Lcy03g002640 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g002640
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	nuclear transcription factor Y subunit B-4-like
Location	Chr03: 9876287 .. 9876688 (+)
RNA-Seq Expression	Lcy03g002640
Synteny	Lcy03g002640

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGACAATTGGGAAAGGCTTCAGCTGCCAAGTGCTAATGTTGGCAGACTGATGAAGAAGATACTTCCCCAAACATCCAAGATTTCAAAAGAAGCCAAACAAACAATGCAAGAATGTGCAACAGAATTCATCAGCTTTATCACAAGTGAAGCAGCAGAAAAGTGTCACAAAGAGAATCGTAGAACTCTCAATGGAGATGATATTTATTGGGCTTTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCCGCCAAGTACTTGCTCAAGTTTAGAGAAGCTGAGAGAATCAAGAGTTGTAACAAACCCAGTAGATTTCAAGAACGGGAAAACGACGACGACAACAACGACGACGAATCTTATCGGGCTAACAAGGGTGAAAGTTCTCGAACAAATTAG

mRNA sequence

ATGGAAGACAATTGGGAAAGGCTTCAGCTGCCAAGTGCTAATGTTGGCAGACTGATGAAGAAGATACTTCCCCAAACATCCAAGATTTCAAAAGAAGCCAAACAAACAATGCAAGAATGTGCAACAGAATTCATCAGCTTTATCACAAGTGAAGCAGCAGAAAAGTGTCACAAAGAGAATCGTAGAACTCTCAATGGAGATGATATTTATTGGGCTTTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCCGCCAAGTACTTGCTCAAGTTTAGAGAAGCTGAGAGAATCAAGAGTTGTAACAAACCCAGTAGATTTCAAGAACGGGAAAACGACGACGACAACAACGACGACGAATCTTATCGGGCTAACAAGGGTGAAAGTTCTCGAACAAATTAG

Coding sequence (CDS)

ATGGAAGACAATTGGGAAAGGCTTCAGCTGCCAAGTGCTAATGTTGGCAGACTGATGAAGAAGATACTTCCCCAAACATCCAAGATTTCAAAAGAAGCCAAACAAACAATGCAAGAATGTGCAACAGAATTCATCAGCTTTATCACAAGTGAAGCAGCAGAAAAGTGTCACAAAGAGAATCGTAGAACTCTCAATGGAGATGATATTTATTGGGCTTTTGGTTCTCTTGGCTTAGATAATTATGCTGAGGCTTCCGCCAAGTACTTGCTCAAGTTTAGAGAAGCTGAGAGAATCAAGAGTTGTAACAAACCCAGTAGATTTCAAGAACGGGAAAACGACGACGACAACAACGACGACGAATCTTATCGGGCTAACAAGGGTGAAAGTTCTCGAACAAATTAG

Protein sequence

MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNNDDESYRANKGESSRTN

Homology

[Close]

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot
Match: O04027 (Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NFYB4 PE=1 SV=1)

HSP 1 Score: 136.0 bits (341), Expect = 3.2e-31
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANVGRLMK+ILP  +KISKEAKQT+QECATEFISF+T EA+EKCH+ENR+T+NGDDI
Sbjct: 8   LPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDI 67

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQERENDDDNNDDESYRANK 127
           +WA  +LGLDNYA+A  ++L K+REAER ++  NK S     E + +   D   ++ K
Sbjct: 68  WWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSGNEKETNTRSDVQNQSTK 125

[Close]

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot
Match: O82248 (Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NFYB5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 1.4e-26
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANVGR+MK ILP  +K+SKEAK+TMQEC +EFISF+T EA++KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAE 97
            WA  +LG D+YA    KYL ++R  E
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLE 142

[Close]

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot
Match: Q9FGJ3 (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NFYB2 PE=1 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 1.0e-24
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISF+T EA++KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAE 97
            WA  +LG ++Y E    YL +FRE E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot
Match: Q32KW0 (Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-24
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 8   LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGD 67
           + LP ANV R+MK  +PQT KI+K+AK+ +QEC +EFISFITSEA+E+CH+E R+T+NG+
Sbjct: 57  IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 116

