Lcy03g003720 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g003720
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 17134219 .. 17134398 (+)
RNA-Seq ExpressionLcy03g003720
SyntenyLcy03g003720
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
GTTAGATTTGGAAGAAGATTGAAGAAGTTTAGGAAGAGTGCACTGGCAAGCATTACCGCTATCAAGATTGGAGTTTGTCAGATCAGAAGTTGCAAGTTTTTGTTTGGCAGAAAAGAAACCAACTTTGCCAATCTCCCTCCTTTGTTATCATACTATAATTTCTCAAGAAATTTTATATGA

mRNA sequence

GTTAGATTTGGAAGAAGATTGAAGAAGTTTAGGAAGAGTGCACTGGCAAGCATTACCGCTATCAAGATTGGAGTTTGTCAGATCAGAAGTTGCAAGTTTTTGTTTGGCAGAAAAGAAACCAACTTTGCCAATCTCCCTCCTTTGTTATCATACTATAATTTCTCAAGAAATTTTATATGA

Coding sequence (CDS)

GTTAGATTTGGAAGAAGATTGAAGAAGTTTAGGAAGAGTGCACTGGCAAGCATTACCGCTATCAAGATTGGAGTTTGTCAGATCAGAAGTTGCAAGTTTTTGTTTGGCAGAAAAGAAACCAACTTTGCCAATCTCCCTCCTTTGTTATCATACTATAATTTCTCAAGAAATTTTATATGA

Protein sequence

VRFGRRLKKFRKSALASITAIKIGVCQIRSCKFLFGRKETNFANLPPLLSYYNFSRNFI
Homology
BLAST of Lcy03g003720 vs. ExPASy TrEMBL
Match: A0A6J1KP23 (uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408 PE=4 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 4.5e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLKK +KSA+ASI  +KI V     CQIR+CK LFGRKETNFANLPPLLS
Sbjct: 57  VRFGRRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLS 111

BLAST of Lcy03g003720 vs. ExPASy TrEMBL
Match: A0A0A0KJX3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 2.7e-09
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLK+ +KSA+ SI+ +KIGV      QIR+CK LFGRK+TNFAN P LLS
Sbjct: 57  VRFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLS 111

BLAST of Lcy03g003720 vs. ExPASy TrEMBL
Match: A0A6J1CLW2 (uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012478 PE=4 SV=1)

HSP 1 Score: 68.2 bits (165), Expect = 1.3e-08
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGVC-----QIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLKK +KSALASI+A KIGV      Q+R+CK LFGRKE   ANL P LS
Sbjct: 57  VRFGRRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLS 111

BLAST of Lcy03g003720 vs. ExPASy TrEMBL
Match: A0A5D3CMA4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold255G006550 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFG+RLKK +KSA+ASI+ +K+GV      QIR+ K LFGRK+T FAN P LLS
Sbjct: 57  VRFGKRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLS 111

BLAST of Lcy03g003720 vs. ExPASy TrEMBL
Match: A0A1S3B0N9 (uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 1.1e-07
Identity = 34/55 (61.82%), Postives = 42/55 (76.36%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFG+RLKK +KSA+ASI+ +K+GV      QIR+ K LFGRK+T FAN P LLS
Sbjct: 57  VRFGKRLKKLKKSAMASISTLKVGVYKQVITQIRNYKSLFGRKQTKFANFPVLLS 111

BLAST of Lcy03g003720 vs. NCBI nr
Match: XP_023003962.1 (uncharacterized protein LOC111497408 [Cucurbita maxima])

HSP 1 Score: 79.7 bits (195), Expect = 9.2e-12
Identity = 41/55 (74.55%), Postives = 45/55 (81.82%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLKK +KSA+ASI  +KI V     CQIR+CK LFGRKETNFANLPPLLS
Sbjct: 57  VRFGRRLKKLKKSAMASICNVKISVYKQIICQIRNCKSLFGRKETNFANLPPLLS 111

BLAST of Lcy03g003720 vs. NCBI nr
Match: KGN49119.1 (hypothetical protein Csa_003853 [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 5.6e-09
Identity = 36/55 (65.45%), Postives = 43/55 (78.18%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGV-----CQIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLK+ +KSA+ SI+ +KIGV      QIR+CK LFGRK+TNFAN P LLS
Sbjct: 57  VRFGRRLKRLKKSAMGSISTLKIGVYKQVITQIRNCKSLFGRKQTNFANFPVLLS 111

BLAST of Lcy03g003720 vs. NCBI nr
Match: XP_022142336.1 (uncharacterized protein LOC111012478 [Momordica charantia])

HSP 1 Score: 68.2 bits (165), Expect = 2.8e-08
Identity = 37/55 (67.27%), Postives = 41/55 (74.55%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSALASITAIKIGVC-----QIRSCKFLFGRKETNFANLPPLLS 51
           VRFGRRLKK +KSALASI+A KIGV      Q+R+CK LFGRKE   ANL P LS
Sbjct: 57  VRFGRRLKKLKKSALASISAAKIGVYKQVIGQLRNCKSLFGRKEATIANLSPFLS 111

BLAST of Lcy03g003720 vs. NCBI nr
Match: KAG6594658.1 (hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 66.6 bits (161), Expect = 8.1e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSAL-ASITAIKIGVCQIRSCKFLFGRKETNFANLPPLL 50
           VRFGRRLKK +KS     I+  K  +CQIR+CK LFGRK TNFANLPPLL
Sbjct: 57  VRFGRRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 106

BLAST of Lcy03g003720 vs. NCBI nr
Match: KAG7026625.1 (hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 66.6 bits (161), Expect = 8.1e-08
Identity = 34/50 (68.00%), Postives = 38/50 (76.00%), Query Frame = 0

Query: 1   VRFGRRLKKFRKSAL-ASITAIKIGVCQIRSCKFLFGRKETNFANLPPLL 50
           VRFGRRLKK +KS     I+  K  +CQIR+CK LFGRK TNFANLPPLL
Sbjct: 57  VRFGRRLKKLKKSICNVKISVYKQIICQIRNCKSLFGRKATNFANLPPLL 106

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A6J1KP234.5e-1274.55uncharacterized protein LOC111497408 OS=Cucurbita maxima OX=3661 GN=LOC111497408... [more]
A0A0A0KJX32.7e-0965.45Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G514800 PE=4 SV=1[more]
A0A6J1CLW21.3e-0867.27uncharacterized protein LOC111012478 OS=Momordica charantia OX=3673 GN=LOC111012... [more]
A0A5D3CMA41.1e-0761.82Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B0N91.1e-0761.82uncharacterized protein LOC103484604 OS=Cucumis melo OX=3656 GN=LOC103484604 PE=... [more]
Match NameE-valueIdentityDescription
XP_023003962.19.2e-1274.55uncharacterized protein LOC111497408 [Cucurbita maxima][more]
KGN49119.15.6e-0965.45hypothetical protein Csa_003853 [Cucumis sativus][more]
XP_022142336.12.8e-0867.27uncharacterized protein LOC111012478 [Momordica charantia][more]
KAG6594658.18.1e-0868.00hypothetical protein SDJN03_11211, partial [Cucurbita argyrosperma subsp. sorori... [more]
KAG7026625.18.1e-0868.00hypothetical protein SDJN02_10627, partial [Cucurbita argyrosperma subsp. argyro... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g003720.1Lcy03g003720.1mRNA