Lcy03g002630 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g002630
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	CACTA en-spm transposon protein
Location	Chr03: 9821107 .. 9821262 (+)
RNA-Seq Expression	Lcy03g002630
Synteny	Lcy03g002630

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGATCTGCGGGATGCTCCTATTCCAGAAGGGTTTCAACCACTCAGTAAACCTCTCATATGTGAGACGGTTTTGGGTAAACGACCCGGCCATGTTAAAGGCATGGGTTGGGGACCTAAGCCATCTCGTTCAAACACGAGTGGCAACACATCA

mRNA sequence

ATGGGAGATCTGCGGGATGCTCCTATTCCAGAAGGGTTTCAACCACTCAGTAAACCTCTCATATGTGAGACGGTTTTGGGTAAACGACCCGGCCATGTTAAAGGCATGGGTTGGGGACCTAAGCCATCTCGTTCAAACACGAGTGGCAACACATCA

Coding sequence (CDS)

ATGGGAGATCTGCGGGATGCTCCTATTCCAGAAGGGTTTCAACCACTCAGTAAACCTCTCATATGTGAGACGGTTTTGGGTAAACGACCCGGCCATGTTAAAGGCATGGGTTGGGGACCTAAGCCATCTCGTTCAAACACGAGTGGCAACACATCA

Protein sequence

MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS

Homology

[Close]

BLAST of Lcy03g002630 vs. ExPASy TrEMBL
Match: A0A5D3CKF7 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold828G00240 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.5e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLGKRPG+ KG+GWGPKP    T+  +S
Sbjct: 309 MLELQSQPIPEGSQPLSEDEICDQVLGKRPGYSKGLGWGPKPKARRTASASS 360

[Close]

BLAST of Lcy03g002630 vs. ExPASy TrEMBL
Match: A0A5A7T4P0 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1161G00310 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 255 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 306

[Close]

BLAST of Lcy03g002630 vs. ExPASy TrEMBL
Match: A0A5D3BMQ0 (Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold118G00250 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1  MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
          M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 1  MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 52

[Close]

BLAST of Lcy03g002630 vs. ExPASy TrEMBL
Match: A0A5D3C6Z8 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00370 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 254 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 305

[Close]

BLAST of Lcy03g002630 vs. ExPASy TrEMBL
Match: A0A5D3CG61 (CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold107G00520 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 3.4e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 254 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 305

[Close]

BLAST of Lcy03g002630 vs. NCBI nr
Match: TYK11654.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 67.8 bits (164), Expect = 3.2e-08
Identity = 30/52 (57.69%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLGKRPG+ KG+GWGPKP    T+  +S
Sbjct: 309 MLELQSQPIPEGSQPLSEDEICDQVLGKRPGYSKGLGWGPKPKARRTASASS 360

[Close]

BLAST of Lcy03g002630 vs. NCBI nr
Match: KAA0036425.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa] >KAA0049153.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa] >KAA0050864.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa] >KAA0051889.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa] >KAA0060883.1 CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 255 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 306

[Close]

BLAST of Lcy03g002630 vs. NCBI nr
Match: TYK22506.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 407 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 458

[Close]

BLAST of Lcy03g002630 vs. NCBI nr
Match: TYK11890.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 49  MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 100

[Close]

BLAST of Lcy03g002630 vs. NCBI nr
Match: KAA0040239.1 (CACTA en-spm transposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 66.6 bits (161), Expect = 7.1e-08
Identity = 29/52 (55.77%), Postives = 38/52 (73.08%), Query Frame = 0


Query: 1   MGDLRDAPIPEGFQPLSKPLICETVLGKRPGHVKGMGWGPKPSRSNTSGNTS 53
           M +L+  PIPEG QPLS+  IC+ VLG+RPG+ KG+GWGPKP    T+  +S
Sbjct: 351 MLELQSQPIPEGSQPLSEDEICDQVLGRRPGYSKGLGWGPKPKARRTASASS 402

The following BLAST results are available for this feature:

BLAST of Lcy03g002630 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g002630 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3CKF7	1.5e-08	57.69	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7T4P0	3.4e-08	55.77	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3BMQ0	3.4e-08	55.77	Zinc finger protein ZPR1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=...	[more]
A0A5D3C6Z8	3.4e-08	55.77	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5D3CG61	3.4e-08	55.77	CACTA en-spm transposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]

BLAST of Lcy03g002630 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK11654.1	3.2e-08	57.69	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0036425.1	7.1e-08	55.77	CACTA en-spm transposon protein [Cucumis melo var. makuwa] >KAA0049153.1 CACTA e...	[more]
TYK22506.1	7.1e-08	55.77	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
TYK11890.1	7.1e-08	55.77	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]
KAA0040239.1	7.1e-08	55.77	CACTA en-spm transposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Lcy03g002630 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 29..52

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g002630.1	Lcy03g002630.1	mRNA