.1e-2044.52PREDICTED: uncharacterized protein LOC109191648 [Ipomoea nil][more]
XP_031105706.12.7e-2045.39uncharacterized protein LOC116010433 [Ipomoea triloba][more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g004160.1Lcy03g004160.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016740 transferase activity