Lcy03g003780 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g003780
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	DUF4408 domain-containing protein
Location	Chr03: 17298232 .. 17298516 (+)
RNA-Seq Expression	Lcy03g003780
Synteny	Lcy03g003780

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGCCATTCGCGGTGGAAGAGGACGAAATAGAGGAACCAGCTAGCGAAGTCGAACGACGTCGTCCAATGACGATGAAAGCAGAGATTGCGGAACCGGAAATGGCGGCAGCTGACGACGACGAAGAGGAGGTGGATGTGAGAGTTGACGATTTCATAAACAAGTTCAAGCAGCAGTTGAAGTTGCAGAGGCTAGAATCTTTGTTGCGTTACAGAGACATGACTAAATGCAAAAAGAATAAAAAGGTCACTCTTTGTCTTCTTGTTTTGCCTCTGATTGGATTTTAG

mRNA sequence

GAGCCATTCGCGGTGGAAGAGGACGAAATAGAGGAACCAGCTAGCGAAGTCGAACGACGTCGTCCAATGACGATGAAAGCAGAGATTGCGGAACCGGAAATGGCGGCAGCTGACGACGACGAAGAGGAGGTGGATGTGAGAGTTGACGATTTCATAAACAAGTTCAAGCAGCAGTTGAAGTTGCAGAGGCTAGAATCTTTGTTGCGTTACAGAGACATGACTAAATGCAAAAAGAATAAAAAGGTCACTCTTTGTCTTCTTGTTTTGCCTCTGATTGGATTTTAG

Coding sequence (CDS)

GAGCCATTCGCGGTGGAAGAGGACGAAATAGAGGAACCAGCTAGCGAAGTCGAACGACGTCGTCCAATGACGATGAAAGCAGAGATTGCGGAACCGGAAATGGCGGCAGCTGACGACGACGAAGAGGAGGTGGATGTGAGAGTTGACGATTTCATAAACAAGTTCAAGCAGCAGTTGAAGTTGCAGAGGCTAGAATCTTTGTTGCGTTACAGAGACATGACTAAATGCAAAAAGAATAAAAAGGTCACTCTTTGTCTTCTTGTTTTGCCTCTGATTGGATTTTAG

Protein sequence

EPFAVEEDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLESLLRYRDMTKCKKNKKVTLCLLVLPLIGF

Homology

[Close]

BLAST of Lcy03g003780 vs. ExPASy Swiss-Prot
Match: F4K956 (Pathogen-associated molecular patterns-induced protein A70 OS=Arabidopsis thaliana OX=3702 GN=A70 PE=1 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 2.1e-08
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 3   FAVEEDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQ 62
           FA    E  E    +ERRRP T + E       +  D E+ VD +  DFINKFKQQLKLQ
Sbjct: 309 FAGSHAEAPETVESLERRRPDTTRVE----RSTSFGDGEDGVDAKASDFINKFKQQLKLQ 368

Query: 63  RLESLLRYRDMTK 76
           RL+S+LRY++M K
Sbjct: 369 RLDSILRYKEMLK 377

[Close]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL
Match: A0A6J1KNT3 (uncharacterized protein LOC111496949 OS=Cucurbita maxima OX=3661 GN=LOC111496949 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           +DE EE  SE+ERRRP T  AEI EP+     D+EEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QDETEESVSEIERRRPATTMAEIGEPKALETADEEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL
Match: A0A6J1ECG2 (uncharacterized protein LOC111432826 OS=Cucurbita moschata OX=3662 GN=LOC111432826 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 4.3e-17
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           ++E EE  SE+ERRRP T  AEI EP+   A D+EEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QEETEESVSEIERRRPATTMAEIGEPKTPEAADEEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL
Match: A0A6J1H824 (uncharacterized protein LOC111461335 OS=Cucurbita moschata OX=3662 GN=LOC111461335 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 1.8e-15
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 3   FAVEEDEIEEPASEVERRRPMTMKAEIAEPEM--AAADDDEEEVDVRVDDFINKFKQQLK 62
           F   + E  E  SE+ERRRP T +AEI EPE      DDD++EVDVR DDFINKFKQQLK
Sbjct: 150 FTTAQSETGELVSEIERRRPATARAEIGEPETQEGGGDDDDKEVDVRADDFINKFKQQLK 209

Query: 63  LQRLESLLRYRDMTKCKK 79
           LQRLESLLRYRDM K +K
Sbjct: 210 LQRLESLLRYRDMVKGEK 227

[Close]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL
Match: A0A6J1JED0 (uncharacterized protein LOC111485023 OS=Cucurbita maxima OX=3661 GN=LOC111485023 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.9e-15
Identity = 52/81 (64.20%), Postives = 58/81 (71.60%), Query Frame = 0


