Lcy03g002750 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g002750
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionCCHC-type domain-containing protein
LocationChr03: 10216730 .. 10217442 (+)
RNA-Seq ExpressionLcy03g002750
SyntenyLcy03g002750
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGAAGATATGGAATCAAGAACATACCATTATCGATAAGGTGGGATTCAATATTTTTATTTGTAAGTTCAATAACACGAAGATCAAGGGATGGATCTTGGACTCCGGACCATGGTTCTACGACAAAGCTATGCTTTTATTCGAGGAACCTAAGGCGGGAGTCAGCTGTGAGGGCATGGAATTCAGGTATGTTTCTCTGTGGACTCATTTTCATAAGTTACCGTATGTTTGTTTTTCCAGGACATCGGCCGAAGGTATTGGAAATCTATTAGGAAAGGTGGAAAAAGTGGATATTCAGGAGGATGCAGATCCATCATGGGGTGTTCTTTACGTATTAAAATTCAAATCGATGTTCATATCCCGCTGAAGAGAGGTATATTCCTGAAATCAGGGAGTAAGGGGGAGGACAAGTGGATTCCGGTTACGTATGAAAAGCTACCGGATTTCTGTTACAGCTGTGGGTCTTTGGGACATACGATTAAAGAGTGTGAAGAAGTTCTGGGGCCAAAAGACAGGGAGTTACGGTATGGTGCATGGCTGAGGGAACCTACCAAATTATGGAACTCTGAAGGTAACTCCTCGGGGTGGATTGCTTATGGCCGTGGAAGGGCAAATAGCTGGAGCGGTGGTAGAGGGCGGGGAAGGATGGGATTTCACGATAGTAATGAGGAAGAGGAGATGGTGCAGCCACCAAACAACCACACCCAGTAG

mRNA sequence

ATGCCGAAGATATGGAATCAAGAACATACCATTATCGATAAGGACATCGGCCGAAGGTATTGGAAATCTATTAGGAAAGGTGGAAAAAGTGGATATTCAGGAGGATGCAGATCCATCATGGGGTGTTCTTTACGTATTAAAATTCAAATCGATGTTCATATCCCGCTGAAGAGAGGTATATTCCTGAAATCAGGGAGTAAGGGGGAGGACAAGTGGATTCCGGTTACGTATGAAAAGCTACCGGATTTCTGTTACAGCTGTGGGTCTTTGGGACATACGATTAAAGAGTGTGAAGAAGTTCTGGGGCCAAAAGACAGGGAGTTACGGTATGGTGCATGGCTGAGGGAACCTACCAAATTATGGAACTCTGAAGGTAACTCCTCGGGGTGGATTGCTTATGGCCGTGGAAGGGCAAATAGCTGGAGCGGTGGTAGAGGGCGGGGAAGGATGGGATTTCACGATAGTAATGAGGAAGAGGAGATGGTGCAGCCACCAAACAACCACACCCAGTAG

Coding sequence (CDS)

ATGCCGAAGATATGGAATCAAGAACATACCATTATCGATAAGGACATCGGCCGAAGGTATTGGAAATCTATTAGGAAAGGTGGAAAAAGTGGATATTCAGGAGGATGCAGATCCATCATGGGGTGTTCTTTACGTATTAAAATTCAAATCGATGTTCATATCCCGCTGAAGAGAGGTATATTCCTGAAATCAGGGAGTAAGGGGGAGGACAAGTGGATTCCGGTTACGTATGAAAAGCTACCGGATTTCTGTTACAGCTGTGGGTCTTTGGGACATACGATTAAAGAGTGTGAAGAAGTTCTGGGGCCAAAAGACAGGGAGTTACGGTATGGTGCATGGCTGAGGGAACCTACCAAATTATGGAACTCTGAAGGTAACTCCTCGGGGTGGATTGCTTATGGCCGTGGAAGGGCAAATAGCTGGAGCGGTGGTAGAGGGCGGGGAAGGATGGGATTTCACGATAGTAATGAGGAAGAGGAGATGGTGCAGCCACCAAACAACCACACCCAGTAG

Protein sequence

MPKIWNQEHTIIDKDIGRRYWKSIRKGGKSGYSGGCRSIMGCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEEVLGPKDRELRYGAWLREPTKLWNSEGNSSGWIAYGRGRANSWSGGRGRGRMGFHDSNEEEEMVQPPNNHTQ
Homology
BLAST of Lcy03g002750 vs. ExPASy TrEMBL
Match: A0A1Z5S941 (CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347001 PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 9.5e-15
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 38  SIMGCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKEC 97
           S +G  LRIK++ID+  PL RGI L+     +D W P+ YE LP+FCY CG LGH  KEC
Sbjct: 27  SAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKEC 86

Query: 98  EEVLGPKDRELRYGAWLREPTKLWNSEGNS-SGWIAYGRGRANSWSGGRGRGRMGF 153
           +  +  +    ++G WLR     W  +G+    W   G   +  +   R  G++ F
Sbjct: 87  DSCVEEEVGFKQFGDWLRVTPTRWKGQGDQRQRWSEGGSSGSGKFGRSRESGKLSF 142

BLAST of Lcy03g002750 vs. ExPASy TrEMBL
Match: A0A6J1D765 (uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017902 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 2.3e-13
Identity = 54/123 (43.90%), Postives = 72/123 (58.54%), Query Frame = 0

Query: 41  GCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEE- 100
           G  +R++++IDV  PL+RGI LK+ S G+D W P+ YEKLPDFCY CG +GH+ +ECE+ 
Sbjct: 165 GPFIRVRVKIDVSKPLRRGIKLKN-SDGKDIWCPLRYEKLPDFCYECGKIGHSGRECEQR 224

Query: 101 --VLGPKDRELRYGAWLREPTKLWNSEGNSSG---WIAYGRGRANSWSGGR-GRGRMGFH 157
             V+     E +YG WLR  T L  S  +      W     GR +  +GGR GRG     
Sbjct: 225 SKVVTTNSPE-QYGDWLR-ATLLKKSVSHPEEEVFWRGGRFGRGHQVNGGRGGRGDWRRR 284

BLAST of Lcy03g002750 vs. ExPASy TrEMBL
Match: A0A5C7HBH6 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_019455 PE=4 SV=1)

HSP 1 Score: 84.0 bits (206), Expect = 6.8e-13
Identity = 44/119 (36.97%), Postives = 64/119 (53.78%), Query Frame = 0

Query: 5   WNQEHTIIDKDIGRRY--WKSIRKGGKSGYSGGCRSIMGCSLRIKIQIDVHIPLKRGIFL 64
           W Q H I    + RR   W + + G         R   G  LR+K++ID+  PLKR + L
Sbjct: 94  WIQIHEIPIMCMNRRIAKWLAEQIGEVVEIPSESRECWGRFLRVKVRIDISKPLKRWLRL 153

Query: 65  KSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEEVLGPKD----RELRYGAWLREP 118
           K G   E   + + YE++P+FC++CG LGH IKEC +    KD      ++YG+WL+ P
Sbjct: 154 KLGKDDEVTVVSLKYERVPEFCFACGRLGHGIKECLDEKAMKDALDGSIIKYGSWLKAP 212

BLAST of Lcy03g002750 vs. ExPASy TrEMBL
Match: A0A5C7IWT1 (CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_002128 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.2e-12
Identity = 41/119 (34.45%), Postives = 65/119 (54.62%), Query Frame = 0

Query: 5   WNQEHTIIDKDIGRRY--WKSIRKGGKSGYSGGCRSIMGCSLRIKIQIDVHIPLKRGIFL 64
           W Q H +    + RR   W + + G     S   R   G  +R+K++ID+  PLKR +  
Sbjct: 90  WIQIHEVPIMCMNRRIARWLADQLGEVVEISSESRECWGKYMRVKVRIDIWKPLKRWLRF 149

Query: 65  KSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEEVLGPKD----RELRYGAWLREP 118
           K G+  E   + + YE+LPDFC++CG +GH IKEC + +  ++       +YG+WL+ P
Sbjct: 150 KPGATDEIIMVGLKYERLPDFCFACGRIGHGIKECLDEVARQEALDGSPTKYGSWLKAP 208

BLAST of Lcy03g002750 vs. ExPASy TrEMBL
Match: A0A803LW54 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.4e-12
Identity = 39/86 (45.35%), Postives = 57/86 (66.28%), Query Frame = 0

Query: 40  MGCS--LRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKEC 99
           +GC+  LRIK+ +DV+ PL+RG+FL  G + + +W+ V YE+L +FC+ CG L HT KEC
Sbjct: 41  LGCNDCLRIKVLVDVNKPLRRGLFLAMG-QNKPRWVDVKYERLAEFCFFCGRLDHTEKEC 100

Query: 100 ---EEVLGPKDREL-RYGAWLREPTK 120
              E+  G  D+ + +YG WLR   K
Sbjct: 101 QFKEQAKGVVDKMVYQYGPWLRASPK 125

BLAST of Lcy03g002750 vs. NCBI nr
Match: KAG0532780.1 (hypothetical protein BDA96_04G136500, partial [Sorghum bicolor])

HSP 1 Score: 93.6 bits (231), Expect = 1.8e-15
Identity = 45/121 (37.19%), Postives = 67/121 (55.37%), Query Frame = 0

Query: 44  LRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEEVLGP 103
           LRIK++ID+  PL+RGI ++     ED W P+ YE +P+FCYSCG LGH  KEC+  +  
Sbjct: 9   LRIKVKIDIRKPLRRGILVEGEDGEEDCWCPIKYEFIPNFCYSCGCLGHVEKECDSCVEL 68

Query: 104 KDRELRYGAWLREPTKLWNSEGNSSGWIAYGRGRANSWSGGR--GRGRMGFHDSNEEEEM 163
           +    ++G W+R     W  +G+          + N WS GR  G G++G    N +  +
Sbjct: 69  EAGCRQFGEWMRVTPSRWKGQGD----------QRNKWSEGRNSGSGKVGRSKENSKTSL 119

BLAST of Lcy03g002750 vs. NCBI nr
Match: OQU92454.1 (hypothetical protein SORBI_3001G347001 [Sorghum bicolor])

HSP 1 Score: 90.1 bits (222), Expect = 2.0e-14
Identity = 43/116 (37.07%), Postives = 62/116 (53.45%), Query Frame = 0

Query: 38  SIMGCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKEC 97
           S +G  LRIK++ID+  PL RGI L+     +D W P+ YE LP+FCY CG LGH  KEC
Sbjct: 27  SAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKEC 86

Query: 98  EEVLGPKDRELRYGAWLREPTKLWNSEGNS-SGWIAYGRGRANSWSGGRGRGRMGF 153
           +  +  +    ++G WLR     W  +G+    W   G   +  +   R  G++ F
Sbjct: 87  DSCVEEEVGFKQFGDWLRVTPTRWKGQGDQRQRWSEGGSSGSGKFGRSRESGKLSF 142

BLAST of Lcy03g002750 vs. NCBI nr
Match: KAG0550818.1 (hypothetical protein BDA96_01G370300 [Sorghum bicolor])

HSP 1 Score: 88.6 bits (218), Expect = 5.7e-14
Identity = 44/116 (37.93%), Postives = 61/116 (52.59%), Query Frame = 0

Query: 38  SIMGCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKEC 97
           S +G  LRIK++ID+  PL RGI L+     +D W P+ YE LP+FCY CG LGH  KEC
Sbjct: 27  SAVGGFLRIKVKIDIRKPLMRGILLERAEGEDDCWCPIRYEYLPNFCYGCGLLGHVEKEC 86

Query: 98  EEVLGPKDRELRYGAWLREPTKLWNSEGNS-SGWIAYGRGRANSWSGGRGRGRMGF 153
           +  +     E  +G WLR     W  +G+    W   G   +  +   R  G++ F
Sbjct: 87  DSCV-----EEEFGDWLRVTPTRWKGQGDQRQRWSEGGSSGSGKFGRSRESGKLSF 137

BLAST of Lcy03g002750 vs. NCBI nr
Match: KAE8817564.1 (hypothetical protein D1007_04663 [Hordeum vulgare])

HSP 1 Score: 87.4 bits (215), Expect = 1.3e-13
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = 0

Query: 44  LRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKECEEVLGP 103
           LR+K++ID++ PL RG+ ++ G KG+++W P  YE LP FCY+CG +GH  KEC  V   
Sbjct: 159 LRVKVRIDINKPLMRGMIMQFGEKGKEEWCPFEYEYLPKFCYTCGIIGHEAKEC-AVKSA 218

Query: 104 KDRELRYGAWLR---------EPTKLWNSEGNS-----SGWIAYGRGRANS 141
           +  + +YG WLR           T+ WN EG S     S  +    GRA S
Sbjct: 219 RGEKQQYGPWLRAYIPKKSVSSETRRWN-EGRSGQSYRSSGVLIRDGRAGS 267

BLAST of Lcy03g002750 vs. NCBI nr
Match: XP_024642377.1 (uncharacterized protein LOC112422874 [Medicago truncatula])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-13
Identity = 40/86 (46.51%), Postives = 55/86 (63.95%), Query Frame = 0

Query: 38  SIMGCSLRIKIQIDVHIPLKRGIFLKSGSKGEDKWIPVTYEKLPDFCYSCGSLGHTIKEC 97
           +IMG S+RIK+ ID+  PLKRGI LK   +    WI   YE+LP+FCY CG +GH +KEC
Sbjct: 147 NIMGKSIRIKVDIDLRNPLKRGIVLKYQKR--SLWIFFKYERLPNFCYKCGRIGHQMKEC 206

Query: 98  EEVLGP--------KDRELRYGAWLR 116
           EE  G         ++++  YG+W+R
Sbjct: 207 EEETGQDGEGYTDVEEQDQAYGSWMR 230

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A1Z5S9419.5e-1537.07CCHC-type domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G347... [more]
A0A6J1D7652.3e-1343.90uncharacterized protein LOC111017902 OS=Momordica charantia OX=3673 GN=LOC111017... [more]
A0A5C7HBH66.8e-1336.97CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_01945... [more]
A0A5C7IWT11.2e-1234.45CCHC-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_00212... [more]
A0A803LW543.4e-1245.35Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
KAG0532780.11.8e-1537.19hypothetical protein BDA96_04G136500, partial [Sorghum bicolor][more]
OQU92454.12.0e-1437.07hypothetical protein SORBI_3001G347001 [Sorghum bicolor][more]
KAG0550818.15.7e-1437.93hypothetical protein BDA96_01G370300 [Sorghum bicolor][more]
KAE8817564.11.3e-1340.54hypothetical protein D1007_04663 [Hordeum vulgare][more]
XP_024642377.11.7e-1346.51uncharacterized protein LOC112422874 [Medicago truncatula][more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR025836Zinc knuckle CX2CX4HX4CPFAMPF14392zf-CCHC_4coord: 50..98
e-value: 1.7E-12
score: 46.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 143..170
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 84..99
score: 9.619753

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g002750.1Lcy03g002750.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding