Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA
mRNA sequence
ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA
Coding sequence (CDS)
ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA
Protein sequence
MGNEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGDKFSSFDFFVISYKIRLLGGFLHTKSSFVITTCL
Homology
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match:
A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)
HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 0
Query: 6 DRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNT 65
D + W LE S F++K +F + K N +T +WK KKVK FLWS+AY+SLN
Sbjct: 195 DGLRWKLEASGFFSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNI 254
Query: 66 DDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVD 125
+K+QRK + +LSPS C LCL+++E DH+ LHCDF K WN + + L CL ++D
Sbjct: 255 QNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKID 314
Query: 126 DWLDEGLQAWNLKKKA 142
D + +GL + KA
Sbjct: 315 DGMKDGLTGGSFGGKA 330
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match:
A0A251RJG1 (zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G572100 PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
++ DR W+LE S FT KS K +WK SP KVK+F+W VA
Sbjct: 80 SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D VQRK LSP C LC E++DH+ LHC F W + +G + +
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 199
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
D+L W L K + GC + W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match:
M5XJT6 (zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa027084mg PE=4 SV=1)
HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
++ DR W+LE S FT KS K +WK SP KVK+F+W VA
Sbjct: 87 SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 146
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D VQRK LSP C LC E++DH+ LHC F W + +G + +
Sbjct: 147 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 206
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
D+L W L K + GC + W++W ERN R F D
Sbjct: 207 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 251
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match:
A0A5E4F2L4 (zf-RVT domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035011 PE=4 SV=1)
HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
++ DR W+LE S FT KS K +WK SP KVK+F+W VA
Sbjct: 80 SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D VQRK LSP C LC E++DH+ LHC F W + +G + +
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVILK 199
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
D+L W L K + GC + W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match:
A0A5E4FY07 (PREDICTED: ribonuclease H OS=Prunus dulcis OX=3755 GN=ALMOND_2B016778 PE=4 SV=1)
HSP 1 Score: 114.4 bits (285), Expect = 5.5e-22
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
+ +D+ W L+ S LF+ S + K + + ++WK +P+KVKI LW VA
Sbjct: 172 SRLDKRRWKLDHSGLFSCHSFCSFTPKDESKEDFSPYSQIWKSKTPRKVKILLWQVARGR 231
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D +QR LSP C LC D E +DH+ +HC + K W + G + +
Sbjct: 232 VNTCDLLQRHRPFMRLSPHWCALCKFDGETVDHLFIHCPYALKVWWLLLGEVIAVWVTPK 291
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
L + A +KKAKV+ GC +A IW LW E N R F D
Sbjct: 292 GCFKLLSCKIDALGREKKAKVLWGCLLQAMIWNLWMEHNRRIFDD 336
BLAST of Lcy03g003760 vs. NCBI nr
Match:
TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])
HSP 1 Score: 128.3 bits (321), Expect = 7.6e-26
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 0
Query: 6 DRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNT 65
D + W LE S F++K +F + K N +T +WK KKVK FLWS+AY+SLN
Sbjct: 195 DGLRWKLEASGFFSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNI 254
Query: 66 DDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVD 125
+K+QRK + +LSPS C LCL+++E DH+ LHCDF K WN + + L CL ++D
Sbjct: 255 QNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKID 314
Query: 126 DWLDEGLQAWNLKKKA 142
D + +GL + KA
Sbjct: 315 DGMKDGLTGGSFGGKA 330
BLAST of Lcy03g003760 vs. NCBI nr
Match:
ONI36148.1 (hypothetical protein PRUPE_1G572100 [Prunus persica])
HSP 1 Score: 116.3 bits (290), Expect = 3.0e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
++ DR W+LE S FT KS K +WK SP KVK+F+W VA
Sbjct: 80 SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D VQRK LSP C LC E++DH+ LHC F W + +G + +
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 199
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
D+L W L K + GC + W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244
BLAST of Lcy03g003760 vs. NCBI nr
Match:
VVA21329.1 (Hypothetical predicted protein [Prunus dulcis])
HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
++ DR W+LE S FT KS K +WK SP KVK+F+W VA
Sbjct: 80 SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D VQRK LSP C LC E++DH+ LHC F W + +G + +
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVILK 199
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
D+L W L K + GC + W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244
BLAST of Lcy03g003760 vs. NCBI nr
Match:
VVA32248.1 (PREDICTED: ribonuclease H [Prunus dulcis])
HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0
Query: 3 NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
+ +D+ W L+ S LF+ S + K + + ++WK +P+KVKI LW VA
Sbjct: 172 SRLDKRRWKLDHSGLFSCHSFCSFTPKDESKEDFSPYSQIWKSKTPRKVKILLWQVARGR 231
Query: 63 LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
+NT D +QR LSP C LC D E +DH+ +HC + K W + G + +
Sbjct: 232 VNTCDLLQRHRPFMRLSPHWCALCKFDGETVDHLFIHCPYALKVWWLLLGEVIAVWVTPK 291
Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
L + A +KKAKV+ GC +A IW LW E N R F D
Sbjct: 292 GCFKLLSCKIDALGREKKAKVLWGCLLQAMIWNLWMEHNRRIFDD 336
BLAST of Lcy03g003760 vs. NCBI nr
Match:
TQE05898.1 (hypothetical protein C1H46_008581 [Malus baccata])
HSP 1 Score: 113.2 bits (282), Expect = 2.5e-21
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 0
Query: 5 MDRITWNLEGSSLFTSKSLFQNSVGKSPKIN-MTTAGKLWKHNSPKKVKIFLWSVAYKSL 64
MD WNLE S LFT KS +++ + + ++ ++WK +P KVKI +W VA SL
Sbjct: 1 MDNRRWNLEASGLFTCKS-YRSLLSNNGIVHYYPPYSQIWKSKAPPKVKILVWLVATGSL 60
Query: 65 NTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNR 124
NT DK+QR+ LSP C LC E+++HI LHC + + W + + +S+ +
Sbjct: 61 NTCDKIQRRNPQMCLSPHWCSLCKTKEESVNHIFLHCSYSIQLWWKLFQEVKVSWVIPKG 120
Query: 125 VDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
+ L +A KK+K + GC A W +W ERN R F D
Sbjct: 121 CFELLSTNFKALGKGKKSKALWGCLVSAIFWNIWLERNKRIFED 163
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3E632 | 3.7e-26 | 42.65 | Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... | [more] |
A0A251RJG1 | 1.5e-22 | 35.76 | zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G572100 PE=... | [more] |
M5XJT6 | 1.5e-22 | 35.76 | zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_p... | [more] |
A0A5E4F2L4 | 1.9e-22 | 35.76 | zf-RVT domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035011 PE=... | [more] |
A0A5E4FY07 | 5.5e-22 | 35.15 | PREDICTED: ribonuclease H OS=Prunus dulcis OX=3755 GN=ALMOND_2B016778 PE=4 SV=1 | [more] |
Match Name | E-value | Identity | Description | |
TYK31299.1 | 7.6e-26 | 42.65 | protein FAM91A1 [Cucumis melo var. makuwa] | [more] |
ONI36148.1 | 3.0e-22 | 35.76 | hypothetical protein PRUPE_1G572100 [Prunus persica] | [more] |
VVA21329.1 | 3.9e-22 | 35.76 | Hypothetical predicted protein [Prunus dulcis] | [more] |
VVA32248.1 | 1.1e-21 | 35.15 | PREDICTED: ribonuclease H [Prunus dulcis] | [more] |
TQE05898.1 | 2.5e-21 | 36.59 | hypothetical protein C1H46_008581 [Malus baccata] | [more] |
Match Name | E-value | Identity | Description | |