Query: 3   FAVEEDEIEEPASEVERRRPMTMKAEIAEPEM-----AAADDDEEEVDVRVDDFINKFKQ 62
           F   + E  E  SE+ERRRP T +AEI EPE         D+D++EVDVR DDFINKFKQ
Sbjct: 150 FTTAQSETGELVSEIERRRPSTARAEIGEPETQEGGGGGDDEDDKEVDVRADDFINKFKQ 209

Query: 63  QLKLQRLESLLRYRDMTKCKK 79
           QLKLQRLESLLRYRDM K KK
Sbjct: 210 QLKLQRLESLLRYRDMVKGKK 230

[Close]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL
Match: A0A6J1D2Q6 (uncharacterized protein LOC111016466 OS=Momordica charantia OX=3673 GN=LOC111016466 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.8e-14
Identity = 53/79 (67.09%), Postives = 59/79 (74.68%), Query Frame = 0


Query: 2   PF-AVEEDEIE-EPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQL 61
           PF A E  + E E AS +ERRRP T +AEI E E A  +++EEEVD R DDFINKFKQQL
Sbjct: 164 PFTATEPPQAETEEASVIERRRPATSRAEIGERETAPGEEEEEEVDARADDFINKFKQQL 223

Query: 62  KLQRLESLLRYRDMTKCKK 79
           KLQRLESLLRYRD  K KK
Sbjct: 224 KLQRLESLLRYRDAIKGKK 242

[Close]

BLAST of Lcy03g003780 vs. NCBI nr
Match: KAG6588047.1 (Pathogen-associated molecular patterns-induced protein A70, partial [Cucurbita argyrosperma subsp. sororia] >KAG7021940.1 hypothetical protein SDJN02_15668, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 100.1 bits (248), Expect = 1.0e-17
Identity = 55/73 (75.34%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           +DE EE  SE+ERRRP T  AEI EP+   A DDEEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QDETEESVSEIERRRPATTMAEIGEPKTPEAADDEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. NCBI nr
Match: XP_022925526.1 (uncharacterized protein LOC111432826 [Cucurbita moschata])

HSP 1 Score: 97.1 bits (240), Expect = 8.9e-17
Identity = 53/73 (72.60%), Postives = 59/73 (80.82%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           ++E EE  SE+ERRRP T  AEI EP+   A D+EEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QEETEESVSEIERRRPATTMAEIGEPKTPEAADEEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. NCBI nr
Match: XP_023003301.1 (uncharacterized protein LOC111496949 [Cucurbita maxima])

HSP 1 Score: 97.1 bits (240), Expect = 8.9e-17
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           +DE EE  SE+ERRRP T  AEI EP+     D+EEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QDETEESVSEIERRRPATTMAEIGEPKALETADEEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. NCBI nr
Match: XP_023530369.1 (uncharacterized protein LOC111792966 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 95.5 bits (236), Expect = 2.6e-16
Identity = 53/73 (72.60%), Postives = 58/73 (79.45%), Query Frame = 0


Query: 7   EDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLES 66
           +DE EE  SE+E RRP T  AEI EP+   A D+EEEVDVR DDFINKFKQQLKLQRLES
Sbjct: 156 QDETEESVSEIEWRRPATTMAEIGEPKTPEAADEEEEVDVRADDFINKFKQQLKLQRLES 215

Query: 67  LLRYRDMTKCKKN 80
           LLRYRDM K KK+
Sbjct: 216 LLRYRDMIKGKKH 228

[Close]

BLAST of Lcy03g003780 vs. NCBI nr
Match: XP_022960601.1 (uncharacterized protein LOC111461335 [Cucurbita moschata])

HSP 1 Score: 91.7 bits (226), Expect = 3.7e-15
Identity = 52/78 (66.67%), Postives = 58/78 (74.36%), Query Frame = 0


Query: 3   FAVEEDEIEEPASEVERRRPMTMKAEIAEPEM--AAADDDEEEVDVRVDDFINKFKQQLK 62
           F   + E  E  SE+ERRRP T +AEI EPE      DDD++EVDVR DDFINKFKQQLK
Sbjct: 150 FTTAQSETGELVSEIERRRPATARAEIGEPETQEGGGDDDDKEVDVRADDFINKFKQQLK 209

Query: 63  LQRLESLLRYRDMTKCKK 79
           LQRLESLLRYRDM K +K
Sbjct: 210 LQRLESLLRYRDMVKGEK 227

[Close]

BLAST of Lcy03g003780 vs. TAIR 10
Match: AT2G26110.1 (Protein of unknown function (DUF761) )

HSP 1 Score: 62.0 bits (149), Expect = 2.9e-10
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 0


Query: 2   PFA-VEEDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLK 61
           PF+  +EDEI      VE RRP T+K     P +   ++ +EEVD + DDFIN+FK QLK
Sbjct: 239 PFSHFQEDEI-----SVEARRPATVKV----PRVTTVEEADEEVDAKADDFINRFKHQLK 298

Query: 62  LQRLESLLRYRDMTKCKKNK 81
           LQR++S+ +Y++M K + +K
Sbjct: 299 LQRIDSITKYKEMVKKRNDK 309

[Close]

BLAST of Lcy03g003780 vs. TAIR 10
Match: AT4G26130.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G56980.1); Has 121 Blast hits to 116 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 113; Viruses - 0; Other Eukaryotes - 4 (source: NCBI BLink). )

HSP 1 Score: 60.1 bits (144), Expect = 1.1e-09
Identity = 37/67 (55.22%), Postives = 44/67 (65.67%), Query Frame = 0


Query: 9   EIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQRLESLL 68
           E EE    VE+RRP TM+    E   +  D  EE VD +  +FINKFKQQLKLQRL+S L
Sbjct: 221 EEEETVEAVEKRRPETMR---VERTTSIGDGGEEGVDDKASNFINKFKQQLKLQRLDSFL 280

Query: 69  RYRDMTK 76
           RYR+M K
Sbjct: 281 RYREMLK 284

[Close]

BLAST of Lcy03g003780 vs. TAIR 10
Match: AT5G56980.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G26130.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 59.7 bits (143), Expect = 1.5e-09
Identity = 36/73 (49.32%), Postives = 45/73 (61.64%), Query Frame = 0


Query: 3   FAVEEDEIEEPASEVERRRPMTMKAEIAEPEMAAADDDEEEVDVRVDDFINKFKQQLKLQ 62
           FA    E  E    +ERRRP T + E       +  D E+ VD +  DFINKFKQQLKLQ
Sbjct: 309 FAGSHAEAPETVESLERRRPDTTRVE----RSTSFGDGEDGVDAKASDFINKFKQQLKLQ 368

Query: 63  RLESLLRYRDMTK 76
           RL+S+LRY++M K
Sbjct: 369 RLDSILRYKEMLK 377

The following BLAST results are available for this feature:

BLAST of Lcy03g003780 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
F4K956	2.1e-08	49.32	Pathogen-associated molecular patterns-induced protein A70 OS=Arabidopsis thalia...	[more]

BLAST of Lcy03g003780 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1KNT3	4.3e-17	72.60	uncharacterized protein LOC111496949 OS=Cucurbita maxima OX=3661 GN=LOC111496949...	[more]
A0A6J1ECG2	4.3e-17	72.60	uncharacterized protein LOC111432826 OS=Cucurbita moschata OX=3662 GN=LOC1114328...	[more]
A0A6J1H824	1.8e-15	66.67	uncharacterized protein LOC111461335 OS=Cucurbita moschata OX=3662 GN=LOC1114613...	[more]
A0A6J1JED0	6.9e-15	64.20	uncharacterized protein LOC111485023 OS=Cucurbita maxima OX=3661 GN=LOC111485023...	[more]
A0A6J1D2Q6	5.8e-14	67.09	uncharacterized protein LOC111016466 OS=Momordica charantia OX=3673 GN=LOC111016...	[more]

BLAST of Lcy03g003780 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG6588047.1	1.0e-17	75.34	Pathogen-associated molecular patterns-induced protein A70, partial [Cucurbita a...	[more]
XP_022925526.1	8.9e-17	72.60	uncharacterized protein LOC111432826 [Cucurbita moschata]	[more]
XP_023003301.1	8.9e-17	72.60	uncharacterized protein LOC111496949 [Cucurbita maxima]	[more]
XP_023530369.1	2.6e-16	72.60	uncharacterized protein LOC111792966 [Cucurbita pepo subsp. pepo]	[more]
XP_022960601.1	3.7e-15	66.67	uncharacterized protein LOC111461335 [Cucurbita moschata]	[more]

BLAST of Lcy03g003780 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26110.1	2.9e-10	45.00	Protein of unknown function (DUF761)	[more]
AT4G26130.1	1.1e-09	55.22	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G56980.1	1.5e-09	49.32	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008480	Protein of unknown function DUF761, plant	PFAM	PF05553	DUF761	coord: 41..74 e-value: 1.1E-15 score: 56.9
None	No IPR available	PANTHER	PTHR33098:SF57	DUF4408 DOMAIN PROTEIN	coord: 14..75
None	No IPR available	PANTHER	PTHR33098	COTTON FIBER (DUF761)	coord: 14..75

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g003780.1	Lcy03g003780.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane