Lcy03g003760 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g003760
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Descriptionzf-RVT domain-containing protein
LocationChr03: 17217940 .. 17218542 (-)
RNA-Seq ExpressionLcy03g003760
SyntenyLcy03g003760
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA

mRNA sequence

ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA

Coding sequence (CDS)

ATGGGCAACGAGATGGATAGAATCACATGGAACTTGGAAGGCTCGAGTCTCTTCACTAGTAAATCTTTGTTCCAAAATTCCGTTGGTAAATCCCCCAAGATCAATATGACCACAGCGGGCAAACTCTGGAAGCACAATTCCCCTAAGAAAGTGAAAATCTTCCTGTGGTCGGTGGCCTATAAAAGTTTGAATACGGATGACAAAGTGCAAAGGAAGCTTAAAAGCTGGACTCTATCCCCATCAGGTTGCAGATTGTGTCTAAGAGACAGTGAGAATATTGATCATATTCTCTTGCATTGTGATTTTGTCAAGAAGGCTTGGAACTTCGTTGCTGGAATGCTAGGATTATCCTTCTGTTTATCGAATAGAGTGGATGATTGGCTTGATGAAGGGCTACAAGCTTGGAATTTGAAAAAGAAGGCCAAGGTGATAGGGGGTTGTTCATTTAGAGCTACTATTTGGCTTTTGTGGAAGGAAAGAAATACGAGAACCTTTGGAGATAAGTTTTCTTCTTTCGATTTTTTTGTAATATCGTACAAAATACGGCTTCTTGGTGGATTTCTTCACACAAAAAGTTCTTTTGTAATTACAACTTGCTTATGA

Protein sequence

MGNEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGDKFSSFDFFVISYKIRLLGGFLHTKSSFVITTCL
Homology
BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match: A0A5D3E632 (Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G005970 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 3.7e-26
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 6   DRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNT 65
           D + W LE S  F++K +F      + K N +T   +WK    KKVK FLWS+AY+SLN 
Sbjct: 195 DGLRWKLEASGFFSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNI 254

Query: 66  DDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVD 125
            +K+QRK  + +LSPS C LCL+++E  DH+ LHCDF  K WN +  +  L  CL  ++D
Sbjct: 255 QNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKID 314

Query: 126 DWLDEGLQAWNLKKKA 142
           D + +GL   +   KA
Sbjct: 315 DGMKDGLTGGSFGGKA 330

BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match: A0A251RJG1 (zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G572100 PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           ++ DR  W+LE S  FT KS       K           +WK  SP KVK+F+W VA   
Sbjct: 80  SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D VQRK     LSP  C LC    E++DH+ LHC F    W  +   +G  + +  
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 199

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
              D+L      W L K    + GC   +  W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244

BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match: M5XJT6 (zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_ppa027084mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.5e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           ++ DR  W+LE S  FT KS       K           +WK  SP KVK+F+W VA   
Sbjct: 87  SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 146

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D VQRK     LSP  C LC    E++DH+ LHC F    W  +   +G  + +  
Sbjct: 147 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 206

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
              D+L      W L K    + GC   +  W++W ERN R F D
Sbjct: 207 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 251

BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match: A0A5E4F2L4 (zf-RVT domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035011 PE=4 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 1.9e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           ++ DR  W+LE S  FT KS       K           +WK  SP KVK+F+W VA   
Sbjct: 80  SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D VQRK     LSP  C LC    E++DH+ LHC F    W  +   +G  + +  
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVILK 199

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
              D+L      W L K    + GC   +  W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244

BLAST of Lcy03g003760 vs. ExPASy TrEMBL
Match: A0A5E4FY07 (PREDICTED: ribonuclease H OS=Prunus dulcis OX=3755 GN=ALMOND_2B016778 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.5e-22
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           + +D+  W L+ S LF+  S    +     K + +   ++WK  +P+KVKI LW VA   
Sbjct: 172 SRLDKRRWKLDHSGLFSCHSFCSFTPKDESKEDFSPYSQIWKSKTPRKVKILLWQVARGR 231

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D +QR      LSP  C LC  D E +DH+ +HC +  K W  + G +   +    
Sbjct: 232 VNTCDLLQRHRPFMRLSPHWCALCKFDGETVDHLFIHCPYALKVWWLLLGEVIAVWVTPK 291

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
                L   + A   +KKAKV+ GC  +A IW LW E N R F D
Sbjct: 292 GCFKLLSCKIDALGREKKAKVLWGCLLQAMIWNLWMEHNRRIFDD 336

BLAST of Lcy03g003760 vs. NCBI nr
Match: TYK31299.1 (protein FAM91A1 [Cucumis melo var. makuwa])

HSP 1 Score: 128.3 bits (321), Expect = 7.6e-26
Identity = 58/136 (42.65%), Postives = 82/136 (60.29%), Query Frame = 0

Query: 6   DRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKSLNT 65
           D + W LE S  F++K +F      + K N +T   +WK    KKVK FLWS+AY+SLN 
Sbjct: 195 DGLRWKLEASGFFSTKFIFSKMTMGAAKANFSTVNLIWKLKISKKVKFFLWSLAYRSLNI 254

Query: 66  DDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNRVD 125
            +K+QRK  + +LSPS C LCL+++E  DH+ LHCDF  K WN +  +  L  CL  ++D
Sbjct: 255 QNKLQRKFPNGSLSPSICYLCLKEAEAFDHLFLHCDFAFKGWNRIFDLFALDDCLPKKID 314

Query: 126 DWLDEGLQAWNLKKKA 142
           D + +GL   +   KA
Sbjct: 315 DGMKDGLTGGSFGGKA 330

BLAST of Lcy03g003760 vs. NCBI nr
Match: ONI36148.1 (hypothetical protein PRUPE_1G572100 [Prunus persica])

HSP 1 Score: 116.3 bits (290), Expect = 3.0e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           ++ DR  W+LE S  FT KS       K           +WK  SP KVK+F+W VA   
Sbjct: 80  SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D VQRK     LSP  C LC    E++DH+ LHC F    W  +   +G  + +  
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVIPK 199

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
              D+L      W L K    + GC   +  W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244

BLAST of Lcy03g003760 vs. NCBI nr
Match: VVA21329.1 (Hypothetical predicted protein [Prunus dulcis])

HSP 1 Score: 115.9 bits (289), Expect = 3.9e-22
Identity = 59/165 (35.76%), Postives = 78/165 (47.27%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           ++ DR  W+LE S  FT KS       K           +WK  SP KVK+F+W VA   
Sbjct: 80  SKRDRRRWDLEDSGSFTCKSFQSFLRNKGRAETFPPFSLVWKAKSPPKVKVFVWLVALGK 139

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D VQRK     LSP  C LC    E++DH+ LHC F    W  +   +G  + +  
Sbjct: 140 VNTSDLVQRKRPFMYLSPQWCVLCKLCEESVDHLFLHCPFSLSLWWLLWREVGTVWVILK 199

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
              D+L      W L K    + GC   +  W++W ERN R F D
Sbjct: 200 GCSDFLCSDFVVWGLGKLTSTLWGCLVHSVFWIIWMERNRRIFED 244

BLAST of Lcy03g003760 vs. NCBI nr
Match: VVA32248.1 (PREDICTED: ribonuclease H [Prunus dulcis])

HSP 1 Score: 114.4 bits (285), Expect = 1.1e-21
Identity = 58/165 (35.15%), Postives = 83/165 (50.30%), Query Frame = 0

Query: 3   NEMDRITWNLEGSSLFTSKSLFQNSVGKSPKINMTTAGKLWKHNSPKKVKIFLWSVAYKS 62
           + +D+  W L+ S LF+  S    +     K + +   ++WK  +P+KVKI LW VA   
Sbjct: 172 SRLDKRRWKLDHSGLFSCHSFCSFTPKDESKEDFSPYSQIWKSKTPRKVKILLWQVARGR 231

Query: 63  LNTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSN 122
           +NT D +QR      LSP  C LC  D E +DH+ +HC +  K W  + G +   +    
Sbjct: 232 VNTCDLLQRHRPFMRLSPHWCALCKFDGETVDHLFIHCPYALKVWWLLLGEVIAVWVTPK 291

Query: 123 RVDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
                L   + A   +KKAKV+ GC  +A IW LW E N R F D
Sbjct: 292 GCFKLLSCKIDALGREKKAKVLWGCLLQAMIWNLWMEHNRRIFDD 336

BLAST of Lcy03g003760 vs. NCBI nr
Match: TQE05898.1 (hypothetical protein C1H46_008581 [Malus baccata])

HSP 1 Score: 113.2 bits (282), Expect = 2.5e-21
Identity = 60/164 (36.59%), Postives = 88/164 (53.66%), Query Frame = 0

Query: 5   MDRITWNLEGSSLFTSKSLFQNSVGKSPKIN-MTTAGKLWKHNSPKKVKIFLWSVAYKSL 64
           MD   WNLE S LFT KS +++ +  +  ++      ++WK  +P KVKI +W VA  SL
Sbjct: 1   MDNRRWNLEASGLFTCKS-YRSLLSNNGIVHYYPPYSQIWKSKAPPKVKILVWLVATGSL 60

Query: 65  NTDDKVQRKLKSWTLSPSGCRLCLRDSENIDHILLHCDFVKKAWNFVAGMLGLSFCLSNR 124
           NT DK+QR+     LSP  C LC    E+++HI LHC +  + W  +   + +S+ +   
Sbjct: 61  NTCDKIQRRNPQMCLSPHWCSLCKTKEESVNHIFLHCSYSIQLWWKLFQEVKVSWVIPKG 120

Query: 125 VDDWLDEGLQAWNLKKKAKVIGGCSFRATIWLLWKERNTRTFGD 168
             + L    +A    KK+K + GC   A  W +W ERN R F D
Sbjct: 121 CFELLSTNFKALGKGKKSKALWGCLVSAIFWNIWLERNKRIFED 163

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3E6323.7e-2642.65Protein FAM91A1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G0059... [more]
A0A251RJG11.5e-2235.76zf-RVT domain-containing protein OS=Prunus persica OX=3760 GN=PRUPE_1G572100 PE=... [more]
M5XJT61.5e-2235.76zf-RVT domain-containing protein (Fragment) OS=Prunus persica OX=3760 GN=PRUPE_p... [more]
A0A5E4F2L41.9e-2235.76zf-RVT domain-containing protein OS=Prunus dulcis OX=3755 GN=ALMOND_2B035011 PE=... [more]
A0A5E4FY075.5e-2235.15PREDICTED: ribonuclease H OS=Prunus dulcis OX=3755 GN=ALMOND_2B016778 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
TYK31299.17.6e-2642.65protein FAM91A1 [Cucumis melo var. makuwa][more]
ONI36148.13.0e-2235.76hypothetical protein PRUPE_1G572100 [Prunus persica][more]
VVA21329.13.9e-2235.76Hypothetical predicted protein [Prunus dulcis][more]
VVA32248.11.1e-2135.15PREDICTED: ribonuclease H [Prunus dulcis][more]
TQE05898.12.5e-2136.59hypothetical protein C1H46_008581 [Malus baccata][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR026960Reverse transcriptase zinc-binding domainPFAMPF13966zf-RVTcoord: 18..107
e-value: 4.2E-16
score: 59.4

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g003760.1Lcy03g003760.1mRNA