Lcy03g002090 (gene) Sponge gourd (P93075) v1

Overview


Name	Lcy03g002090
Type	gene
Organism	Luffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
Description	pectinesterase inhibitor-like
Location	Chr03: 6964482 .. 6964958 (+)
RNA-Seq Expression	Lcy03g002090
Synteny	Lcy03g002090

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGAAATCCAATTCCAATTCCAATCTTGTTTTCCTTTGTTGTCTTGTTTTCTCCAGTTTCGTTCTTTCGAATGCAAATTCTGCACCACCAAATGACGTCGCATCGAGCATCTGCCCAAAAACCAAAAACGTATCTTTATGCTGGAGTTTGTTGAAACCCATGGGCAACATAGACGCTCGAAAGGTGGCCAATTACACCCTTAGCCTTGCCTATACAAGTGCCAGCGAATGTCTCGACCACGCACGGAGGCTAGAGGCAGTCGAGACGGCGAATCCAGAACTTAAAAAACGATATTCGCGGTGCTTAAGGGAGTTGGACTTTGTGGTGTGGGACATAGAACGAGCCAAAGAAGCGTTGGTTAATGGTGGCAATATTCTCCTCCTAGAAGGTACTGTCGGCACCGAGACTGCCACTGACAACTGTCTAAATGTTGGGAATTGGGAGTGCAACCAAAGTCCCACATTGGCTAGATAA

mRNA sequence

ATGGCGAAATCCAATTCCAATTCCAATCTTGTTTTCCTTTGTTGTCTTGTTTTCTCCAGTTTCGTTCTTTCGAATGCAAATTCTGCACCACCAAATGACGTCGCATCGAGCATCTGCCCAAAAACCAAAAACGTATCTTTATGCTGGAGTTTGTTGAAACCCATGGGCAACATAGACGCTCGAAAGGTGGCCAATTACACCCTTAGCCTTGCCTATACAAGTGCCAGCGAATGTCTCGACCACGCACGGAGGCTAGAGGCAGTCGAGACGGCGAATCCAGAACTTAAAAAACGATATTCGCGGTGCTTAAGGGAGTTGGACTTTGTGGTGTGGGACATAGAACGAGCCAAAGAAGCGTTGGTTAATGGTGGCAATATTCTCCTCCTAGAAGGTACTGTCGGCACCGAGACTGCCACTGACAACTGTCTAAATGTTGGGAATTGGGAGTGCAACCAAAGTCCCACATTGGCTAGATAA

Coding sequence (CDS)

ATGGCGAAATCCAATTCCAATTCCAATCTTGTTTTCCTTTGTTGTCTTGTTTTCTCCAGTTTCGTTCTTTCGAATGCAAATTCTGCACCACCAAATGACGTCGCATCGAGCATCTGCCCAAAAACCAAAAACGTATCTTTATGCTGGAGTTTGTTGAAACCCATGGGCAACATAGACGCTCGAAAGGTGGCCAATTACACCCTTAGCCTTGCCTATACAAGTGCCAGCGAATGTCTCGACCACGCACGGAGGCTAGAGGCAGTCGAGACGGCGAATCCAGAACTTAAAAAACGATATTCGCGGTGCTTAAGGGAGTTGGACTTTGTGGTGTGGGACATAGAACGAGCCAAAGAAGCGTTGGTTAATGGTGGCAATATTCTCCTCCTAGAAGGTACTGTCGGCACCGAGACTGCCACTGACAACTGTCTAAATGTTGGGAATTGGGAGTGCAACCAAAGTCCCACATTGGCTAGATAA

Protein sequence

MAKSNSNSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILLLEGTVGTETATDNCLNVGNWECNQSPTLAR

Homology

[Close]

BLAST of Lcy03g002090 vs. ExPASy TrEMBL
Match: A0A6J1H4N5 (pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111460015 PE=4 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 8.0e-24
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 13  LCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTLSLAY 72
           LCC++F   VLS+A++   ND  S+ICP T N  LCW +LK + N+D+  + NYTL+   
Sbjct: 11  LCCVLFFGVVLSHADTTLQNDTISTICPNTSNPLLCWQMLKSVRNLDSVSLTNYTLNFTR 70

Query: 73  TSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILLLEGT 132
           TSA ECL +A+ LEA ET N ELKKRYS C + +   V DIE A+E +  G  I+    T
Sbjct: 71  TSAIECLHYAQGLEAKETVNLELKKRYSYCSKSIKSTVTDIEVAQEYMGYGSYIVADLNT 130

Query: 133 VGTETATDNCLNVGN 148
           +G  T + +CLN  N
Sbjct: 131 MGAFTDSGDCLNSFN 145

[Close]

BLAST of Lcy03g002090 vs. ExPASy TrEMBL
Match: A0A0A0KHY0 (PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G307370 PE=4 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 2.6e-22
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 7   NSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDAR--KVA 66
           +S L+FL  L F S VL +A++  PN + ++ICPKT+N + C ++LKP+G  DA   KVA
Sbjct: 18  SSILIFLFGLFFFSVVLLHADTGSPNVLTTTICPKTRNSTFCKTVLKPVGKSDAALLKVA 77

Query: 67  NYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGG 126
           NYTL+ A+T+  E L HA+RL A E  +P LK+RYS C R  DFV   +E A EAL  GG
Sbjct: 78  NYTLTFAHTTTVEGLHHAQRL-ATEATDPLLKQRYSECSRRFDFVTKGLEEAIEALAKGG 137

Query: 127 NILLLEGTVGTETATDNCLNV 146
            I L   T       D C+N+
Sbjct: 138 YIPLSHATGAAVVEADRCVNM 157

[Close]

BLAST of Lcy03g002090 vs. ExPASy TrEMBL
Match: A0A5D3BT93 (Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00330 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   NSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDAR--KVA 66
           +S L+FL  L F S VL +A++  PN + S+ICPKT+N +LC ++LKP+G  DA   KVA
Sbjct: 19  SSILIFLFGLFFFSVVLLHADTGSPNVITSTICPKTRNSTLCKTVLKPVGKSDAALLKVA 78

Query: 67  NYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGG 126
           NY+L+LA+T+  E L HA+RL A +  +P LK+RYS C R  D +   +E A  AL  G 
Sbjct: 79  NYSLTLAHTTTVEGLQHAQRL-ANDATDPLLKQRYSECSRRFDSMTKGLEEAIAALAKGE 138

Query: 127 NILLLEGTVGTETATDNCLNV 146
            I L   T       D C+++
Sbjct: 139 YIPLSHATGAAVVDADGCVDM 158

[Close]

BLAST of Lcy03g002090 vs. ExPASy TrEMBL
Match: A0A1S3C7Z4 (pectinesterase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103498015 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 3.5e-19
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   NSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDAR--KVA 66
           +S L+FL  L F S VL +A++  PN + S+ICPKT+N +LC ++LKP+G  DA   KVA
Sbjct: 19  SSILIFLFGLFFFSVVLLHADTGSPNVITSTICPKTRNSTLCKTVLKPVGKSDAALLKVA 78

Query: 67  NYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGG 126
           NY+L+LA+T+  E L HA+RL A +  +P LK+RYS C R  D +   +E A  AL  G 
Sbjct: 79  NYSLTLAHTTTVEGLQHAQRL-ANDATDPLLKQRYSECSRRFDSMTKGLEEAIAALAKGE 138

Query: 127 NILLLEGTVGTETATDNCLNV 146
            I L   T       D C+++
Sbjct: 139 YIPLSHATGAAVVDADGCVDM 158

[Close]

BLAST of Lcy03g002090 vs. ExPASy TrEMBL
Match: A0A5D3BTG4 (Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold46G00350 PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 5.9e-19
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 10  LVFLCCLVFSSFVLSNANS-APPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTL 69
           LVF+C  +FS+ V S AN+  P NDVASSICPKT+N S C  +LK  G+ D + +A YTL
Sbjct: 17  LVFVCSFLFSNVVSSRANTITPSNDVASSICPKTRNPSFCVDVLKSAGSTDLKVLATYTL 76

Query: 70  SLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILL 129
           +L  T+A + L+  + L A  T NP+LK +Y  C    + VV DIE AK  L +G    +
Sbjct: 77  NLTNTNAEKSLNLVKSL-AATTTNPQLKNQYLSCYESYEEVVGDIEIAKSNLASGDFNGV 136

Query: 130 LEGTVGTETATDNC 143
              T G  TA D+C
Sbjct: 137 NIATSGIMTAVDDC 149

[Close]

BLAST of Lcy03g002090 vs. NCBI nr
Match: XP_023548317.1 (pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 120.9 bits (302), Expect = 9.6e-24
Identity = 62/135 (45.93%), Postives = 86/135 (63.70%), Query Frame = 0


Query: 13  LCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTLSLAY 72
           LCC++F   VLS+A++ P ND  S+ICP+T+N SLC  LLKP+ N++A  +ANY + LA+
Sbjct: 11  LCCVLFFGIVLSHADTTPQNDTVSTICPQTRNPSLCRQLLKPVSNLNATNMANYMIDLAH 70

Query: 73  TSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILLLEGT 132
           T+A EC    +RL+A ET N ELKKRYS C + +D  V  IE  K+ +     I L    
Sbjct: 71  TNAVECRRRVQRLKAEETTNLELKKRYSECWQCIDSSVSAIESGKQYMEYKNYIALTIQI 130

Query: 133 VGTETATDNCLNVGN 148
           +G  + TD CL+  N
Sbjct: 131 IGAGSHTDQCLDTFN 145

[Close]

BLAST of Lcy03g002090 vs. NCBI nr
Match: XP_022958860.1 (pectinesterase inhibitor-like [Cucurbita moschata])

HSP 1 Score: 120.2 bits (300), Expect = 1.6e-23
Identity = 63/135 (46.67%), Postives = 85/135 (62.96%), Query Frame = 0


Query: 13  LCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTLSLAY 72
           LCC++F   VLS+A++   ND  S+ICP T N  LCW +LK + N+D+  + NYTL+   
Sbjct: 11  LCCVLFFGVVLSHADTTLQNDTISTICPNTSNPLLCWQMLKSVRNLDSVSLTNYTLNFTR 70

Query: 73  TSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILLLEGT 132
           TSA ECL +A+ LEA ET N ELKKRYS C + +   V DIE A+E +  G  I+    T
Sbjct: 71  TSAIECLHYAQGLEAKETVNLELKKRYSYCSKSIKSTVTDIEVAQEYMGYGSYIVADLNT 130

Query: 133 VGTETATDNCLNVGN 148
           +G  T + +CLN  N
Sbjct: 131 MGAFTDSGDCLNSFN 145

[Close]

BLAST of Lcy03g002090 vs. NCBI nr
Match: XP_004148232.1 (pectinesterase inhibitor [Cucumis sativus])

HSP 1 Score: 115.2 bits (287), Expect = 5.3e-22
Identity = 66/141 (46.81%), Postives = 88/141 (62.41%), Query Frame = 0


Query: 7   NSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDAR--KVA 66
           +S L+FL  L F S VL +A++  PN + ++ICPKT+N + C ++LKP+G  DA   KVA
Sbjct: 18  SSILIFLFGLFFFSVVLLHADTGSPNVLTTTICPKTRNSTFCKTVLKPVGKSDAALLKVA 77

Query: 67  NYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGG 126
           NYTL+ A+T+  E L HA+RL A E  +P LK+RYS C R  DFV   +E A EAL  GG
Sbjct: 78  NYTLTFAHTTTVEGLHHAQRL-ATEATDPLLKQRYSECSRRFDFVTKGLEEAIEALAKGG 137

Query: 127 NILLLEGTVGTETATDNCLNV 146
            I L   T       D C+N+
Sbjct: 138 YIPLSHATGAAVVEADRCVNM 157

[Close]

BLAST of Lcy03g002090 vs. NCBI nr
Match: XP_008458686.1 (PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >TYK02951.1 pectinesterase inhibitor-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 7.2e-19
Identity = 62/141 (43.97%), Postives = 87/141 (61.70%), Query Frame = 0


Query: 7   NSNLVFLCCLVFSSFVLSNANSAPPNDVASSICPKTKNVSLCWSLLKPMGNIDAR--KVA 66
           +S L+FL  L F S VL +A++  PN + S+ICPKT+N +LC ++LKP+G  DA   KVA
Sbjct: 19  SSILIFLFGLFFFSVVLLHADTGSPNVITSTICPKTRNSTLCKTVLKPVGKSDAALLKVA 78

Query: 67  NYTLSLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGG 126
           NY+L+LA+T+  E L HA+RL A +  +P LK+RYS C R  D +   +E A  AL  G 
Sbjct: 79  NYSLTLAHTTTVEGLQHAQRL-ANDATDPLLKQRYSECSRRFDSMTKGLEEAIAALAKGE 138

Query: 127 NILLLEGTVGTETATDNCLNV 146
            I L   T       D C+++
Sbjct: 139 YIPLSHATGAAVVDADGCVDM 158

[Close]

BLAST of Lcy03g002090 vs. NCBI nr
Match: XP_008458684.1 (PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >TYK02953.1 pectinesterase inhibitor-like [Cucumis melo var. makuwa])

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-18
Identity = 61/134 (45.52%), Postives = 81/134 (60.45%), Query Frame = 0


Query: 10  LVFLCCLVFSSFVLSNANS-APPNDVASSICPKTKNVSLCWSLLKPMGNIDARKVANYTL 69
           LVF+C  +FS+ V S AN+  P NDVASSICPKT+N S C  +LK  G+ D + +A YTL
Sbjct: 17  LVFVCSFLFSNVVSSRANTITPSNDVASSICPKTRNPSFCVDVLKSAGSTDLKVLATYTL 76

Query: 70  SLAYTSASECLDHARRLEAVETANPELKKRYSRCLRELDFVVWDIERAKEALVNGGNILL 129
           +L  T+A + L+  + L A  T NP+LK +Y  C    + VV DIE AK  L +G    +
Sbjct: 77  NLTNTNAEKSLNLVKSL-AATTTNPQLKNQYLSCYESYEEVVGDIEIAKSNLASGDFNGV 136

Query: 130 LEGTVGTETATDNC 143
              T G  TA D+C
Sbjct: 137 NIATSGIMTAVDDC 149

The following BLAST results are available for this feature:

BLAST of Lcy03g002090 vs.


Match Name	E-value	Identity	Description

BLAST of Lcy03g002090 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1H4N5	8.0e-24	46.67	pectinesterase inhibitor-like OS=Cucurbita moschata OX=3662 GN=LOC111460015 PE=4...	[more]
A0A0A0KHY0	2.6e-22	46.81	PMEI domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G307370 PE=4 S...	[more]
A0A5D3BT93	3.5e-19	43.97	Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C7Z4	3.5e-19	43.97	pectinesterase inhibitor-like OS=Cucumis melo OX=3656 GN=LOC103498015 PE=4 SV=1	[more]
A0A5D3BTG4	5.9e-19	45.52	Pectinesterase inhibitor-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]

BLAST of Lcy03g002090 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023548317.1	9.6e-24	45.93	pectinesterase inhibitor-like [Cucurbita pepo subsp. pepo]	[more]
XP_022958860.1	1.6e-23	46.67	pectinesterase inhibitor-like [Cucurbita moschata]	[more]
XP_004148232.1	5.3e-22	46.81	pectinesterase inhibitor [Cucumis sativus]	[more]
XP_008458686.1	7.2e-19	43.97	PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >TYK02951.1 pectinestera...	[more]
XP_008458684.1	1.2e-18	45.52	PREDICTED: pectinesterase inhibitor-like [Cucumis melo] >TYK02953.1 pectinestera...	[more]

BLAST of Lcy03g002090 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	GENE3D	1.20.140.40	Invertase/pectin methylesterase inhibitor family protein	coord: 31..154 e-value: 4.4E-10 score: 41.7
IPR035513	Invertase/pectin methylesterase inhibitor domain superfamily	SUPERFAMILY	101148	Plant invertase/pectin methylesterase inhibitor	coord: 36..144
IPR006501	Pectinesterase inhibitor domain	TIGRFAM	TIGR01614	TIGR01614	coord: 7..122 e-value: 2.3E-14 score: 51.1
None	No IPR available	PANTHER	PTHR36710:SF6	PECTINESTERASE INHIBITOR-LIKE	coord: 9..123
None	No IPR available	PANTHER	PTHR36710	PECTINESTERASE INHIBITOR-LIKE	coord: 9..123

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lcy03g002090.1	Lcy03g002090.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0004857	enzyme inhibitor activity