Lcy03g002040 (gene) Sponge gourd (P93075) v1

Overview
NameLcy03g002040
Typegene
OrganismLuffa cylindrica cv. P93075 (Sponge gourd (P93075) v1)
DescriptionUnknown protein
LocationChr03: 6757588 .. 6758556 (+)
RNA-Seq ExpressionLcy03g002040
SyntenyLcy03g002040
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCGGAAATTTGTGGTTACTGCGGGCGCATCGGTCACGAAATGAAGGATTGCAGCACTGTTTATCTTGAAGATGGACTTTCTTCCCGACGACCAGAGTATGGGATGTGGATGGCCTTCAATGGTCGTTCATTGAGTATTCATCGCTCGACTAGTACCAGCCCAATTGGCAAGAATCAGATGGTGTTAGACTCTTCCTCAAATCCGAATCGGTCAGGTTCGAAAGCAAGGGGTGCTAGTACGCTAACTGATCTAAACCTTGCCGGAGGCTCACCGACGACGGGATCCGGCAGCCACCTCATGGACATCTCGTCGGCAATTAATGAGGACGTTACTGTTCCGGTGAGTGACAACTTGAACCCAATTAATGCTTTCAATTCGGCTATTAATGTTGCAGATTTTTCAAAAGTCAAGAAGAAATTAGATTTTGGGCTGGGACCTTTAAATGCTGAGACGGTTAGCAAAGGCAAGGCGATTATATCGGAATCCAACCACTTTTTCTGTTTTCAATCTAGCGGTGGAGATAAGAAACAACCGGATCTTCCAGTCTTTCCCCCCGTTGTTTTGTCCGGTTCGATGCAAGACAATGAAGACAAGCCGGCTGGGTTCTATTCACTTTCGGGATGGGCCAATGGATTGAACCAATTTGAATCAAAGCTGGGCCAAGTTGGTTTTATGAAGCAACAAGAATGGGCCACTTCTCAAGCCAAGCCCATAAGTGAGTTGAATGTAGGCCCTGTGACAACATCCTATTCGTCTAAAATTGGGCCTAATCTGAAATATTGGAAGAGGAAAGCAAGGAAGGGTAATACGGTTGCAAATTCCAGTGAGACCCATGAGAAACATAAGAAACGATTGGCTGAAGGAATGGTGGGTGGTTTGCTAAAACGTCTCCGAAATGAGGAGGATTTTCCTAACTCAGAGGAAACAACGATGGAGGCTGGTGACCAGTCCCGCCGAGAGCCATGA

mRNA sequence

ATGCCGGAAATTTGTGGTTACTGCGGGCGCATCGGTCACGAAATGAAGGATTGCAGCACTGTTTATCTTGAAGATGGACTTTCTTCCCGACGACCAGAGTATGGGATGTGGATGGCCTTCAATGGTCGTTCATTGAGTATTCATCGCTCGACTAGTACCAGCCCAATTGGCAAGAATCAGATGGTGTTAGACTCTTCCTCAAATCCGAATCGGTCAGGTTCGAAAGCAAGGGGTGCTAGTACGCTAACTGATCTAAACCTTGCCGGAGGCTCACCGACGACGGGATCCGGCAGCCACCTCATGGACATCTCGTCGGCAATTAATGAGGACGTTACTGTTCCGGTGAGTGACAACTTGAACCCAATTAATGCTTTCAATTCGGCTATTAATGTTGCAGATTTTTCAAAAGTCAAGAAGAAATTAGATTTTGGGCTGGGACCTTTAAATGCTGAGACGGTTAGCAAAGGCAAGGCGATTATATCGGAATCCAACCACTTTTTCTGTTTTCAATCTAGCGGTGGAGATAAGAAACAACCGGATCTTCCAGTCTTTCCCCCCGTTGTTTTGTCCGGTTCGATGCAAGACAATGAAGACAAGCCGGCTGGGTTCTATTCACTTTCGGGATGGGCCAATGGATTGAACCAATTTGAATCAAAGCTGGGCCAAGTTGGTTTTATGAAGCAACAAGAATGGGCCACTTCTCAAGCCAAGCCCATAAGTGAGTTGAATGTAGGCCCTGTGACAACATCCTATTCGTCTAAAATTGGGCCTAATCTGAAATATTGGAAGAGGAAAGCAAGGAAGGGTAATACGGTTGCAAATTCCAGTGAGACCCATGAGAAACATAAGAAACGATTGGCTGAAGGAATGGTGGGTGGTTTGCTAAAACGTCTCCGAAATGAGGAGGATTTTCCTAACTCAGAGGAAACAACGATGGAGGCTGGTGACCAGTCCCGCCGAGAGCCATGA

Coding sequence (CDS)

ATGCCGGAAATTTGTGGTTACTGCGGGCGCATCGGTCACGAAATGAAGGATTGCAGCACTGTTTATCTTGAAGATGGACTTTCTTCCCGACGACCAGAGTATGGGATGTGGATGGCCTTCAATGGTCGTTCATTGAGTATTCATCGCTCGACTAGTACCAGCCCAATTGGCAAGAATCAGATGGTGTTAGACTCTTCCTCAAATCCGAATCGGTCAGGTTCGAAAGCAAGGGGTGCTAGTACGCTAACTGATCTAAACCTTGCCGGAGGCTCACCGACGACGGGATCCGGCAGCCACCTCATGGACATCTCGTCGGCAATTAATGAGGACGTTACTGTTCCGGTGAGTGACAACTTGAACCCAATTAATGCTTTCAATTCGGCTATTAATGTTGCAGATTTTTCAAAAGTCAAGAAGAAATTAGATTTTGGGCTGGGACCTTTAAATGCTGAGACGGTTAGCAAAGGCAAGGCGATTATATCGGAATCCAACCACTTTTTCTGTTTTCAATCTAGCGGTGGAGATAAGAAACAACCGGATCTTCCAGTCTTTCCCCCCGTTGTTTTGTCCGGTTCGATGCAAGACAATGAAGACAAGCCGGCTGGGTTCTATTCACTTTCGGGATGGGCCAATGGATTGAACCAATTTGAATCAAAGCTGGGCCAAGTTGGTTTTATGAAGCAACAAGAATGGGCCACTTCTCAAGCCAAGCCCATAAGTGAGTTGAATGTAGGCCCTGTGACAACATCCTATTCGTCTAAAATTGGGCCTAATCTGAAATATTGGAAGAGGAAAGCAAGGAAGGGTAATACGGTTGCAAATTCCAGTGAGACCCATGAGAAACATAAGAAACGATTGGCTGAAGGAATGGTGGGTGGTTTGCTAAAACGTCTCCGAAATGAGGAGGATTTTCCTAACTCAGAGGAAACAACGATGGAGGCTGGTGACCAGTCCCGCCGAGAGCCATGA

Protein sequence

MPEICGYCGRIGHEMKDCSTVYLEDGLSSRRPEYGMWMAFNGRSLSIHRSTSTSPIGKNQMVLDSSSNPNRSGSKARGASTLTDLNLAGGSPTTGSGSHLMDISSAINEDVTVPVSDNLNPINAFNSAINVADFSKVKKKLDFGLGPLNAETVSKGKAIISESNHFFCFQSSGGDKKQPDLPVFPPVVLSGSMQDNEDKPAGFYSLSGWANGLNQFESKLGQVGFMKQQEWATSQAKPISELNVGPVTTSYSSKIGPNLKYWKRKARKGNTVANSSETHEKHKKRLAEGMVGGLLKRLRNEEDFPNSEETTMEAGDQSRREP
Homology
The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Sponge gourd (P93075) v1
Date Performed: 2021-12-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 51..94
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 274..306
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 267..322
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 5..18
score: 8.696716

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lcy03g002040.1Lcy03g002040.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding