Lcy03g002190 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g002190
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	Retrotransposon protein
Location	Chr03: 7935200 .. 7936013 (+)
RNA-Seq Expression	Lcy03g002190
Synteny	Lcy03g002190

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGGTGCAGATAAACAACAAAAGCACATCTGGACGAGGCAAGAGGAGGCACGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGGTACGATCATTAGTCATTCATTGATGTAACTCATGTACAATATCGTTGATAAAACACTCTTCAATACATGCAGTCACACTCGGCCGCGAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTTTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGGAACAGGCAGACAGCACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGAATTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCCTTGATATTATGAGGCAGTCAGTGACTATGCAGGAGGCACAGTTCACTAAGATCGCTGACTGGCCGGAAGCCCAAGACGCGTGA

mRNA sequence

ATGGCAGGTGCAGATAAACAACAAAAGCACATCTGGACGAGGCAAGAGGAGGCACGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGTCACACTCGGCCGCGAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTTTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGGAACAGGCAGACAGCACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGAATTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCCTTGATATTATGAGGCAGTCAGTGACTATGCAGGAGGCACAGTTCACTAAGATCGCTGACTGGCCGGAAGCCCAAGACGCGTGA

Coding sequence (CDS)

ATGGCAGGTGCAGATAAACAACAAAAGCACATCTGGACGAGGCAAGAGGAGGCACGGTTGGTGGAATCCCTCGTGGAGCTCGTCCACGAAGGTGGATGGAGAGGGGACAACGGGACCTTCAGGGCCGGATACCTAGCCCGACTGAAGCGGATGATAAAAGATAAAATGCCGACCTGCACCATAGAGTCAACGTCCGTAATAGACTGCAAGGTGCGGTCCTTGAAACGGCAATACAGTGCCATCTCGGAGATGCTGGGTCCGGGCTGCAGTGGATTTGGTTGGAATGATGAGTTTAAATGCATCCAGGCTGAGAGGGAGGTATATGATGCATGGGTGAAGTCACACTCGGCCGCGAAGGGGCTGCTGAACAAGCCATTTCCTCATTACGAGGATCTTGCTTTCGTTTTCGGCAAAGACAGGGCGAGTGGCGGCGCGTGTAATGTTCCAGCGGAACAGGCAGACAGCACCCACGGGGACGACGAGGGTGATCAGAATGTCCAGGCGGAACAGGATTGTTACGTCCCCGCCCCTCCAGACATTAATCTGGCCGCGGACATGGAATTCGAGGACGTCCCCATCACACCGACAAGCCGACCAAGCACTGCAGGGTCCTCCCAGAGTCGAAAGCGGAGCAGAGCTTCATATGAAGCTGAAGCCCTTGATATTATGAGGCAGTCAGTGACTATGCAGGAGGCACAGTTCACTAAGATCGCTGACTGGCCGGAAGCCCAAGACGCGTGA

Protein sequence

MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCTIESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKGLLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGDDEGDQNVQAEQDCYVPAPPDINLAADMEFEDVPITPTSRPSTAGSSQSRKRSRASYEAEALDIMRQSVTMQEAQFTKIADWPEAQDA

Homology

[Close]

BLAST of Lcy03g002190 vs. ExPASy TrEMBL
Match: A0A5A7TRV1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold153G00290 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLREIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. ExPASy TrEMBL
Match: A0A5D3DCZ1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G00020 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. ExPASy TrEMBL
Match: A0A5A7SRU1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00100 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. ExPASy TrEMBL
Match: A0A5A7TN44 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold46G003610 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.4e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. ExPASy TrEMBL
Match: A0A5D3CWL2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G00640 PE=4 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 1.8e-54
Identity = 115/250 (46.00%), Postives = 160/250 (64.00%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA WP
Sbjct: 241 EQLREIAQWP 239

[Close]

BLAST of Lcy03g002190 vs. NCBI nr
Match: KAA0032766.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. NCBI nr
Match: KAA0044610.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. NCBI nr
Match: KAA0033744.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0046274.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049705.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0057135.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLREIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. NCBI nr
Match: TYK21395.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 223.0 bits (567), Expect = 2.8e-54
Identity = 115/250 (46.00%), Postives = 161/250 (64.40%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRKRGSQRDFELEAIHL---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA+WP
Sbjct: 241 EQLRQIAEWP 239

[Close]

BLAST of Lcy03g002190 vs. NCBI nr
Match: KAA0031555.1 (retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0043921.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0047622.1 retrotransposon protein [Cucumis melo var. makuwa] >KAA0049406.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 222.6 bits (566), Expect = 3.7e-54
Identity = 115/250 (46.00%), Postives = 160/250 (64.00%), Query Frame = 0


Query: 1   MAGADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIKDKMPTCT 60
           M+ +++  +H+WTR+EE  LVE L+ELV  GGW+ DNGTFR GYLA+L RM+ +K+P C 
Sbjct: 1   MSTSNRAPRHVWTREEEGTLVECLMELVSMGGWKSDNGTFRPGYLAQLVRMMAEKLPGCQ 60

Query: 61  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 120
           + +T+VIDC++++LKR + AI+EM GP CSGFGWNDE KCI AE+E++D WV+SH AAKG
Sbjct: 61  VRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNWVRSHPAAKG 120

Query: 121 LLNKPFPHYEDLAFVFGKDRASGGACNVPAEQADSTHGD-----DEGDQNVQAEQDCYVP 180
           LLNKPFP+Y++L +VFG+DRA+G      A+   +  G      D GD N          
Sbjct: 121 LLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNED-------- 180

Query: 181 APPDINLAADMEFEDVPITPTSRPS---TAGSSQSRKR-SRASYEAEALDIMRQSVTMQE 240
            PP  +   D+  +DV  +  SR S   T  S   RKR S+  +E EA+ +   ++    
Sbjct: 181 FPPVYSQGVDISQDDVRASRPSRASDGRTGSSGSKRKRGSQRDFELEAIHV---ALDQTN 239

Query: 241 AQFTKIADWP 242
            Q  +IA WP
Sbjct: 241 EQLREIAQWP 239

[Close]

BLAST of Lcy03g002190 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 26/89 (29.21%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 66  VIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKGLLNKP 125
           V+  + +SL+RQ++AI  +L     GF W++E + + A+  V+  ++K+H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPHYEDLAFVFGKDRASGGACNVPAEQAD 155
            P+Y+DL  + G        C V  +  D
Sbjct: 296 IPYYKDLCVLCGDSGIEENECFVAMDWFD 322

[Close]

BLAST of Lcy03g002190 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-08
Identity = 26/89 (29.21%), Postives = 49/89 (55.06%), Query Frame = 0


Query: 66  VIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKGLLNKP 125
           V+  + +SL+RQ++AI  +L     GF W++E + + A+  V+  ++K+H  A+  + +P
Sbjct: 236 VLKNRYKSLRRQFNAIKSIL--RSDGFAWDNERQMVTADNNVWQDYIKAHRDARQFMTRP 295

Query: 126 FPHYEDLAFVFGKDRASGGACNVPAEQAD 155
            P+Y+DL  + G        C V  +  D
Sbjct: 296 IPYYKDLCVLCGDSGIEENECFVAMDWFD 322

[Close]

BLAST of Lcy03g002190 vs. TAIR 10
Match: AT1G30140.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G27260.1); Has 313 Blast hits to 256 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 8; Plants - 295; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink). )

HSP 1 Score: 49.7 bits (117), Expect = 4.0e-06
Identity = 53/219 (24.20%), Postives = 95/219 (43.38%), Query Frame = 0


Query: 3   GADKQQKHIWTRQEEARLVESLVELVHEGGWRGDNGTFRAGYLARLKRMIK--DKMPTCT 62
           G +K   + WT  E     + L+EL+ +  WR  +G    G L    +++   +K   C 
Sbjct: 8   GKEKGPYNQWTPDE----TDVLIELIRQ-NWRDSSGII--GKLTVESKLLPALNKRLGCN 67

Query: 63  IESTSVIDCKVRSLKRQYSAISEMLGPGCSGFGWNDEFKCIQAEREVYDAWVKSHSAAKG 122
               + +  +++ LK  Y +  + L    SGFGW+ E K   A  EV+  ++K+H   K 
Sbjct: 68  KNHKNYMS-RLKFLKNLYQSYLD-LKRFSSGFGWDPETKKFTAPDEVWRDYLKAHPNHKH 127

Query: 123 LLNKPFPHYEDLAFVFGKDRASG----GACNVPAEQADSTHGDDEGDQNVQAEQDCYVPA 182
           +  +   H+EDL  +FG   A+G    G  +    +  +     +G + V  +++     
Sbjct: 128 MQTESIDHFEDLQIIFGDVVATGSFAVGMSDSTCPRIYTVGERSQGKETVNQDENIEEVY 187

Query: 183 PPDINLAADMEFEDVPITPTSRPSTAGSSQS---RKRSR 213
                  +  E+   P   T  P+T G S+    RKR++
Sbjct: 188 EFSFQHPSSAEYSTSPF--TFDPTTRGRSEKLLPRKRTK 215

The following BLAST results are available for this feature:

BLAST of Lcy03g002190 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g002190 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TRV1	1.4e-54	46.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DCZ1	1.4e-54	46.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7SRU1	1.4e-54	46.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TN44	1.4e-54	46.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3CWL2	1.8e-54	46.00	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Lcy03g002190 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0032766.1	2.8e-54	46.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0044610.1	2.8e-54	46.00	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0033744.1	2.8e-54	46.00	retrotransposon protein [Cucumis melo var. makuwa] >KAA0044866.1 retrotransposon...	[more]
TYK21395.1	2.8e-54	46.00	retrotransposon protein [Cucumis melo var. makuwa] >TYK24245.1 retrotransposon p...	[more]
KAA0031555.1	3.7e-54	46.00	retrotransposon protein [Cucumis melo var. makuwa] >KAA0036352.1 retrotransposon...	[more]

BLAST of Lcy03g002190 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	1.1e-08	29.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	1.1e-08	29.21	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT1G30140.1	4.0e-06	24.20	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024752	Myb/SANT-like domain	PFAM	PF12776	Myb_DNA-bind_3	coord: 12..110 e-value: 5.4E-7 score: 30.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 192..215
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 194..210
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 5..214
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 5..214

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g002190.1	Lcy03g002190.1	mRNA