Query: 68  DIYWAFGSLGLDNYAEASAKYLLKFREA 96
           DI +A  +LG D+Y E    YL KFREA
Sbjct: 117 DILFAMSTLGFDSYVEPLKLYLQKFREA 144

[Close]

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot
Match: P25207 (Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=2 SV=2)

HSP 1 Score: 113.2 bits (282), Expect = 2.2e-24
Identity = 52/88 (59.09%), Postives = 69/88 (78.41%), Query Frame = 0


Query: 8   LQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGD 67
           + LP ANV R+MK  +PQT KI+K+AK+ +QEC +EFISFITSEA+E+CH+E R+T+NG+
Sbjct: 55  IYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGE 114

Query: 68  DIYWAFGSLGLDNYAEASAKYLLKFREA 96
           DI +A  +LG D+Y E    YL KFREA
Sbjct: 115 DILFAMSTLGFDSYVEPLKLYLQKFREA 142

[Close]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL
Match: A0A6J1CXT8 (nuclear transcription factor Y subunit B-4-like OS=Momordica charantia OX=3673 GN=LOC111015264 PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 2.5e-47
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 2   EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENR 61
           +DNWE+LQLPSANVGRLMKKI+PQTSKISKEAKQTMQECATEFISF+TSEAAEKC++ENR
Sbjct: 3   DDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENR 62

Query: 62  RTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQ---ERENDDDNND 121
           RTLNG+DIYWAFG+LGLDNYA+A+AKYLL +R+A+ +K  NK   FQ   E  N DDN D
Sbjct: 63  RTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHNKHCGFQQQGEHNNHDDNGD 122

Query: 122 DES--YRANKGESSRTN 134
           D+   Y ANKGESS+TN
Sbjct: 123 DDGKFYLANKGESSQTN 139

[Close]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL
Match: A0A1S3BQ87 (Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492519 PE=3 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 8.7e-40
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISF+TSEAA+KCH EN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNNDDE 120
           RRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+ +K   FQ  ++  +++D  
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHDSF 120

Query: 121 SYRANKG 128
            +  ++G
Sbjct: 121 FFEVSQG 127

[Close]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL
Match: A0A5D3CFV4 (Beta-galactosidase 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003870 PE=3 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.5e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISF+TSEAA+KCH EN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNND 119
           RRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+ +K   FQ  ++  ++++
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHE 118

[Close]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL
Match: A0A6J1HDY6 (nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN=LOC111461996 PE=3 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 8.2e-38
Identity = 90/129 (69.77%), Postives = 103/129 (79.84%), Query Frame = 0


Query: 2   EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENR 61
           E+N + LQLP ANVGRLMKKILPQ +KISKEAK TMQECATEFISF+TSEAAEKCHK+NR
Sbjct: 3   ENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 62

Query: 62  RTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNNDDES 121
           RTLNGDDI WAFGS GLDNYAEASAKYLLK+R+ ERI +  K +   E++  D   + E 
Sbjct: 63  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHD--QELEF 122

Query: 122 YRANKGESS 131
           Y    GE+S
Sbjct: 123 YHGEIGETS 129

[Close]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL
Match: A0A0A0LZ17 (CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G569530 PE=3 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.8e-37
Identity = 79/103 (76.70%), Postives = 91/103 (88.35%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANV R+MKKI+P+  KISKEAK+ MQECA EFI+F+TSEAA++C  EN
Sbjct: 1   MGENWESLQLPIANVERIMKKIVPEKGKISKEAKKRMQECANEFINFVTSEAAQRCQNEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNK 104
           RRTLNGDDIYWAF SLGLDNYAEAS+KYLLKFREAERIK+ +K
Sbjct: 61  RRTLNGDDIYWAFDSLGLDNYAEASSKYLLKFREAERIKASDK 103

[Close]

BLAST of Lcy03g002640 vs. NCBI nr
Match: XP_022145916.1 (nuclear transcription factor Y subunit B-4-like [Momordica charantia])

HSP 1 Score: 198.0 bits (502), Expect = 5.2e-47
Identity = 103/137 (75.18%), Postives = 119/137 (86.86%), Query Frame = 0


Query: 2   EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENR 61
           +DNWE+LQLPSANVGRLMKKI+PQTSKISKEAKQTMQECATEFISF+TSEAAEKC++ENR
Sbjct: 3   DDNWEKLQLPSANVGRLMKKIIPQTSKISKEAKQTMQECATEFISFVTSEAAEKCNRENR 62

Query: 62  RTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQ---ERENDDDNND 121
           RTLNG+DIYWAFG+LGLDNYA+A+AKYLL +R+A+ +K  NK   FQ   E  N DDN D
Sbjct: 63  RTLNGEDIYWAFGALGLDNYADATAKYLLNYRDAQTMKIHNKHCGFQQQGEHNNHDDNGD 122

Query: 122 DES--YRANKGESSRTN 134
           D+   Y ANKGESS+TN
Sbjct: 123 DDGKFYLANKGESSQTN 139

[Close]

BLAST of Lcy03g002640 vs. NCBI nr
Match: XP_038880507.1 (nuclear transcription factor Y subunit B-4-like [Benincasa hispida])

HSP 1 Score: 181.8 bits (460), Expect = 3.9e-42
Identity = 92/121 (76.03%), Postives = 104/121 (85.95%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANVGR+MKKILPQ +KISKEAK+TMQECA+EFISF+ SEAAEKCHKEN
Sbjct: 1   MGENWENLQLPIANVGRIMKKILPQKAKISKEAKETMQECASEFISFVASEAAEKCHKEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQ--ERENDDDNND 120
           RRTLNGDDI WA GS GLDNYAE SAKYLLKFREAERIK+ NK   FQ   ++ +DD+ND
Sbjct: 61  RRTLNGDDICWALGSCGLDNYAEVSAKYLLKFREAERIKTSNKAITFQHDHQQGEDDDND 120

[Close]

BLAST of Lcy03g002640 vs. NCBI nr
Match: XP_008451143.1 (PREDICTED: beta-galactosidase 15-like [Cucumis melo])

HSP 1 Score: 172.9 bits (437), Expect = 1.8e-39
Identity = 87/127 (68.50%), Postives = 104/127 (81.89%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISF+TSEAA+KCH EN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNNDDE 120
           RRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+ +K   FQ  ++  +++D  
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHDSF 120

Query: 121 SYRANKG 128
            +  ++G
Sbjct: 121 FFEVSQG 127

[Close]

BLAST of Lcy03g002640 vs. NCBI nr
Match: KAA0050888.1 (beta-galactosidase 15-like [Cucumis melo var. makuwa] >TYK10240.1 beta-galactosidase 15-like [Cucumis melo var. makuwa])

HSP 1 Score: 171.4 bits (433), Expect = 5.2e-39
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 1   MEDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKEN 60
           M +NWE LQLP ANV R+MKKI+PQ  KISKEAK+TMQECA EFISF+TSEAA+KCH EN
Sbjct: 1   MGENWESLQLPIANVERIMKKIIPQKGKISKEAKKTMQECANEFISFVTSEAAQKCHNEN 60

Query: 61  RRTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNND 119
           RRTLNGDDIYWAFGSLGLDNYAEAS+  LLKFREAERIK+ +K   FQ  ++  ++++
Sbjct: 61  RRTLNGDDIYWAFGSLGLDNYAEASSMLLLKFREAERIKASDKAITFQHHQHGVEDHE 118

[Close]

BLAST of Lcy03g002640 vs. NCBI nr
Match: KAG6590402.1 (Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 166.8 bits (421), Expect = 1.3e-37
Identity = 90/131 (68.70%), Postives = 103/131 (78.63%), Query Frame = 0


Query: 2   EDNWERLQLPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENR 61
           E+N + LQLP ANVGRLMKKILPQ +KISKEAK TMQECATEFISF+TSEAAEKCHK+NR
Sbjct: 3   ENNGDELQLPIANVGRLMKKILPQKAKISKEAKATMQECATEFISFVTSEAAEKCHKDNR 62

Query: 62  RTLNGDDIYWAFGSLGLDNYAEASAKYLLKFREAERIKSCNKPSRFQERENDDDNNDD-- 121
           RTLNGDDI WAFGS GLDNYAEASAKYLLK+R+ ERI +  K +   E++  D   +   
Sbjct: 63  RTLNGDDICWAFGSFGLDNYAEASAKYLLKYRDVERINAQFKTNIAPEQQKHDQEQEQEL 122

Query: 122 ESYRANKGESS 131
           E Y    GE+S
Sbjct: 123 EFYHGEIGETS 133

[Close]

BLAST of Lcy03g002640 vs. TAIR 10
Match: AT1G09030.1 (nuclear factor Y, subunit B4 )

HSP 1 Score: 136.0 bits (341), Expect = 2.3e-32
Identity = 71/118 (60.17%), Postives = 91/118 (77.12%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANVGRLMK+ILP  +KISKEAKQT+QECATEFISF+T EA+EKCH+ENR+T+NGDDI
Sbjct: 8   LPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTVNGDDI 67

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAERIKS-CNKPSRFQERENDDDNNDDESYRANK 127
           +WA  +LGLDNYA+A  ++L K+REAER ++  NK S     E + +   D   ++ K
Sbjct: 68  WWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSGNEKETNTRSDVQNQSTK 125

[Close]

BLAST of Lcy03g002640 vs. TAIR 10
Match: AT2G47810.1 (nuclear factor Y, subunit B5 )

HSP 1 Score: 120.6 bits (301), Expect = 9.9e-28
Identity = 55/87 (63.22%), Postives = 69/87 (79.31%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANVGR+MK ILP  +K+SKEAK+TMQEC +EFISF+T EA++KCHKE R+T+NGDDI
Sbjct: 56  LPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEASDKCHKEKRKTVNGDDI 115

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAE 97
            WA  +LG D+YA    KYL ++R  E
Sbjct: 116 CWAMANLGFDDYAAQLKKYLHRYRVLE 142

[Close]

BLAST of Lcy03g002640 vs. TAIR 10
Match: AT5G47640.1 (nuclear factor Y, subunit B2 )

HSP 1 Score: 114.4 bits (285), Expect = 7.1e-26
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANV R+MKK LP  +KISK+AK+TMQEC +EFISF+T EA++KC KE R+T+NGDD+
Sbjct: 32  LPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDL 91

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAE 97
            WA  +LG ++Y E    YL +FRE E
Sbjct: 92  LWAMTTLGFEDYVEPLKVYLQRFREIE 118

[Close]

BLAST of Lcy03g002640 vs. TAIR 10
Match: AT4G14540.1 (nuclear factor Y, subunit B3 )

HSP 1 Score: 112.5 bits (280), Expect = 2.7e-25
Identity = 52/91 (57.14%), Postives = 69/91 (75.82%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP ANV R+MKK LP  +KISK+AK+T+QEC +EFISFIT EA++KC +E R+T+NGDD+
Sbjct: 26  LPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDL 85

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAERIKS 101
            WA  +LG ++Y E    YL K+RE E  K+
Sbjct: 86  LWAMTTLGFEDYVEPLKVYLQKYREVEGEKT 116

[Close]

BLAST of Lcy03g002640 vs. TAIR 10
Match: AT2G38880.2 (nuclear factor Y, subunit B1 )

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-24
Identity = 50/87 (57.47%), Postives = 65/87 (74.71%), Query Frame = 0


Query: 10  LPSANVGRLMKKILPQTSKISKEAKQTMQECATEFISFITSEAAEKCHKENRRTLNGDDI 69
           LP AN+ R+MKK LP   KI K+AK T+QEC +EFISFITSEA++KC KE R+T+NGDD+
Sbjct: 26  LPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDL 85

Query: 70  YWAFGSLGLDNYAEASAKYLLKFREAE 97
            WA  +LG ++Y E    YL ++RE E
Sbjct: 86  LWAMATLGFEDYLEPLKIYLARYRELE 112

The following BLAST results are available for this feature:

BLAST of Lcy03g002640 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O04027	3.2e-31	60.17	Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
O82248	1.4e-26	63.22	Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q9FGJ3	1.0e-24	59.77	Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana OX=3702 GN=NF...	[more]
Q32KW0	2.2e-24	59.09	Nuclear transcription factor Y subunit beta OS=Bos taurus OX=9913 GN=NFYB PE=2 S...	[more]
P25207	2.2e-24	59.09	Nuclear transcription factor Y subunit beta OS=Gallus gallus OX=9031 GN=NFYB PE=...	[more]

BLAST of Lcy03g002640 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1CXT8	2.5e-47	75.18	nuclear transcription factor Y subunit B-4-like OS=Momordica charantia OX=3673 G...	[more]
A0A1S3BQ87	8.7e-40	68.50	Beta-galactosidase OS=Cucumis melo OX=3656 GN=LOC103492519 PE=3 SV=1	[more]
A0A5D3CFV4	2.5e-39	72.03	Beta-galactosidase 15-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A6J1HDY6	8.2e-38	69.77	nuclear transcription factor Y subunit B-4-like OS=Cucurbita moschata OX=3662 GN...	[more]
A0A0A0LZ17	1.8e-37	76.70	CBFD_NFYB_HMF domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G5695...	[more]

BLAST of Lcy03g002640 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022145916.1	5.2e-47	75.18	nuclear transcription factor Y subunit B-4-like [Momordica charantia]	[more]
XP_038880507.1	3.9e-42	76.03	nuclear transcription factor Y subunit B-4-like [Benincasa hispida]	[more]
XP_008451143.1	1.8e-39	68.50	PREDICTED: beta-galactosidase 15-like [Cucumis melo]	[more]
KAA0050888.1	5.2e-39	72.03	beta-galactosidase 15-like [Cucumis melo var. makuwa] >TYK10240.1 beta-galactosi...	[more]
KAG6590402.1	1.3e-37	68.70	Nuclear transcription factor Y subunit B-4, partial [Cucurbita argyrosperma subs...	[more]

BLAST of Lcy03g002640 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G09030.1	2.3e-32	60.17	nuclear factor Y, subunit B4	[more]
AT2G47810.1	9.9e-28	63.22	nuclear factor Y, subunit B5	[more]
AT5G47640.1	7.1e-26	59.77	nuclear factor Y, subunit B2	[more]
AT4G14540.1	2.7e-25	57.14	nuclear factor Y, subunit B3	[more]
AT2G38880.2	1.0e-24	57.47	nuclear factor Y, subunit B1	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR00615	CCAATSUBUNTA	coord: 37..55 score: 48.8 coord: 56..74 score: 27.27 coord: 75..93 score: 32.18
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..133
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..126
None	No IPR available	PANTHER	PTHR11064:SF83	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-4	coord: 3..125
IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain	PFAM	PF00808	CBFD_NFYB_HMF	coord: 9..72 e-value: 1.9E-24 score: 85.7
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 1..133 e-value: 8.9E-38 score: 131.2
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 8..121
IPR027113	Transcription factor NFYB/HAP3	PANTHER	PTHR11064	CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED	coord: 3..125

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g002640.1	Lcy03g002640.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0005975	carbohydrate metabolic process
biological_process	GO:0045944	positive regulation of transcription by RNA polymerase II
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0048046	apoplast
cellular_component	GO:0016602	CCAAT-binding factor complex
molecular_function	GO:0004565	beta-galactosidase activity
molecular_function	GO:0030246	carbohydrate binding
molecular_function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific
molecular_function	GO:0046982	protein heterodimerization activity
molecular_function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding